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MicrobeTrace: Retooling molecular epidemiology for rapid public health response
Author / Creator:Campbell, Ellsworth M. ; Boyles, Anthony ; Shankar, Anupama ; Kim, Jay ; Knyazev, Sergey ; Cintron, Roxana ; Switzer, William M.
Publisher:San Francisco: Public Library of Science
Journal title:PLoS computational biology, 2021-09, Vol.17 (9), p.e1009300
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Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States
Author / Creator:Campbell, Ellsworth M. ; Jia, Hongwei ; Shankar, Anupama ; Hanson, Debra ; Luo, Wei ; Masciotra, Silvina ; Owen, S. Michele ; Oster, Alexandra M. ; Galang, Romeo R. ; Spiller, Michael W. ; Blosser, Sara J. ; Chapman, Erika ; Roseberry, Jeremy C. ; Gentry, Jessica ; Pontones, Pamela ; Duwve, Joan ; Peyrani, Paula ; Kagan, Ron M. ; Whitcomb, Jeannette M. ; Peters, Philip J. ; Heneine, Walid ; Brooks, John T. ; Switzer, William M.
Publisher:US: Oxford University Press
Journal title:The Journal of infectious diseases, 2017-11, Vol.216 (9), p.1053-1062
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High prevalence of simian foamy virus infection of South American Indians
Author / Creator:Switzer, William M. ; Zheng, HaoQiang ; Muniz, Cláudia P. ; Pan, Yi ; Jia, Hongwei ; Tang, Shaohua ; Shankar, Anupama ; Cintron, Roxana ; Drobeniuc, Jan ; Soares, Marcelo A. ; Heneine, Walid
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2025-06, Vol.21 (6), p.e1013169
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Correction: Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the Democratic Republic of the Congo with high nonhuman primate exposure
Author / Creator:Halbrook, Megan ; Gadoth, Adva ; Shankar, Anupama ; Zheng, HaoQiang ; Campbell, Ellsworth M. ; Hoff, Nicole A. ; Muyembe, Jean-Jacques ; Wemakoy, Emile Okitolonda ; Rimoin, Anne W. ; Switzer, William M.
Publisher:United States: Public Library of Science
Journal title:PLoS neglected tropical diseases, 2023-01, Vol.17 (1), p.e0011046
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Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the Democratic Republic of the Congo with high nonhuman primate exposure
Author / Creator:Halbrook, Megan ; Gadoth, Adva ; Shankar, Anupama ; Zheng, HaoQiang ; Campbell, Ellsworth M. ; Hoff, Nicole A. ; Muyembe, Jean-Jacques ; Wemakoy, Emile Okitolonda ; Rimoin, Anne W. ; Switzer, William M.
Publisher:United States: Public Library of Science
Journal title:PLoS neglected tropical diseases, 2021-01, Vol.15 (1), p.e0008923
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HantaNet: A New MicrobeTrace Application for Hantavirus Classification, Genomic Surveillance, Epidemiology and Outbreak Investigations
Author / Creator:Cintron, Roxana ; Whitmer, Shannon L. M. ; Moscoso, Evan ; Campbell, Ellsworth M. ; Kelly, Reagan ; Talundzic, Emir ; Mobley, Melissa ; Chiu, Kuo Wei ; Shedroff, Elizabeth ; Shankar, Anupama ; Montgomery, Joel M. ; Klena, John D. ; Switzer, William M.
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2023-11, Vol.15 (11), p.2208
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Dual Simian Foamy Virus/Human Immunodeficiency Virus Type 1 Infections in Persons from Côte d’Ivoire
Author / Creator:Switzer, William M. ; Tang, Shaohua ; Zheng, HaoQiang ; Shankar, Anupama ; Sprinkle, Patrick S. ; Sullivan, Vickie ; Granade, Timothy C. ; Heneine, Walid
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-06, Vol.11 (6), p.e0157709-e0157709
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Transmitted HIV Drug Resistance in Bulgaria Occurs in Clusters of Individuals from Different Transmission Groups and Various Subtypes (2012–2020)
Author / Creator:Alexiev, Ivailo ; Shankar, Anupama ; Pan, Yi ; Grigorova, Lyubomira ; Partsuneva, Alexandra ; Dimitrova, Reneta ; Gancheva, Anna ; Kostadinova, Asya ; Elenkov, Ivaylo ; Yancheva, Nina ; Grozdeva, Rusina ; Strashimirov, Dimitar ; Stoycheva, Mariana ; Baltadzhiev, Ivan ; Doichinova, Tsetsa ; Pekova, Lilia ; Kosmidis, Minas ; Emilova, Radoslava ; Nikolova, Maria ; Switzer, William M.
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2023-04, Vol.15 (4), p.941
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Absence of evidence of Xenotropic Murine Leukemia Virus-related virus infection in persons with Chronic Fatigue Syndrome and healthy controls in the United States
Author / Creator:Switzer, William M ; Jia, Hongwei ; Hohn, Oliver ; Zheng, HaoQiang ; Tang, Shaohua ; Shankar, Anupama ; Bannert, Norbert ; Simmons, Graham ; Hendry, R Michael ; Falkenberg, Virginia R ; Reeves, William C ; Heneine, Walid
Publisher:England: BioMed Central Ltd
Journal title:Retrovirology, 2010-07, Vol.7 (1), p.57-57, Article 57
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Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission
Author / Creator:Campbell, Ellsworth M. ; Patala, Anne ; Shankar, Anupama ; Li, Jin-Fen ; Johnson, Jeffrey A. ; Westheimer, Emily ; Gay, Cynthia L. ; Cohen, Stephanie E. ; Switzer, William M. ; Peters, Philip J.
Publisher:Switzerland: MDPI
Journal title:Viruses, 2020-01, Vol.12 (2), p.145
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Molecular Analysis of the Complete Genome of a Simian Foamy Virus Infecting Hylobates pileatus (pileated gibbon) Reveals Ancient Co-Evolution with Lesser Apes
Author / Creator:Shankar, Anupama ; Sibley, Samuel D. ; Goldberg, Tony L. ; Switzer, William M.
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2019-07, Vol.11 (7), p.605
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High HIV diversity, recombination, and superinfection revealed in a large outbreak among persons who inject drugs in Kentucky and Ohio, USA
Author / Creator:Switzer, William M ; Shankar, Anupama ; Jia, Hongwei ; Knyazev, Sergey ; Ambrosio, Frank ; Kelly, Reagan ; Zheng, HaoQiang ; Campbell, Ellsworth M ; Cintron, Roxana ; Pan, Yi ; Saduvala, Neeraja ; Panneer, Nivedha ; Richman, Rhiannon ; Singh, Manny B ; Thoroughman, Douglas A ; Blau, Erin F ; Khalil, George M ; Lyss, Sheryl ; Heneine, Walid
Publisher:UK: Oxford University Press
Journal title:Virus evolution, 2024, Vol.10 (1), p.veae015
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Detection of Murine Leukemia Virus or Mouse DNA in Commercial RT-PCR Reagents and Human DNAs
Author / Creator:Zheng, HaoQiang ; Jia, Hongwei ; Shankar, Anupama ; Heneine, Walid ; Switzer, William M.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-12, Vol.6 (12), p.e29050
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Identification and Characterization of Highly Divergent Simian Foamy Viruses in a Wide Range of New World Primates from Brazil
Author / Creator:Muniz, Cláudia P. ; Troncoso, Lian L. ; Moreira, Miguel A. ; Soares, Esmeralda A. ; Pissinatti, Alcides ; Bonvicino, Cibele R. ; Seuánez, Héctor N. ; Sharma, Bechan ; Jia, Hongwei ; Shankar, Anupama ; Switzer, William M. ; Santos, André F. ; Soares, Marcelo A.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-07, Vol.8 (7), p.e67568
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Detailed Molecular Epidemiologic Characterization of HIV-1 Infection in Bulgaria Reveals Broad Diversity and Evolving Phylodynamics
Author / Creator:Ivanov, Ivailo Alexiev ; Beshkov, Danail ; Shankar, Anupama ; Hanson, Debra L. ; Paraskevis, Dimitrios ; Georgieva, Viara ; Karamacheva, Lyudmila ; Taskov, Hristo ; Varleva, Tonka ; Elenkov, Ivaylo ; Stoicheva, Mariana ; Nikolova, Daniela ; Switzer, William M.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-03, Vol.8 (3), p.e59666
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Novel simian foamy virus infections from multiple monkey species in women from the Democratic Republic of Congo
Author / Creator:Switzer, William M ; Tang, Shaohua ; Ahuka-Mundeke, Steve ; Shankar, Anupama ; Hanson, Debra L ; Zheng, HaoQiang ; Ayouba, Ahidjo ; Wolfe, Nathan D ; LeBreton, Matthew ; Djoko, Cyrille F ; Tamoufe, Ubald ; Esteban, Amandine ; Heneine, Walid ; Peeters, Martine ; Wright, Linda L ; Muyembe-Tamfum, Jean Jacques ; Wemakoy, Emile Okitolonda ; Mulembakani, Prime ; Hoff, Nicole A ; Rimoin, Anne W
Publisher:England: BioMed Central Ltd
Journal title:Retrovirology, 2012-12, Vol.9 (1), p.100-100, Article 100
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Discovery and full genome characterization of two highly divergent simian immunodeficiency viruses infecting black-and-white colobus monkeys (Colobus guereza) in Kibale National Park, Uganda
Author / Creator:Lauck, Michael ; Switzer, William M ; Sibley, Samuel D ; Hyeroba, David ; Tumukunde, Alex ; Weny, Geoffrey ; Taylor, Bill ; Shankar, Anupama ; Ting, Nelson ; Chapman, Colin A ; Friedrich, Thomas C ; Goldberg, Tony L ; O'Connor, David H
Publisher:England: BioMed Central Ltd
Journal title:Retrovirology, 2013-10, Vol.10 (1), p.107-107, Article 107
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No Evidence of Murine Leukemia Virus-Related Viruses in Live Attenuated Human Vaccines
Author / Creator:Switzer, William M. ; Zheng, HaoQiang ; Simmons, Graham ; Zhou, Yanchen ; Tang, Shaohua ; Shankar, Anupama ; Kapusinszky, Beatrix ; Delwart, Eric L. ; Heneine, Walid
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-12, Vol.6 (12), p.e29223
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A gorilla reservoir for human T-lymphotropic virus type 4
Author / Creator:LeBreton, Matthew ; Switzer, William M ; Djoko, Cyrille F ; Gillis, Amethyst ; Jia, Hongwei ; Sturgeon, Michele M ; Shankar, Anupama ; Zheng, Haoqiang ; Nkeunen, Gerard ; Tamoufe, Ubald ; Nana, Ahmadou ; Le Doux Diffo, Joseph ; Tafon, Babila ; Kiyang, John ; Schneider, Bradley S ; Burke, Donald S ; Wolfe, Nathan D
Publisher:United States: Taylor & Francis Ltd
Journal title:Emerging microbes & infections, 2014-01, Vol.3 (1), p.1-12
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Investigation of Hepatitis B Virus and Human Immunodeficiency Virus Transmission among Severely Mentally Ill Residents at a Long Term Care Facility
Author / Creator:Jasuja, Supriya ; Thompson, Nicola D. ; Peters, Philip J. ; Khudyakov, Yury E. ; Patel, Megan T. ; Linchangco, Purisima ; Thai, Hong T. ; Switzer, William M. ; Shankar, Anupama ; Heneine, Walid ; Hu, Dale J. ; Moorman, Anne C. ; Gerber, Susan I.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-08, Vol.7 (8), p.e43252
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Showing 1 to 20 of 36 results

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MicrobeTrace: Retooling molecular epidemiology for rapid public health response

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Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States

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High prevalence of simian foamy virus infection of South American Indians

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Correction: Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the Democratic Republic of the Congo with high nonhuman primate exposure

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Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the Democratic Republic of the Congo with high nonhuman primate exposure

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HantaNet: A New MicrobeTrace Application for Hantavirus Classification, Genomic Surveillance, Epidemiology and Outbreak Investigations

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Dual Simian Foamy Virus/Human Immunodeficiency Virus Type 1 Infections in Persons from Côte d’Ivoire

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Transmitted HIV Drug Resistance in Bulgaria Occurs in Clusters of Individuals from Different Transmission Groups and Various Subtypes (2012–2020)

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Absence of evidence of Xenotropic Murine Leukemia Virus-related virus infection in persons with Chronic Fatigue Syndrome and healthy controls in the United States

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Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission

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Molecular Analysis of the Complete Genome of a Simian Foamy Virus Infecting Hylobates pileatus (pileated gibbon) Reveals Ancient Co-Evolution with Lesser Apes

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High HIV diversity, recombination, and superinfection revealed in a large outbreak among persons who inject drugs in Kentucky and Ohio, USA

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Detection of Murine Leukemia Virus or Mouse DNA in Commercial RT-PCR Reagents and Human DNAs

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Identification and Characterization of Highly Divergent Simian Foamy Viruses in a Wide Range of New World Primates from Brazil

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Detailed Molecular Epidemiologic Characterization of HIV-1 Infection in Bulgaria Reveals Broad Diversity and Evolving Phylodynamics

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Novel simian foamy virus infections from multiple monkey species in women from the Democratic Republic of Congo

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Discovery and full genome characterization of two highly divergent simian immunodeficiency viruses infecting black-and-white colobus monkeys (Colobus guereza) in Kibale National Park, Uganda

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No Evidence of Murine Leukemia Virus-Related Viruses in Live Attenuated Human Vaccines

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A gorilla reservoir for human T-lymphotropic virus type 4

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Investigation of Hepatitis B Virus and Human Immunodeficiency Virus Transmission among Severely Mentally Ill Residents at a Long Term Care Facility

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