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Whole genome sequencing of SARS-CoV2 strains circulating in Iran during five waves of pandemic
Author / Creator:Yavarian, Jila ; Nejati, Ahmad ; Salimi, Vahid ; Shafiei Jandaghi, Nazanin Zahra ; Sadeghi, Kaveh ; Abedi, Adel ; Sharifi Zarchi, Ali ; Gouya, Mohammad Mehdi ; Mokhtari-Azad, Talat
Publisher:United States: Public Library of Science
Journal title:PloS one, 2022-05, Vol.17 (5), p.e0267847
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An integrated analysis to predict micro‐RNAs targeting both stemness and metastasis in breast cancer stem cells
Author / Creator:Rahimi, Mahsa ; Sharifi‐Zarchi, Ali ; Firouzi, Javad ; Azimi, Mahnaz ; Zarghami, Nosratollah ; Alizadeh, Effat ; Ebrahimi, Marzieh
Publisher:England: John Wiley & Sons, Inc
Journal title:Journal of cellular and molecular medicine, 2019-04, Vol.23 (4), p.2442-2456
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Integration of Gastric Cancer RNA‐Seq Datasets Along With PPI Network Suggests That Nonhub Nodes Have the Potential to Become Biomarkers
Author / Creator:Siavoshi, Akram ; Piran, Mehran ; Sharifi‐Zarchi, Ali ; Ataellahi, Fatemeh
Publisher:United States: Wiley
Journal title:Cancer reports, 2025-01, Vol.8 (1), p.e70126-n/a
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A Universal and Robust Integrated Platform for the Scalable Production of Human Cardiomyocytes From Pluripotent Stem Cells
Author / Creator:Fonoudi, Hananeh ; Ansari, Hassan ; Abbasalizadeh, Saeed ; Larijani, Mehran Rezaei ; Kiani, Sahar ; Hashemizadeh, Shiva ; Zarchi, Ali Sharifi ; Bosman, Alexis ; Blue, Gillian M. ; Pahlavan, Sara ; Perry, Matthew ; Orr, Yishay ; Mayorchak, Yaroslav ; Vandenberg, Jamie ; Talkhabi, Mahmood ; Winlaw, David S. ; Harvey, Richard P. ; Aghdami, Nasser ; Baharvand, Hossein
Publisher:Durham, NC, USA: AlphaMed Press
Journal title:Stem cells translational medicine, 2015-12, Vol.4 (12), p.1482-1494
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StrongestPath: a Cytoscape application for protein–protein interaction analysis
Author / Creator:Mousavian, Zaynab ; Khodabandeh, Mehran ; Sharifi-Zarchi, Ali ; Nadafian, Alireza ; Mahmoudi, Alireza
Publisher:London: BioMed Central Ltd
Journal title:BMC bioinformatics, 2021-06, Vol.22 (1), p.1-352, Article 352
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The assessment of efficient representation of drug features using deep learning for drug repositioning
Author / Creator:Moridi, Mahroo ; Ghadirinia, Marzieh ; Sharifi-Zarchi, Ali ; Zare-Mirakabad, Fatemeh
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2019-11, Vol.20 (1), p.577-11, Article 577
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Pan-cancer analysis of microRNA expression profiles highlights microRNAs enriched in normal body cells as effective suppressors of multiple tumor types: A study based on TCGA database
Author / Creator:Moradi, Sharif ; Kamal, Aryan ; Aboulkheyr Es, Hamidreza ; Farhadi, Farnoosh ; Ebrahimi, Marzieh ; Chitsaz, Hamidreza ; Sharifi-Zarchi, Ali ; Baharvand, Hossein
Publisher:United States: Public Library of Science
Journal title:PloS one, 2022-04, Vol.17 (4), p.e0267291-e0267291
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An integrative Bayesian network approach to highlight key drivers in systemic lupus erythematosus
Author / Creator:Maleknia, Samaneh ; Salehi, Zahra ; Rezaei Tabar, Vahid ; Sharifi-Zarchi, Ali ; Kavousi, Kaveh
Publisher:London: BioMed Central Ltd
Journal title:Arthritis research & therapy, 2020-06, Vol.22 (1), p.1-156, Article 156
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DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism
Author / Creator:Sharifi-Zarchi, Ali ; Gerovska, Daniela ; Adachi, Kenjiro ; Totonchi, Mehdi ; Pezeshk, Hamid ; Taft, Ryan J ; Schöler, Hans R ; Chitsaz, Hamidreza ; Sadeghi, Mehdi ; Baharvand, Hossein ; Araúzo-Bravo, Marcos J
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2017-12, Vol.18 (1), p.964-964, Article 964
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miR-361-5p as a promising qRT-PCR internal control for tumor and normal breast tissues
Author / Creator:Ghanbari, Sogol ; Salimi, Adel ; Rahmani, Saeid ; Nafissi, Nahid ; Sharifi-Zarchi, Ali ; Mowla, Seyed Javad
Publisher:San Francisco: Public Library of Science
Journal title:PloS one, 2021-06, Vol.16 (6), p.e0253009-e0253009
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Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis
Author / Creator:Karimizadeh, Elham ; Sharifi-Zarchi, Ali ; Nikaein, Hassan ; Salehi, Seyedehsaba ; Salamatian, Bahar ; Elmi, Naser ; Gharibdoost, Farhad ; Mahmoudi, Mahdi
Publisher:England: BioMed Central Ltd
Journal title:BMC medical genomics, 2019-12, Vol.12 (1), p.199-199, Article 199
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Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase
Author / Creator:Karamzadeh, Razieh ; Karimi-Jafari, Mohammad Hossein ; Sharifi-Zarchi, Ali ; Chitsaz, Hamidreza ; Salekdeh, Ghasem Hosseini ; Moosavi-Movahedi, Ali Akbar
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-06, Vol.7 (1), p.3666-11, Article 3666
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DNA-RNA Hybrid (R-Loop): From a Unified Picture of the Mammalian Telomere to the Genome-Wide Profile
Author / Creator:Rassoulzadegan, Minoo ; Sharifi-Zarchi, Ali ; Kianmehr, Leila
Publisher:Basel: MDPI AG
Journal title:Cells (Basel, Switzerland), 2021-06, Vol.10 (6), p.1556
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Genome-wide DNA methylation profiling in ectopic and eutopic of endometrial tissues
Author / Creator:Barjaste, Nadia ; Shahhoseini, Maryam ; Afsharian, Parvaneh ; Sharifi-Zarchi, Ali ; Masoudi-Nejad, Ali
Publisher:New York: Springer US
Journal title:Journal of assisted reproduction and genetics, 2019-08, Vol.36 (8), p.1743-1752
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Dysregulation of ribosome-related genes in ankylosing spondylitis: a systems biology approach and experimental method
Author / Creator:Lari, Arezou ; Pourbadie, Hamid Gholami ; Sharifi-Zarchi, Ali ; Akhtari, Maryam ; Samimi, Leila Nejatbakhsh ; Jamshidi, Ahmadreza ; Mahmoudi, Mahdi
Publisher:London: BioMed Central Ltd
Journal title:BMC musculoskeletal disorders, 2021-09, Vol.22 (1), p.1-789, Article 789
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The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency
Author / Creator:Yousefi, Meisam ; Marashi, Sayed-Amir ; Sharifi-Zarchi, Ali ; Taleahmad, Sara
Publisher:England: BioMed Central Ltd
Journal title:Cell & bioscience, 2019-08, Vol.9 (1), p.71-71, Article 71
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Downregulation of Extracellular Matrix and Cell Adhesion Molecules in Cumulus Cells of Infertile Polycystic Ovary Syndrome Women with and without Insulin Resistance
Author / Creator:Hassani, Fatemeh ; Oryan, Shahrbanoo ; Eftekhari-Yazdi, Poopak ; Bazrgar, Masood ; Moini, Ashraf ; Nasiri, Nahid ; Sharifi-Zarchi, Ali
Publisher:Iran: Royan Institute of Iran
Journal title:Cell journal (Yakhteh), 2019-01, Vol.21 (1), p.35-42
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Evaluation of the Ankylosing Spondylitis Transcriptome for Oxidative Phosphorylation Pathway: The Shared Pathway with Neurodegenerative Diseases
Author / Creator:Lari, Arezou ; Gholami Pourbadie, Hamid ; Sharifi-Zarchi, Ali ; Aslani, Saeed ; Nejatbakhsh Samimi, Leila ; Jamshidi, Ahmadreza ; Mahmoudi, Mahdi
Publisher:Tehran: Tehran University of Medical Sciences
Journal title:Iranian journal of allergy, asthma, and immunology, 2021-09, Vol.20 (5), p.563
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Proteome Analysis of Ground State Pluripotency
Author / Creator:Taleahmad, Sara ; Mirzaei, Mehdi ; Parker, Lindsay M. ; Hassani, Seyedeh-Nafiseh ; Mollamohammadi, Sepideh ; Sharifi-Zarchi, Ali ; Haynes, Paul A. ; Baharvand, Hossein ; Salekdeh, Ghasem Hosseini
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2015-12, Vol.5 (1), p.17985-17985, Article 17985
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Down-Regulation of miR-200c and Up-Regulation of miR-30c Target both Stemness and Metastasis Genes in Breast Cancer
Author / Creator:Rahimi, Mahsa ; Sharifi-Zarchi, Ali ; Zarghami, Nosratollah ; Geranpayeh, Lobat ; Ebrahimi, Marzieh ; Alizadeh, Effat
Publisher:Iran: Royan Institute of Iran
Journal title:Cell journal (Yakhteh), 2020, Vol.21 (4), p.467-478
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Showing 1 to 20 of 52 results

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Whole genome sequencing of SARS-CoV2 strains circulating in Iran during five waves of pandemic

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An integrated analysis to predict micro‐RNAs targeting both stemness and metastasis in breast cancer stem cells

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Integration of Gastric Cancer RNA‐Seq Datasets Along With PPI Network Suggests That Nonhub Nodes Have the Potential to Become Biomarkers

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A Universal and Robust Integrated Platform for the Scalable Production of Human Cardiomyocytes From Pluripotent Stem Cells

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StrongestPath: a Cytoscape application for protein–protein interaction analysis

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The assessment of efficient representation of drug features using deep learning for drug repositioning

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Pan-cancer analysis of microRNA expression profiles highlights microRNAs enriched in normal body cells as effective suppressors of multiple tumor types: A study based on TCGA database

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An integrative Bayesian network approach to highlight key drivers in systemic lupus erythematosus

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DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism

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miR-361-5p as a promising qRT-PCR internal control for tumor and normal breast tissues

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Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis

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Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase

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DNA-RNA Hybrid (R-Loop): From a Unified Picture of the Mammalian Telomere to the Genome-Wide Profile

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Genome-wide DNA methylation profiling in ectopic and eutopic of endometrial tissues

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Dysregulation of ribosome-related genes in ankylosing spondylitis: a systems biology approach and experimental method

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The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency

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Downregulation of Extracellular Matrix and Cell Adhesion Molecules in Cumulus Cells of Infertile Polycystic Ovary Syndrome Women with and without Insulin Resistance

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Evaluation of the Ankylosing Spondylitis Transcriptome for Oxidative Phosphorylation Pathway: The Shared Pathway with Neurodegenerative Diseases

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Proteome Analysis of Ground State Pluripotency

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Down-Regulation of miR-200c and Up-Regulation of miR-30c Target both Stemness and Metastasis Genes in Breast Cancer

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