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Plant Raf-like kinase integrates abscisic acid and hyperosmotic stress signaling upstream of SNF1-related protein kinase2
Author / Creator:Saruhashi, Masashi ; Ghosh, Totan Kumar ; Arai, Kenta ; Ishizaki, Yumiko ; Hagiwara, Kazuya ; Komatsu, Kenji ; Shiwa, Yuh ; Izumikawa, Keiichi ; Yoshikawa, Harunori ; Umezawa, Taishi ; Sakata, Yoichi ; Takezawa, Daisuke
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2015-11, Vol.112 (46), p.E6388-E6396
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TFIID dependency of steady-state mRNA transcription altered epigenetically by simultaneous functional loss of Taf1 and Spt3 is Hsp104-dependent
Author / Creator:Iwami, Ryo ; Takai, Naoki ; Matsutani, Minenosuke ; Shiwa, Yuh ; Kokubo, Haruki ; Kasahara, Koji ; Kokubo, Tetsuro
Publisher:United States: Public Library of Science
Journal title:PloS one, 2023-02, Vol.18 (2), p.e0281233-e0281233
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Fpr1, a primary target of rapamycin, functions as a transcription factor for ribosomal protein genes cooperatively with Hmo1 in Saccharomyces cerevisiae
Author / Creator:Kasahara, Koji ; Nakayama, Risa ; Shiwa, Yuh ; Kanesaki, Yu ; Ishige, Taichiro ; Yoshikawa, Hirofumi ; Kokubo, Tetsuro
Publisher:San Francisco: Public Library of Science
Journal title:PLoS genetics, 2020-06, Vol.16 (6), p.e1008865-e1008865
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Chromosome-level genome assemblies of Cutaneotrichosporon spp. (Trichosporonales, Basidiomycota) reveal imbalanced evolution between nucleotide sequences and chromosome synteny
Author / Creator:Kobayashi, Yuuki ; Kayamori, Ayane ; Aoki, Keita ; Shiwa, Yuh ; Matsutani, Minenosuke ; Fujita, Nobuyuki ; Sugita, Takashi ; Iwasaki, Wataru ; Tanaka, Naoto ; Takashima, Masako
Publisher:London: BioMed Central Ltd
Journal title:BMC genomics, 2023-10, Vol.24 (1), p.1-609, Article 609
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Correction: Chromosome-level genome assemblies of Cutaneotrichosporon spp. (Trichosporonales, Basidiomycota) reveal imbalanced evolution between nucleotide sequences and chromosome synteny
Author / Creator:Kobayashi, Yuuki ; Kayamori, Ayane ; Aoki, Keita ; Shiwa, Yuh ; Matsutani, Minenosuke ; Fujita, Nobuyuki ; Sugita, Takashi ; Iwasaki, Wataru ; Tanaka, Naoto ; Takashima, Masako
Publisher:London: BioMed Central Ltd
Journal title:BMC genomics, 2023-10, Vol.24 (1), p.1-653, Article 653
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Orthologs of Saccharomyces cerevisiae SFH2, genes encoding Sec14 family proteins, implicated in utilization of n-alkanes and filamentous growth in response to n-alkanes in Yarrowia lipolytica
Author / Creator:Watanabe, Natsuhito ; Iwama, Ryo ; Murayama, Reiko ; Suzawa, Tetsuki ; He, Zhiyong ; Mizuike, Aya ; Shiwa, Yuh ; Yoshikawa, Hirofumi ; Horiuchi, Hiroyuki ; Fukuda, Ryouichi
Publisher:England: Oxford University Press
Journal title:FEMS yeast research, 2022-02, Vol.22 (1)
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Draft genome sequencing of Sporolactobacillus terrae SBT-1, an efficient bacterium to ferment concentrated sugar to d-lactic acid
Author / Creator:Thitiprasert, Sitanan ; Piluk, Jirabhorn ; Tolieng, Vasana ; Tanaka, Naoto ; Shiwa, Yuh ; Fujita, Nobuyuki ; Tanasupawat, Somboon ; Thongchul, Nuttha
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Archives of microbiology, 2021-08, Vol.203 (6), p.3577-3590
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Population Evolution of Helicobacter pylori through Diversification in DNA Methylation and Interstrain Sequence Homogenization
Author / Creator:Kojima, Kenji K ; Furuta, Yoshikazu ; Yahara, Koji ; Fukuyo, Masaki ; Yuh Shiwa ; Shin Nishiumi ; Yoshida, Masaru ; Azuma, Takeshi ; Yoshikawa, Hirofumi ; Kobayashi, Ichizo
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2016-11, Vol.33 (11), p.2848-2859
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Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp
Author / Creator:Endo, Akihito ; Tanizawa, Yasuhiro ; Tanaka, Naoto ; Maeno, Shintaro ; Kumar, Himanshu ; Shiwa, Yuh ; Okada, Sanae ; Yoshikawa, Hirofumi ; Dicks, Leon ; Nakagawa, Junichi ; Arita, Masanori
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2015-12, Vol.16 (1113), p.1117-1117, Article 1117
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Strigolactone regulates anthocyanin accumulation, acid phosphatases production and plant growth under low phosphate condition in Arabidopsis
Author / Creator:Ito, Shinsaku ; Nozoye, Tomoko ; Sasaki, Eriko ; Imai, Misaki ; Shiwa, Yuh ; Shibata-Hatta, Mari ; Ishige, Taichiro ; Fukui, Kosuke ; Ito, Ken ; Nakanishi, Hiromi ; Nishizawa, Naoko K ; Yajima, Shunsuke ; Asami, Tadao
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-03, Vol.10 (3), p.e0119724-e0119724
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Identification of epigenetic memory candidates associated with gestational age at birth through analysis of methylome and transcriptional data
Author / Creator:Kashima, Kohei ; Kawai, Tomoko ; Nishimura, Riki ; Shiwa, Yuh ; Urayama, Kevin Y. ; Kamura, Hiromi ; Takeda, Kazue ; Aoto, Saki ; Ito, Atsushi ; Matsubara, Keiko ; Nagamatsu, Takeshi ; Fujii, Tomoyuki ; Omori, Isaku ; Shimizu, Mitsumasa ; Hyodo, Hironobu ; Kugu, Koji ; Matsumoto, Kenji ; Shimizu, Atsushi ; Oka, Akira ; Mizuguchi, Masashi ; Nakabayashi, Kazuhiko ; Hata, Kenichiro ; Takahashi, Naoto
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-02, Vol.11 (1), p.3381-3381, Article 3381
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The genome sequence of Streptomyces rochei 7434AN4, which carries a linear chromosome and three characteristic linear plasmids
Author / Creator:Nindita, Yosi ; Cao, Zhisheng ; Fauzi, Amirudin Akhmad ; Teshima, Aiko ; Misaki, Yuya ; Muslimin, Rukman ; Yang, Yingjie ; Shiwa, Yuh ; Yoshikawa, Hirofumi ; Tagami, Michihira ; Lezhava, Alexander ; Ishikawa, Jun ; Kuroda, Makoto ; Sekizuka, Tsuyoshi ; Inada, Kuninobu ; Kinashi, Haruyasu ; Arakawa, Kenji
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-07, Vol.9 (1), p.10973-11, Article 10973
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iMETHYL: an integrative database of human DNA methylation, gene expression, and genomic variation
Author / Creator:Komaki, Shohei ; Shiwa, Yuh ; Furukawa, Ryohei ; Hachiya, Tsuyoshi ; Ohmomo, Hideki ; Otomo, Ryo ; Satoh, Mamoru ; Hitomi, Jiro ; Sobue, Kenji ; Sasaki, Makoto ; Shimizu, Atsushi
Publisher:London: Nature Publishing Group UK
Journal title:Human genome variation, 2018-03, Vol.5 (1), p.18008-18008, Article 18008
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A novel intracellular dextranase derived from Paenibacillus sp. 598K with an ability to degrade cycloisomaltooligosaccharides
Author / Creator:Mizushima, Daiki ; Miyazaki, Takatsugu ; Shiwa, Yuh ; Kimura, Keitarou ; Suzuki, Shiho ; Fujita, Nobuyuki ; Yoshikawa, Hirofumi ; Kimura, Atsuo ; Kitamura, Shinichi ; Hara, Hiroshi ; Funane, Kazumi
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Applied microbiology and biotechnology, 2019-08, Vol.103 (16), p.6581-6592
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Using pollen DNA metabarcoding to profile nectar sources of urban beekeeping in Kōtō-ku, Tokyo
Author / Creator:Tanaka, Keisuke ; Nozaki, Akinobu ; Nakadai, Hazuki ; Shiwa, Yuh ; Shimizu-Kadota, Mariko
Publisher:England: BioMed Central
Journal title:BMC research notes, 2020-11, Vol.13 (1), p.515-515, Article 515
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Stable and efficient delivery of DNA to Bacillus subtilis (natto) using pLS20 conjugational transfer plasmids
Author / Creator:Itaya, Mitsuhiro ; Nagasaku, Mayumi ; Shimada, Tomoe ; Ohtani, Naoto ; Shiwa, Yuh ; Yoshikawa, Hirofumi ; Kaneko, Shinya ; Tomita, Masaru ; Sato, Mitsuru
Publisher:England: Oxford University Press
Journal title:FEMS microbiology letters, 2019-02, Vol.366 (4), p.1
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Evaluation of rRNA depletion methods for capturing the RNA virome from environmental surfaces
Author / Creator:Shiwa, Yuh ; Baba, Tomoya ; Sierra, Maria A ; Kim, JangKeun ; Mason, Christopher E ; Suzuki, Haruo
Publisher:England: BioMed Central Ltd
Journal title:BMC research notes, 2023-07, Vol.16 (1), p.142-142, Article 142
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The rhizosphere bacterial community of water yam (Dioscorea alata L.) under limited water conditions
Author / Creator:Kihara, Shunta ; Yamamoto, Kosuke ; Shiwa, Yuh ; Matsutani, Minenosuke ; Kikuno, Hidehiko ; Shiwachi, Hironobu
Publisher:Wiley
Journal title:Journal of sustainable agriculture and environment, 2024-10, Vol.3 (4), p.n/a
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Transcriptome profile of carbon catabolite repression in an efficient l-(+)-lactic acid-producing bacterium Enterococcus mundtii QU25 grown in media with combinations of cellobiose, xylose, and glucos...
Author / Creator:Shiwa, Yuh ; Fujiwara, Haruko ; Numaguchi, Mao ; Abdel-Rahman, Mohamed Ali ; Nabeta, Keisuke ; Kanesaki, Yu ; Tashiro, Yukihiro ; Zendo, Takeshi ; Tanaka, Naoto ; Fujita, Nobuyuki ; Yoshikawa, Hirofumi ; Sonomoto, Kenji ; Shimizu-Kadota, Mariko
Publisher:United States: Public Library of Science
Journal title:PloS one, 2020-11, Vol.15 (11), p.e0242070-e0242070
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PCR-based screening, isolation, and partial characterization of motile lactobacilli from various animal feces
Author / Creator:Suzuki, Shunya ; Fujita, Koki ; Maeno, Shintaro ; Shiwa, Yuh ; Endo, Akihito ; Yokota, Kenji ; Igimi, Shizunobu ; Kajikawa, Akinobu
Publisher:England: BioMed Central Ltd
Journal title:BMC microbiology, 2020-06, Vol.20 (1), p.142-142, Article 142
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Plant Raf-like kinase integrates abscisic acid and hyperosmotic stress signaling upstream of SNF1-related protein kinase2

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TFIID dependency of steady-state mRNA transcription altered epigenetically by simultaneous functional loss of Taf1 and Spt3 is Hsp104-dependent

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Fpr1, a primary target of rapamycin, functions as a transcription factor for ribosomal protein genes cooperatively with Hmo1 in Saccharomyces cerevisiae

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Chromosome-level genome assemblies of Cutaneotrichosporon spp. (Trichosporonales, Basidiomycota) reveal imbalanced evolution between nucleotide sequences and chromosome synteny

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Correction: Chromosome-level genome assemblies of Cutaneotrichosporon spp. (Trichosporonales, Basidiomycota) reveal imbalanced evolution between nucleotide sequences and chromosome synteny

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Orthologs of Saccharomyces cerevisiae SFH2, genes encoding Sec14 family proteins, implicated in utilization of n-alkanes and filamentous growth in response to n-alkanes in Yarrowia lipolytica

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Draft genome sequencing of Sporolactobacillus terrae SBT-1, an efficient bacterium to ferment concentrated sugar to d-lactic acid

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Population Evolution of Helicobacter pylori through Diversification in DNA Methylation and Interstrain Sequence Homogenization

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Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp

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Strigolactone regulates anthocyanin accumulation, acid phosphatases production and plant growth under low phosphate condition in Arabidopsis

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Identification of epigenetic memory candidates associated with gestational age at birth through analysis of methylome and transcriptional data

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The genome sequence of Streptomyces rochei 7434AN4, which carries a linear chromosome and three characteristic linear plasmids

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iMETHYL: an integrative database of human DNA methylation, gene expression, and genomic variation

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A novel intracellular dextranase derived from Paenibacillus sp. 598K with an ability to degrade cycloisomaltooligosaccharides

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Using pollen DNA metabarcoding to profile nectar sources of urban beekeeping in Kōtō-ku, Tokyo

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Stable and efficient delivery of DNA to Bacillus subtilis (natto) using pLS20 conjugational transfer plasmids

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Evaluation of rRNA depletion methods for capturing the RNA virome from environmental surfaces

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The rhizosphere bacterial community of water yam (Dioscorea alata L.) under limited water conditions

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Transcriptome profile of carbon catabolite repression in an efficient l-(+)-lactic acid-producing bacterium Enterococcus mundtii QU25 grown in media with combinations of cellobiose, xylose, and glucos...

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PCR-based screening, isolation, and partial characterization of motile lactobacilli from various animal feces

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