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ArticlesPeer ReviewedFull Text
Differential abundance analysis for microbial marker-gene surveys
Author / Creator:Paulson, Joseph N ; Stine, O Colin ; Bravo, Héctor Corrada ; Pop, Mihai
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2013-12, Vol.10 (12), p.1200-1202
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Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease
Author / Creator:Liu, Bo ; Faller, Lina L. ; Klitgord, Niels ; Mazumdar, Varun ; Ghodsi, Mohammad ; Sommer, Daniel D. ; Gibbons, Theodore R. ; Treangen, Todd J. ; Chang, Yi-Chien ; Li, Shan ; Stine, O. Colin ; Hasturk, Hatice ; Kasif, Simon ; Segrè, Daniel ; Pop, Mihai ; Amar, Salomon
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-06, Vol.7 (6), p.e37919
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Return of Chloroquine-Susceptible Falciparum Malaria in Malawi Was a Reexpansion of Diverse Susceptible Parasites
Author / Creator:Laufer, Miriam K. ; Takala-Harrison, Shannon ; Dzinjalamala, Fraction K. ; Stine, O. Colin ; Taylor, Terrie E. ; Plowe, Christopher V.
Publisher:Oxford: The University of Chicago Press
Journal title:The Journal of infectious diseases, 2010-09, Vol.202 (5), p.801-808
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Akkermansia muciniphila Associated with Improved Linear Growth among Young Children, Democratic Republic of the Congo
Author / Creator:George, Christine Marie ; Birindwa, Alves ; Li, Shan ; Williams, Camille ; Kuhl, Jennifer ; Thomas, Elizabeth ; François, Ruthly ; Presence, Amani Sanvura ; Claude, Bisimwa Rusanga Jean ; Mirindi, Patrick ; Bisimwa, Lucien ; Perin, Jamie ; Stine, O. Colin
Publisher:United States: U.S. National Center for Infectious Diseases
Journal title:Emerging infectious diseases, 2023-01, Vol.29 (1), p.81-88
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Backward compatibility of whole genome sequencing data with MLVA typing using a new MLVAtype shiny application for Vibrio cholerae
Author / Creator:Ambroise, Jérôme ; Irenge, Léonid M. ; Durant, Jean-François ; Bearzatto, Bertrand ; Bwire, Godfrey ; Stine, O. Colin ; Gala, Jean-Luc
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-12, Vol.14 (12), p.e0225848-e0225848
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Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains
Author / Creator:Boisen, Nadia ; Østerlund, Mark T. ; Joensen, Katrine G. ; Santiago, Araceli E. ; Mandomando, Inacio ; Cravioto, Alejandro ; Chattaway, Marie A. ; Gonyar, Laura A. ; Overballe-Petersen, Søren ; Stine, O. Colin ; Rasko, David A. ; Scheutz, Flemming ; Nataro, James P.
Publisher:United States: Public Library of Science
Journal title:PLoS neglected tropical diseases, 2020-09, Vol.14 (9), p.e0008613-e0008613
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ArticlesPeer ReviewedFull Text
Effects of Lyse-It on endonuclease fragmentation, function and activity
Author / Creator:Santaus, Tonya M. ; Zhang, Fan ; Li, Shan ; Stine, O. Colin ; Geddes, Chris D.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-09, Vol.14 (9), p.e0223008-e0223008
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A comparison of Lyse-It to other cellular sample preparation, bacterial lysing, and DNA fragmentation technologies
Author / Creator:Santaus, Tonya M. ; Li, Shan ; Saha, Lahari ; Chen, Wilbur H. ; Bhagat, Siya ; Stine, O. Colin ; Geddes, Chris D.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-07, Vol.14 (7), p.e0220102-e0220102
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Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS
Author / Creator:Bwire, Godfrey ; Sack, David A. ; Almeida, Mathieu ; Li, Shan ; Voeglein, Joseph B. ; Debes, Amanda Kay ; Kagirita, Atek ; Buyinza, Ambrose Wabwire ; Orach, Christopher Garimoi ; Stine, O. Colin
Publisher:United States: Public Library of Science
Journal title:PLoS neglected tropical diseases, 2018-06, Vol.12 (6), p.e0006492-e0006492
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Targeted gown and glove use to prevent Staphylococcus aureus acquisition in community-based nursing homes: A pilot study
Author / Creator:Lydecker, Alison D. ; Osei, Patience A. ; Pineles, Lisa ; Johnson, J. Kristie ; Meisel, Jacquelyn ; Stine, O. Colin ; Magder, Laurence ; Gurses, Ayse P. ; Hebden, Joan ; Oruc, Cagla ; Mody, Lona ; Jacobs Slifka, Kara ; Stone, Nimalie D. ; Roghmann, Mary-Claire
Publisher:United States: Cambridge University Press
Journal title:Infection control and hospital epidemiology, 2021-04, Vol.42 (4), p.448-454
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ArticlesPeer ReviewedFull Text
Recent Clonal Origin of Cholera in Haiti
Author / Creator:Ali, Afsar ; Chen, Yuansha ; Johnson, Judith A. ; Redden, Edsel ; Mayette, Yfto ; Rashid, Mohammed H. ; Stine, O. Colin ; Morris, J. Glenn
Publisher:United States: U.S. National Center for Infectious Diseases
Journal title:Emerging infectious diseases, 2011-04, Vol.17 (4), p.699-701
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Rapid sample preparation with Lyse-It® for Listeria monocytogenes and Vibrio cholerae
Author / Creator:Santaus, Tonya M. ; Li, Shan ; Ladd, Paula ; Harvey, Amanda ; Cole, Shannon ; Stine, O. Colin ; Geddes, Chris D.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2018-07, Vol.13 (7), p.e0201070-e0201070
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ArticlesPeer ReviewedFull Text
Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence
Author / Creator:Chen, Yuansha ; Stine, O Colin ; Badger, Jonathan H ; Gil, Ana I ; Nair, G Balakrish ; Nishibuchi, Mitsuaki ; Fouts, Derrick E
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2011-06, Vol.12 (1), p.294-294, Article 294
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Three transmission events of Vibrio cholerae O1 into Lusaka, Zambia
Author / Creator:Mwaba, John ; Debes, Amanda K. ; Murt, Kelsey N. ; Shea, Patrick ; Simuyandi, Michelo ; Laban, Natasha ; Kazimbaya, Katayi ; Chisenga, Caroline ; Li, Shan ; Almeida, Mathieu ; Meisel, Jacquelyn S. ; Shibemba, Aaron ; Kantenga, Timothy ; Mukonka, Victor ; Kwenda, Geoffrey ; Sack, David A. ; Chilengi, Roma ; Stine, O. Colin
Publisher:England: BioMed Central Ltd
Journal title:BMC infectious diseases, 2021-06, Vol.21 (1), p.570-570, Article 570
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A prospective cohort study comparing household contact and water Vibrio cholerae isolates in households of cholera patients in rural Bangladesh
Author / Creator:George, Christine Marie ; Hasan, Khaled ; Monira, Shirajum ; Rahman, Zillur ; Saif-Ur-Rahman, K. M. ; Rashid, Mahamud-ur ; Zohura, Fatema ; Parvin, Tahmina ; Islam Bhuyian, Md. Sazzadul ; Mahmud, Md. Toslim ; Li, Shan ; Perin, Jamie ; Morgan, Camille ; Mustafiz, Munshi ; Sack, R. Bradley ; Sack, David A. ; Stine, O. Colin ; Alam, Munirul
Publisher:United States: Public Library of Science
Journal title:PLoS neglected tropical diseases, 2018-07, Vol.12 (7), p.e0006641-e0006641
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ArticlesPeer ReviewedFull Text
Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus
Author / Creator:Boyd, E Fidelma ; Cohen, Ana ; Naughton, Lynn M ; Ussery, David W ; Binnewies, Tim T ; Stine, O Colin ; Parent, Michelle A
Publisher:England: BioMed Central Ltd
Journal title:BMC microbiology, 2008-06, Vol.8 (1), p.110-110
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Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh
Author / Creator:George, Christine Marie ; Rashid, Mahamud ; Almeida, Mathieu ; Saif-Ur-Rahman, K. M. ; Monira, Shirajum ; Bhuyian, Md. Sazzadul Islam ; Hasan, Khaled ; Mahmud, Toslim T. ; Li, Shan ; Brubaker, Jessica ; Perin, Jamie ; Rahman, Zillur ; Mustafiz, Munshi ; Sack, David A. ; Sack, R. Bradley ; Alam, Munirul ; Stine, O. Colin
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2017-11, Vol.18 (1), p.903-903, Article 903
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Shigella Infections in Household Contacts of Pediatric Shigellosis Patients in Rural Bangladesh
Author / Creator:George, Christine Marie ; Ahmed, Shahnawaz ; Talukder, Kaisar A. ; Azmi, Ishrat J. ; Perin, Jamie ; Sack, R. Bradley ; Sack, David A ; Stine, O. Colin ; Oldja, Lauren ; Shahnaij, Mohammad ; Chakraborty, Subhra ; Parvin, Tahmina ; Bhuyian, Sazzadul Islam ; Bouwer, Edward ; Zhang, Xiaotong ; Hasan, Trisheeta N. ; Luna, Sharmin J. ; Akter, Fatema ; Faruque, Abu S.G.
Publisher:United States: U.S. National Center for Infectious Diseases
Journal title:Emerging infectious diseases, 2015-11, Vol.21 (11), p.2006-2013
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Identification of PCDH1 as a Novel Susceptibility Gene for Bronchial Hyperresponsiveness
Author / Creator:Koppelman, Gerard H ; Meyers, Deborah A ; Howard, Timothy D ; Zheng, S. Lilly ; Hawkins, Greg A ; Ampleford, Elizabeth J ; Xu, Jianfeng ; Koning, Henk ; Bruinenberg, Marcel ; Nolte, Ilja M ; van Diemen, Cleo C ; Boezen, H. Marike ; Timens, Wim ; Whittaker, Paul A ; Stine, O. Colin ; Barton, Sheila J ; Holloway, John W ; Holgate, Stephen T ; Graves, Penelope E ; Martinez, Fernando D ; van Oosterhout, Antoon J ; Bleecker, Eugene R ; Postma, Dirkje S
Publisher:New York, NY: Am Thoracic Soc
Journal title:American journal of respiratory and critical care medicine, 2009-11, Vol.180 (10), p.929-935
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The Role of Patient-to-Patient Transmission in the Acquisition of Imipenem-Resistant Pseudomonas aeruginosa Colonization in the Intensive Care Unit
Author / Creator:Johnson, J. Kristie ; Smith, Gwen ; Lee, Mary S. ; Venezia, Richard A. ; Stine, O. Colin ; Nataro, James P. ; Hsiao, William ; Harris, Anthony D.
Publisher:Oxford: The University of Chicago Press
Journal title:The Journal of infectious diseases, 2009-09, Vol.200 (6), p.900-905
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Showing 1 to 20 of 79 results

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Differential abundance analysis for microbial marker-gene surveys

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Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease

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Return of Chloroquine-Susceptible Falciparum Malaria in Malawi Was a Reexpansion of Diverse Susceptible Parasites

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Akkermansia muciniphila Associated with Improved Linear Growth among Young Children, Democratic Republic of the Congo

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Backward compatibility of whole genome sequencing data with MLVA typing using a new MLVAtype shiny application for Vibrio cholerae

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Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains

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Effects of Lyse-It on endonuclease fragmentation, function and activity

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A comparison of Lyse-It to other cellular sample preparation, bacterial lysing, and DNA fragmentation technologies

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Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS

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Targeted gown and glove use to prevent Staphylococcus aureus acquisition in community-based nursing homes: A pilot study

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Recent Clonal Origin of Cholera in Haiti

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Rapid sample preparation with Lyse-It® for Listeria monocytogenes and Vibrio cholerae

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Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence

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Three transmission events of Vibrio cholerae O1 into Lusaka, Zambia

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A prospective cohort study comparing household contact and water Vibrio cholerae isolates in households of cholera patients in rural Bangladesh

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Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus

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Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh

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Shigella Infections in Household Contacts of Pediatric Shigellosis Patients in Rural Bangladesh

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Identification of PCDH1 as a Novel Susceptibility Gene for Bronchial Hyperresponsiveness

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The Role of Patient-to-Patient Transmission in the Acquisition of Imipenem-Resistant Pseudomonas aeruginosa Colonization in the Intensive Care Unit

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