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ArticlesPeer ReviewedFull Text
Genome sequencing reveals agronomically important loci in rice using MutMap
Author / Creator:Abe, Akira ; Kosugi, Shunichi ; Yoshida, Kentaro ; Natsume, Satoshi ; Takagi, Hiroki ; Kanzaki, Hiroyuki ; Matsumura, Hideo ; Yoshida, Kakoto ; Mitsuoka, Chikako ; Tamiru, Muluneh ; Innan, Hideki ; Cano, Liliana ; Kamoun, Sophien ; Terauchi, Ryohei
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2012-02, Vol.30 (2), p.174-178
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MutMap accelerates breeding of a salt-tolerant rice cultivar
Author / Creator:Takagi, Hiroki ; Tamiru, Muluneh ; Abe, Akira ; Yoshida, Kentaro ; Uemura, Aiko ; Yaegashi, Hiroki ; Obara, Tsutomu ; Oikawa, Kaori ; Utsushi, Hiroe ; Kanzaki, Eiko ; Mitsuoka, Chikako ; Natsume, Satoshi ; Kosugi, Shunichi ; Kanzaki, Hiroyuki ; Matsumura, Hideo ; Urasaki, Naoya ; Kamoun, Sophien ; Terauchi, Ryohei
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2015-05, Vol.33 (5), p.445-449
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Pharmacokinetic and pharmacodynamic similarity between SAR341402 insulin aspart and Japan-approved NovoRapid in healthy Japanese subjects
Author / Creator:Shiramoto, Masanari ; Yoshihara, Tatsuya ; Schmider, Wolfgang ; Takagi, Hiroki ; Nowotny, Irene ; Kajiwara, Miyuki ; Muto, Hideya
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-11, Vol.11 (1), p.22931-22931, Article 22931
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MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii
Author / Creator:Takagi, Hiroki ; Uemura, Aiko ; Yaegashi, Hiroki ; Tamiru, Muluneh ; Abe, Akira ; Mitsuoka, Chikako ; Utsushi, Hiroe ; Natsume, Satoshi ; Kanzaki, Hiroyuki ; Matsumura, Hideo ; Saitoh, Hiromasa ; Yoshida, Kentaro ; Cano, Liliana M. ; Kamoun, Sophien ; Terauchi, Ryohei
Publisher:England: New Phytologist Trust
Journal title:The New phytologist, 2013-10, Vol.200 (1), p.276-283
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QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea
Author / Creator:Singh, Vikas K. ; Khan, Aamir W. ; Jaganathan, Deepa ; Thudi, Mahendar ; Roorkiwal, Manish ; Takagi, Hiroki ; Garg, Vanika ; Kumar, Vinay ; Chitikineni, Annapurna ; Gaur, Pooran M. ; Sutton, Tim ; Terauchi, Ryohei ; Varshney, Rajeev K.
Publisher:England: John Wiley & Sons, Inc
Journal title:Plant biotechnology journal, 2016-11, Vol.14 (11), p.2110-2119
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The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism
Author / Creator:Arimura, Yasuhiro ; Tachiwana, Hiroaki ; Takagi, Hiroki ; Hori, Tetsuya ; Kimura, Hiroshi ; Fukagawa, Tatsuo ; Kurumizaka, Hitoshi
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-02, Vol.10 (1), p.576-576, Article 576
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ArticlesPeer ReviewedFull Text
MutMap+: genetic mapping and mutant identification without crossing in rice
Author / Creator:Fekih, Rym ; Takagi, Hiroki ; Tamiru, Muluneh ; Abe, Akira ; Natsume, Satoshi ; Yaegashi, Hiroki ; Sharma, Shailendra ; Sharma, Shiveta ; Kanzaki, Hiroyuki ; Matsumura, Hideo ; Saitoh, Hiromasa ; Mitsuoka, Chikako ; Utsushi, Hiroe ; Uemura, Aiko ; Kanzaki, Eiko ; Kosugi, Shunichi ; Yoshida, Kentaro ; Cano, Liliana ; Kamoun, Sophien ; Terauchi, Ryohei
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-07, Vol.8 (7), p.e68529-e68529
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ArticlesPeer ReviewedFull Text
Exome QTL-seq maps monogenic locus and QTLs in barley
Author / Creator:Hisano, Hiroshi ; Sakamoto, Kazuki ; Takagi, Hiroki ; Terauchi, Ryohei ; Sato, Kazuhiro
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2017-02, Vol.18 (1), p.125-125, Article 125
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Transcriptional and Post-transcriptional Mechanisms Limit Heading Date 1 (Hd1) Function to Adapt Rice to High Latitudes
Author / Creator:Goretti, Daniela ; Martignago, Damiano ; Landini, Martina ; Brambilla, Vittoria ; Gómez-Ariza, Jorge ; Gnesutta, Nerina ; Galbiati, Francesca ; Collani, Silvio ; Takagi, Hiroki ; Terauchi, Ryohei ; Mantovani, Roberto ; Fornara, Fabio
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2017-01, Vol.13 (1), p.e1006530-e1006530
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ArticlesPeer ReviewedFull Text
A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in rice (Oryza sativa L.)
Author / Creator:Tamiru, Muluneh ; Undan, Jerwin R. ; Takagi, Hiroki ; Abe, Akira ; Yoshida, Kakoto ; Undan, Jesusa Q. ; Natsume, Satoshi ; Uemura, Aiko ; Saitoh, Hiromasa ; Matsumura, Hideo ; Urasaki, Naoya ; Yokota, Takao ; Terauchi, Ryohei
Publisher:Dordrecht: Springer Netherlands
Journal title:Plant molecular biology, 2015-05, Vol.88 (1-2), p.85-99
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Lineage-specific gene acquisition or loss is involved in interspecific hybrid sterility in rice
Author / Creator:Koide, Yohei ; Ogino, Atsushi ; Yoshikawa, Takanori ; Kitashima, Yuki ; Saito, Nozomi ; Kanaoka, Yoshitaka ; Onishi, Kazumitsu ; Yoshitake, Yoshihiro ; Tsukiyama, Takuji ; Saito, Hiroki ; Teraishi, Masayoshi ; Yamagata, Yoshiyuki ; Uemura, Aiko ; Takagi, Hiroki ; Hayashi, Yoriko ; Abe, Tomoko ; Fukuta, Yoshimichi ; Okumoto, Yutaka ; Kanazawa, Akira
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2018-02, Vol.115 (9), p.E1955-E1962
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ArticlesPeer ReviewedFull Text
Polyploid QTL‐seq towards rapid development of tightly linked DNA markers for potato and sweetpotato breeding through whole‐genome resequencing
Author / Creator:Yamakawa, Hiromoto ; Haque, Emdadul ; Tanaka, Masaru ; Takagi, Hiroki ; Asano, Kenji ; Shimosaka, Etsuo ; Akai, Kotaro ; Okamoto, Satoshi ; Katayama, Kenji ; Tamiya, Seiji
Publisher:England: John Wiley & Sons, Inc
Journal title:Plant biotechnology journal, 2021-10, Vol.19 (10), p.2040-2051
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Next generation long-culm rice with superior lodging resistance and high grain yield, Monster Rice 1
Author / Creator:Nomura, Tomohiro ; Arakawa, Naoya ; Yamamoto, Toshio ; Ueda, Tadamasa ; Adachi, Shunsuke ; Yonemaru, Jun-Ichi ; Abe, Akira ; Takagi, Hiroki ; Yokoyama, Tadashi ; Ookawa, Taiichiro
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-08, Vol.14 (8), p.e0221424-e0221424
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Impact of rice GENERAL REGULATORY FACTOR14h (GF14h) on low-temperature seed germination and its application to breeding
Author / Creator:Sugimura, Yusaku ; Oikawa, Kaori ; Sugihara, Yu ; Utsushi, Hiroe ; Kanzaki, Eiko ; Ito, Kazue ; Ogasawara, Yumiko ; Fujioka, Tomoaki ; Takagi, Hiroki ; Shimizu, Motoki ; Shimono, Hiroyuki ; Terauchi, Ryohei ; Abe, Akira
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2024-08, Vol.20 (8), p.e1011369
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MutMapPlus identified novel mutant alleles of a rice starch branching enzyme IIb gene for fine‐tuning of cooked rice texture
Author / Creator:Nakata, Masaru ; Miyashita, Tomomi ; Kimura, Rieko ; Nakata, Yuriko ; Takagi, Hiroki ; Kuroda, Masaharu ; Yamaguchi, Takeshi ; Umemoto, Takayuki ; Yamakawa, Hiromoto
Publisher:England: John Wiley & Sons, Inc
Journal title:Plant biotechnology journal, 2018-01, Vol.16 (1), p.111-123
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High-performance pipeline for MutMap and QTL-seq
Author / Creator:Sugihara, Yu ; Young, Lester ; Yaegashi, Hiroki ; Natsume, Satoshi ; Shea, Daniel J ; Takagi, Hiroki ; Booker, Helen ; Innan, Hideki ; Terauchi, Ryohei ; Abe, Akira
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2022-03, Vol.10, p.e13170-e13170, Article e13170
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NGS-based genome wide association study helps to develop co-dominant marker for the physical map-based locus of PFRU controlling flowering in cultivated octoploid strawberry
Author / Creator:Saiga, Sorachi ; Tada, Maiko ; Segawa, Tenta ; Sugihara, Yu ; Nishikawa, Minami ; Makita, Natsu ; Sakamoto, Minami ; Tanaka, Kanako ; Wada, Takuya ; Takagi, Hiroki
Publisher:Dordrecht: Springer Netherlands
Journal title:Euphytica, 2023-01, Vol.219 (1), p.6, Article 6
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Identification of candidate flowering and sex genes in white Guinea yam (D. rotundata Poir.) by SuperSAGE transcriptome profiling
Author / Creator:Girma, Gezahegn ; Natsume, Satoshi ; Carluccio, Anna Vittoria ; Takagi, Hiroki ; Matsumura, Hideo ; Uemura, Aiko ; Muranaka, Satoru ; Takagi, Hiroko ; Stavolone, Livia ; Gedil, Melaku ; Spillane, Charles ; Terauchi, Ryohei ; Tamiru, Muluneh
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-09, Vol.14 (9), p.e0216912-e0216912
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Next-generation sequencing-based bulked segregant analysis for QTL mapping in the heterozygous species Brassica rapa
Author / Creator:Itoh, Noriaki ; Segawa, Tenta ; Tamiru, Muluneh ; Abe, Akira ; Sakamoto, Shota ; Uemura, Aiko ; Oikawa, Kaori ; Kutsuzawa, Hiroto ; Koga, Hironori ; Imamura, Tomohiro ; Terauchi, Ryohei ; Takagi, Hiroki
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Theoretical and applied genetics, 2019-10, Vol.132 (10), p.2913-2925
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Disentangling the complex gene interaction networks between rice and the blast fungus identifies a new pathogen effector
Author / Creator:Sugihara, Yu ; Abe, Yoshiko ; Takagi, Hiroki ; Abe, Akira ; Shimizu, Motoki ; Ito, Kazue ; Kanzaki, Eiko ; Oikawa, Kaori ; Kourelis, Jiorgos ; Langner, Thorsten ; Win, Joe ; Białas, Aleksandra ; Lüdke, Daniel ; Contreras, Mauricio P ; Chuma, Izumi ; Saitoh, Hiromasa ; Kobayashi, Michie ; Zheng, Shuan ; Tosa, Yukio ; Banfield, Mark J ; Kamoun, Sophien ; Terauchi, Ryohei ; Fujisaki, Koki
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2023-01, Vol.21 (1), p.e3001945
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Genome sequencing reveals agronomically important loci in rice using MutMap

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MutMap accelerates breeding of a salt-tolerant rice cultivar

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Pharmacokinetic and pharmacodynamic similarity between SAR341402 insulin aspart and Japan-approved NovoRapid in healthy Japanese subjects

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MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii

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QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea

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The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism

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MutMap+: genetic mapping and mutant identification without crossing in rice

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Exome QTL-seq maps monogenic locus and QTLs in barley

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Transcriptional and Post-transcriptional Mechanisms Limit Heading Date 1 (Hd1) Function to Adapt Rice to High Latitudes

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A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in rice (Oryza sativa L.)

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Lineage-specific gene acquisition or loss is involved in interspecific hybrid sterility in rice

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Polyploid QTL‐seq towards rapid development of tightly linked DNA markers for potato and sweetpotato breeding through whole‐genome resequencing

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Next generation long-culm rice with superior lodging resistance and high grain yield, Monster Rice 1

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Impact of rice GENERAL REGULATORY FACTOR14h (GF14h) on low-temperature seed germination and its application to breeding

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MutMapPlus identified novel mutant alleles of a rice starch branching enzyme IIb gene for fine‐tuning of cooked rice texture

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High-performance pipeline for MutMap and QTL-seq

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NGS-based genome wide association study helps to develop co-dominant marker for the physical map-based locus of PFRU controlling flowering in cultivated octoploid strawberry

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Identification of candidate flowering and sex genes in white Guinea yam (D. rotundata Poir.) by SuperSAGE transcriptome profiling

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Next-generation sequencing-based bulked segregant analysis for QTL mapping in the heterozygous species Brassica rapa

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Disentangling the complex gene interaction networks between rice and the blast fungus identifies a new pathogen effector

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