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Inferring protein expression changes from mRNA in Alzheimer’s dementia using deep neural networks
Author / Creator:Tasaki, Shinya ; Xu, Jishu ; Avey, Denis R. ; Johnson, Lynnaun ; Petyuk, Vladislav A. ; Dawe, Robert J. ; Bennett, David A. ; Wang, Yanling ; Gaiteri, Chris
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-02, Vol.13 (1), p.655-15, Article 655
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Multi-omics monitoring of drug response in rheumatoid arthritis in pursuit of molecular remission
Author / Creator:Tasaki, Shinya ; Suzuki, Katsuya ; Kassai, Yoshiaki ; Takeshita, Masaru ; Murota, Atsuko ; Kondo, Yasushi ; Ando, Tatsuya ; Nakayama, Yusuke ; Okuzono, Yuumi ; Takiguchi, Maiko ; Kurisu, Rina ; Miyazaki, Takahiro ; Yoshimoto, Keiko ; Yasuoka, Hidekata ; Yamaoka, Kunihiro ; Morita, Rimpei ; Yoshimura, Akihiko ; Toyoshiba, Hiroyoshi ; Takeuchi, Tsutomu
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-07, Vol.9 (1), p.2755-12, Article 2755
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Transgenic mice overexpressing miR-137 in the brain show schizophrenia-associated behavioral deficits and transcriptome profiles
Author / Creator:Arakawa, Yuuichi ; Yokoyama, Kazumasa ; Tasaki, Shinya ; Kato, Junichi ; Nakashima, Kosuke ; Takeyama, Michiyasu ; Nakatani, Atsushi ; Suzuki, Motohisa
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-07, Vol.14 (7), p.e0220389-e0220389
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Deep learning decodes the principles of differential gene expression
Author / Creator:Tasaki, Shinya ; Gaiteri, Chris ; Mostafavi, Sara ; Wang, Yanling
Publisher:London: Nature Publishing Group UK
Journal title:Nature machine intelligence, 2020-07, Vol.2 (7), p.376-386
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Cortical proteins may provide motor resilience in older adults
Author / Creator:Buchman, Aron S. ; Yu, Lei ; Oveisgharan, Shahram ; Petyuk, Vladislav A. ; Tasaki, Shinya ; Gaiteri, Chris ; Wilson, Robert S. ; Grodstein, Francine ; Schneider, Julie A. ; Klein, Hans-Ulrich ; De Jager, Philip L. ; Bennett, David A.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-05, Vol.11 (1), p.11311-11311, Article 11311
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Identification of novel genes associated with dysregulation of B cells in patients with primary Sjögren’s syndrome
Author / Creator:Inamo, Jun ; Suzuki, Katsuya ; Takeshita, Masaru ; Kassai, Yoshiaki ; Takiguchi, Maiko ; Kurisu, Rina ; Okuzono, Yuumi ; Tasaki, Shinya ; Yoshimura, Akihiko ; Takeuchi, Tsutomu
Publisher:London: BioMed Central
Journal title:Arthritis research & therapy, 2020-06, Vol.22 (1), p.1-153, Article 153
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Robust, scalable, and informative clustering for diverse biological networks
Author / Creator:Gaiteri, Chris ; Connell, David R. ; Sultan, Faraz A. ; Iatrou, Artemis ; Ng, Bernard ; Szymanski, Boleslaw K. ; Zhang, Ada ; Tasaki, Shinya
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2023-10, Vol.24 (1), p.228-228, Article 228
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Cascading epigenomic analysis for identifying disease genes from the regulatory landscape of GWAS variants
Author / Creator:Ng, Bernard ; Casazza, William ; Kim, Nam Hee ; Wang, Chendi ; Farhadi, Farnush ; Tasaki, Shinya ; Bennett, David A. ; De Jager, Philip L. ; Gaiteri, Christopher ; Mostafavi, Sara
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2021-11, Vol.17 (11), p.e1009918-e1009918
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SR-TWAS: leveraging multiple reference panels to improve transcriptome-wide association study power by ensemble machine learning
Author / Creator:Parrish, Randy L. ; Buchman, Aron S. ; Tasaki, Shinya ; Wang, Yanling ; Avey, Denis ; Xu, Jishu ; De Jager, Philip L. ; Bennett, David A. ; Epstein, Michael P. ; Yang, Jingjing
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-08, Vol.15 (1), p.6646-16, Article 6646
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The Molecular and Neuropathological Consequences of Genetic Risk for Alzheimer's Dementia
Author / Creator:Tasaki, Shinya ; Gaiteri, Chris ; Mostafavi, Sara ; De Jager, Philip L. ; Bennett, David A.
Publisher:Switzerland: Frontiers Research Foundation
Journal title:Frontiers in neuroscience, 2018-10, Vol.12, p.699-699
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Digital quantification of the MMSE interlocking pentagon areas: a three-stage algorithm
Author / Creator:Kim, Namhee ; Truty, Timothy ; Duke Han, S. ; Heo, Moonseong ; Buchman, Aron S. ; Bennett, David A. ; Tasaki, Shinya
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2024-04, Vol.14 (1), p.9038-9038, Article 9038
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Differential gene expression analysis based on linear mixed model corrects false positive inflation for studying quantitative traits
Author / Creator:Tang, Shizhen ; Buchman, Aron S. ; Wang, Yanling ; Avey, Denis ; Xu, Jishu ; Tasaki, Shinya ; Bennett, David A. ; Zheng, Qi ; Yang, Jingjing
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-10, Vol.13 (1), p.16570-16570, Article 16570
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Seasonal plasticity of cognition and related biological measures in adults with and without Alzheimer disease: Analysis of multiple cohorts
Author / Creator:Lim, Andrew S. P. ; Gaiteri, Chris ; Yu, Lei ; Sohail, Shahmir ; Swardfager, Walter ; Tasaki, Shinya ; Schneider, Julie A. ; Paquet, Claire ; Stuss, Donald T. ; Masellis, Mario ; Black, Sandra E. ; Hugon, Jacques ; Buchman, Aron S. ; Barnes, Lisa L. ; Bennett, David A. ; De Jager, Philip L.
Publisher:United States: Public Library of Science
Journal title:PLoS medicine, 2018-09, Vol.15 (9), p.e1002647
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CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor
Author / Creator:Funnell, Tyler ; Tasaki, Shinya ; Oloumi, Arusha ; Araki, Shinsuke ; Kong, Esther ; Yap, Damian ; Nakayama, Yusuke ; Hughes, Christopher S. ; Cheng, S.-W. Grace ; Tozaki, Hirokazu ; Iwatani, Misa ; Sasaki, Satoshi ; Ohashi, Tomohiro ; Miyazaki, Tohru ; Morishita, Nao ; Morishita, Daisuke ; Ogasawara-Shimizu, Mari ; Ohori, Momoko ; Nakao, Shoichi ; Karashima, Masatoshi ; Sano, Masaya ; Murai, Aiko ; Nomura, Toshiyuki ; Uchiyama, Noriko ; Kawamoto, Tomohiro ; Hara, Ryujiro ; Nakanishi, Osamu ; Shumansky, Karey ; Rosner, Jamie ; Wan, Adrian ; McKinney, Steven ; Morin, Gregg B. ; Nakanishi, Atsushi ; Shah, Sohrab ; Toyoshiba, Hiroyoshi ; Aparicio, Samuel
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2017-02, Vol.8 (1), p.7-16, Article 7
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Cognition may link cortical IGFBP5 levels with motor function in older adults
Author / Creator:Buchman, Aron S. ; Yu, Lei ; Petyuk, Vladislav A. ; Gaiteri, Chris ; Tasaki, Shinya ; Blizinsky, Katherine D. ; Schneider, Julie A. ; De Jager, Philip L. ; Bennett, David A.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-08, Vol.14 (8), p.e0220968-e0220968
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Structural variants linked to Alzheimer’s disease and other common age-related clinical and neuropathologic traits
Author / Creator:Vialle, Ricardo A. ; de Paiva Lopes, Katia ; Li, Yan ; Ng, Bernard ; Schneider, Julie A. ; Buchman, Aron S. ; Wang, Yanling ; Farfel, Jose M. ; Barnes, Lisa L. ; Wingo, Aliza P. ; Wingo, Thomas S. ; Seyfried, Nicholas T. ; De Jager, Philip L. ; Gaiteri, Chris ; Tasaki, Shinya ; Bennett, David A.
Publisher:England: BioMed Central Ltd
Journal title:Genome medicine, 2025-03, Vol.17 (1), p.20-16, Article 20
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Explainable deep learning approach for extracting cognitive features from hand-drawn images of intersecting pentagons
Author / Creator:Tasaki, Shinya ; Kim, Namhee ; Truty, Tim ; Zhang, Ada ; Buchman, Aron S. ; Lamar, Melissa ; Bennett, David A.
Publisher:London: Nature Publishing Group UK
Journal title:NPJ digital medicine, 2023-08, Vol.6 (1), p.157-157, Article 157
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Unconventional Source of Neurotoxic Protein Aggregation from Organelle Off-Target Bax∆2 in Alzheimer’s Disease
Author / Creator:Yao, Qi ; Mascarenhas dos Santos, Anne Caroline ; Zhang, Huaiyuan ; Mañas, Adriana ; Hussaini, Ammarah ; Kim, Ujin ; Xu, Congtai ; Basheer, Sana ; Tasaki, Shinya ; Xiang, Jialing
Publisher:Switzerland: MDPI AG
Journal title:Biomolecules (Basel, Switzerland), 2023-06, Vol.13 (6), p.970
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G-protein coupled estrogen receptor 1, amyloid-β, and tau tangles in older adults
Author / Creator:Oveisgharan, Shahram ; Yu, Lei ; de Paiva Lopes, Katia ; Petyuk, Vladislav A. ; Tasaki, Shinya ; Vialle, Ricardo ; Menon, Vilas ; Wang, Yanling ; De Jager, Philip L. ; Schneider, Julie A. ; Bennett, David A.
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2024-05, Vol.7 (1), p.569-9, Article 569
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Identification of Novel Schizophrenia Loci by Homozygosity Mapping Using DNA Microarray Analysis
Author / Creator:Kurotaki, Naohiro ; Tasaki, Shinya ; Mishima, Hiroyuki ; Ono, Shinji ; Imamura, Akira ; Kikuchi, Taeko ; Nishida, Nao ; Tokunaga, Katsushi ; Yoshiura, Koh-ichiro ; Ozawa, Hiroki
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-05, Vol.6 (5), p.e20589-e20589
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Inferring protein expression changes from mRNA in Alzheimer’s dementia using deep neural networks

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Multi-omics monitoring of drug response in rheumatoid arthritis in pursuit of molecular remission

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Transgenic mice overexpressing miR-137 in the brain show schizophrenia-associated behavioral deficits and transcriptome profiles

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Deep learning decodes the principles of differential gene expression

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Cortical proteins may provide motor resilience in older adults

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Identification of novel genes associated with dysregulation of B cells in patients with primary Sjögren’s syndrome

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Robust, scalable, and informative clustering for diverse biological networks

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Cascading epigenomic analysis for identifying disease genes from the regulatory landscape of GWAS variants

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SR-TWAS: leveraging multiple reference panels to improve transcriptome-wide association study power by ensemble machine learning

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The Molecular and Neuropathological Consequences of Genetic Risk for Alzheimer's Dementia

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Digital quantification of the MMSE interlocking pentagon areas: a three-stage algorithm

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Differential gene expression analysis based on linear mixed model corrects false positive inflation for studying quantitative traits

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Seasonal plasticity of cognition and related biological measures in adults with and without Alzheimer disease: Analysis of multiple cohorts

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CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor

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Cognition may link cortical IGFBP5 levels with motor function in older adults

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Structural variants linked to Alzheimer’s disease and other common age-related clinical and neuropathologic traits

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Explainable deep learning approach for extracting cognitive features from hand-drawn images of intersecting pentagons

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Unconventional Source of Neurotoxic Protein Aggregation from Organelle Off-Target Bax∆2 in Alzheimer’s Disease

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G-protein coupled estrogen receptor 1, amyloid-β, and tau tangles in older adults

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Identification of Novel Schizophrenia Loci by Homozygosity Mapping Using DNA Microarray Analysis

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