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A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease
Author / Creator:Caussy, Cyrielle ; Tripathi, Anupriya ; Humphrey, Greg ; Bassirian, Shirin ; Singh, Seema ; Faulkner, Claire ; Bettencourt, Ricki ; Rizo, Emily ; Richards, Lisa ; Xu, Zhenjiang Z. ; Downes, Michael R. ; Evans, Ronald M. ; Brenner, David A. ; Sirlin, Claude B. ; Knight, Rob ; Loomba, Rohit
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-03, Vol.10 (1), p.1406-1406, Article 1406
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A Novel Sparse Compositional Technique Reveals Microbial Perturbations
Author / Creator:Martino, Cameron ; Morton, James T. ; Marotz, Clarisse A. ; Thompson, Luke R. ; Tripathi, Anupriya ; Knight, Rob ; Zengler, Karsten
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2019-01, Vol.4 (1)
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Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort
Author / Creator:Qin, Youwen ; Havulinna, Aki S. ; Liu, Yang ; Jousilahti, Pekka ; Ritchie, Scott C. ; Tokolyi, Alex ; Sanders, Jon G. ; Valsta, Liisa ; Brożyńska, Marta ; Zhu, Qiyun ; Tripathi, Anupriya ; Vázquez-Baeza, Yoshiki ; Loomba, Rohit ; Cheng, Susan ; Jain, Mohit ; Niiranen, Teemu ; Lahti, Leo ; Knight, Rob ; Salomaa, Veikko ; Inouye, Michael ; Méric, Guillaume
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2022-02, Vol.54 (2), p.134-142
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Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction
Author / Creator:Zhou, Youlian ; Xu, Zhenjiang Zech ; He, Yan ; Yang, Yunsheng ; Liu, Le ; Lin, Qianyun ; Nie, Yuqiang ; Li, Mingsong ; Zhi, Fachao ; Liu, Side ; Amir, Amnon ; González, Antonio ; Tripathi, Anupriya ; Chen, Minhu ; Wu, Gary D. ; Knight, Rob ; Zhou, Hongwei ; Chen, Ye
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2018-01, Vol.3 (1)
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Chemically informed analyses of metabolomics mass spectrometry data with Qemistree
Author / Creator:Tripathi, Anupriya ; Vázquez-Baeza, Yoshiki ; Gauglitz, Julia M. ; Wang, Mingxun ; Dührkop, Kai ; Nothias-Esposito, Mélissa ; Acharya, Deepa D. ; Ernst, Madeleine ; van der Hooft, Justin J. J. ; Zhu, Qiyun ; McDonald, Daniel ; Brejnrod, Asker D. ; Gonzalez, Antonio ; Handelsman, Jo ; Fleischauer, Markus ; Ludwig, Marcus ; Böcker, Sebastian ; Nothias, Louis-Félix ; Knight, Rob ; Dorrestein, Pieter C.
Publisher:New York: Nature Publishing Group US
Journal title:Nature chemical biology, 2021-02, Vol.17 (2), p.146-151
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Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome
Author / Creator:Tripathi, Anupriya ; Melnik, Alexey V. ; Xue, Jin ; Poulsen, Orit ; Meehan, Michael J. ; Humphrey, Gregory ; Jiang, Lingjing ; Ackermann, Gail ; McDonald, Daniel ; Zhou, Dan ; Knight, Rob ; Dorrestein, Pieter C. ; Haddad, Gabriel G.
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2018-05, Vol.3 (3)
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Differential gut microbiota composition in β-Thalassemia patients and its correlation with iron overload
Author / Creator:Nonejuie, Poochit ; Wilantho, Alisa ; McDonald, Daniel ; Htoo, Htut Htut ; Chalerm, Jenjira ; Tripathi, Anupriya ; Ngamphiw, Chumpol ; Tongsima, Sissades ; Knight, Rob ; Paiboonsukwong, Kittiphong ; Fucharoen, Suthat
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2024-10, Vol.14 (1), p.23858-12, Article 23858
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Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides
Author / Creator:Aleti, Gajender ; Kohn, Jordan N. ; Troyer, Emily A. ; Weldon, Kelly ; Huang, Shi ; Tripathi, Anupriya ; Dorrestein, Pieter C. ; Swafford, Austin D. ; Knight, Rob ; Hong, Suzi
Publisher:England: BioMed Central Ltd
Journal title:BMC microbiology, 2022-03, Vol.22 (1), p.75-75, Article 75
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Experimental Chagas disease-induced perturbations of the fecal microbiome and metabolome
Author / Creator:McCall, Laura-Isobel ; Tripathi, Anupriya ; Vargas, Fernando ; Knight, Rob ; Dorrestein, Pieter C. ; Siqueira-Neto, Jair L.
Publisher:United States: Public Library of Science
Journal title:PLoS neglected tropical diseases, 2018-03, Vol.12 (3), p.e0006344-e0006344
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An untargeted metabolomics analysis of exogenous chemicals in human milk and transfer to the infant
Author / Creator:Thomas, Sydney ; Gauglitz, Julia M. ; Tripathi, Anupriya ; Vargas, Fernando ; Bertrand, Kerri ; Kim, Jae H. ; Chambers, Christina ; Dorrestein, Pieter C. ; Tsunoda, Shirley M.
Publisher:United States: John Wiley & Sons, Inc
Journal title:Clinical and translational science, 2022-11, Vol.15 (11), p.2576-2582
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Correction for Taylor et al., “Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome”
Author / Creator:Taylor, Bryn C. ; Weldon, Kelly C. ; Ellis, Ronald J. ; Franklin, Donald ; Groth, Tobin ; Gentry, Emily C. ; Tripathi, Anupriya ; McDonald, Daniel ; Humphrey, Gregory ; Bryant, MacKenzie ; Toronczak, Julia ; Schwartz, Tara ; Oliveira, Michelli F. ; Heaton, Robert ; Grant, Igor ; Gianella, Sara ; Letendre, Scott ; Swafford, Austin ; Dorrestein, Pieter C. ; Knight, Rob
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2025-03, Vol.10 (3), p.e0130524
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Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome
Author / Creator:Allaband, Celeste ; Lingaraju, Amulya ; Martino, Cameron ; Russell, Baylee ; Tripathi, Anupriya ; Poulsen, Orit ; Dantas Machado, Ana Carolina ; Zhou, Dan ; Xue, Jin ; Elijah, Emmanuel ; Malhotra, Atul ; Dorrestein, Pieter C. ; Knight, Rob ; Haddad, Gabriel G. ; Zarrinpar, Amir
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2021-06, Vol.6 (3), p.e0011621-e0011621
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Calour: an Interactive, Microbe-Centric Analysis Tool
Author / Creator:Xu, Zhenjiang Zech ; Amir, Amnon ; Sanders, Jon ; Zhu, Qiyun ; Morton, James T. ; Bletz, Molly C. ; Tripathi, Anupriya ; Huang, Shi ; McDonald, Daniel ; Jiang, Lingjing ; Knight, Rob
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2019-01, Vol.4 (1)
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Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems
Author / Creator:Tripathi, Anupriya ; Xu, Zhenjiang Zech ; Xue, Jin ; Poulsen, Orit ; Gonzalez, Antonio ; Humphrey, Gregory ; Meehan, Michael J. ; Melnik, Alexey V. ; Ackermann, Gail ; Zhou, Dan ; Malhotra, Atul ; Haddad, Gabriel G. ; Dorrestein, Pieter C. ; Knight, Rob
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2019-03, Vol.4 (2)
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EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets
Author / Creator:Cantrell, Kalen ; Fedarko, Marcus W. ; Rahman, Gibraan ; McDonald, Daniel ; Yang, Yimeng ; Zaw, Thant ; Gonzalez, Antonio ; Janssen, Stefan ; Estaki, Mehrbod ; Haiminen, Niina ; Beck, Kristen L. ; Zhu, Qiyun ; Sayyari, Erfan ; Morton, James T. ; Armstrong, George ; Tripathi, Anupriya ; Gauglitz, Julia M. ; Marotz, Clarisse ; Matteson, Nathaniel L. ; Martino, Cameron ; Sanders, Jon G. ; Carrieri, Anna Paola ; Song, Se Jin ; Swafford, Austin D. ; Dorrestein, Pieter C. ; Andersen, Kristian G. ; Parida, Laxmi ; Kim, Ho-Cheol ; Vázquez-Baeza, Yoshiki ; Knight, Rob
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2021-03, Vol.6 (2)
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Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs
Author / Creator:Gauglitz, Julia M. ; Morton, James T. ; Tripathi, Anupriya ; Hansen, Shalisa ; Gaffney, Michele ; Carpenter, Carolina ; Weldon, Kelly C. ; Shah, Riya ; Parampil, Amy ; Fidgett, Andrea L. ; Swafford, Austin D. ; Knight, Rob ; Dorrestein, Pieter C.
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2020-03, Vol.5 (2)
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Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome
Author / Creator:Taylor, Bryn C. ; Weldon, Kelly C. ; Ellis, Ronald J. ; Franklin, Donald ; Groth, Tobin ; Gentry, Emily C. ; Tripathi, Anupriya ; McDonald, Daniel ; Humphrey, Gregory ; Bryant, MacKenzie ; Toronczak, Julia ; Schwartz, Tara ; Oliveira, Michelli F. ; Heaton, Robert ; Grant, Igor ; Gianella, Sara ; Letendre, Scott ; Swafford, Austin ; Dorrestein, Pieter C. ; Knight, Rob
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2020-09, Vol.5 (5)
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Baseline microbiome and metabolome are associated with response to ITIS diet in an exploratory trial in patients with rheumatoid arthritis
Author / Creator:Coras, Roxana ; Martino, Cameron ; Gauglitz, Julia M. ; Cedola, Francesca ; Tripathi, Anupriya ; Jarmusch, Alan K. ; Alharthi, Maram ; Fernandez‐Bustamante, Marta ; Agustin‐Perez, Meritxell ; Singh, Abha ; Choi, Soo‐In ; Rivera, Tania ; Nguyen, Katherine ; Shekhtman, Tatyana ; Holt, Tiffany ; Lee, Susan ; Golshan, Shahrokh ; Dorrestein, Pieter C. ; Knight, Rob ; Guma, Monica
Publisher:United States: John Wiley & Sons, Inc
Journal title:Clinical and translational medicine, 2022-07, Vol.12 (7), p.e959-n/a
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Chemical Gradients of Plant Substrates in an Atta texana Fungus Garden
Author / Creator:Caraballo-Rodríguez, Andrés Mauricio ; Puckett, Sara P. ; Kyle, Kathleen E. ; Petras, Daniel ; da Silva, Ricardo ; Nothias, Louis-Félix ; Ernst, Madeleine ; van der Hooft, Justin J. J. ; Tripathi, Anupriya ; Wang, Mingxun ; Balunas, Marcy J. ; Klassen, Jonathan L. ; Dorrestein, Pieter C.
Publisher:1752 N St., N.W., Washington, DC: American Society for Microbiology
Journal title:mSystems, 2021-08, Vol.6 (4)
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Chemical Gradients of Plant Substrates in an Atta texana Fungus Garden
Author / Creator:Caraballo-Rodríguez, Andrés Mauricio ; Puckett, Sara P. ; Kyle, Kathleen E. ; Petras, Daniel ; da Silva, Ricardo ; Nothias, Louis-Félix ; Ernst, Madeleine ; van der Hooft, Justin J. J. ; Tripathi, Anupriya ; Wang, Mingxun ; Balunas, Marcy J. ; Klassen, Jonathan L. ; Dorrestein, Pieter C.
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2021-08, Vol.6 (4), p.e0060121-e0060121
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Showing 1 to 20 of 40 results

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A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease

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A Novel Sparse Compositional Technique Reveals Microbial Perturbations

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Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

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Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction

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Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

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Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome

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Differential gut microbiota composition in β-Thalassemia patients and its correlation with iron overload

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Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides

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Experimental Chagas disease-induced perturbations of the fecal microbiome and metabolome

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An untargeted metabolomics analysis of exogenous chemicals in human milk and transfer to the infant

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Correction for Taylor et al., “Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome”

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Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome

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Calour: an Interactive, Microbe-Centric Analysis Tool

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Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems

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EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets

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Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs

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Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

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Baseline microbiome and metabolome are associated with response to ITIS diet in an exploratory trial in patients with rheumatoid arthritis

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Chemical Gradients of Plant Substrates in an Atta texana Fungus Garden

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Chemical Gradients of Plant Substrates in an Atta texana Fungus Garden

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