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ArticlesPeer ReviewedFull Text
DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture
Author / Creator:Sharma, Alok ; Vans, Edwin ; Shigemizu, Daichi ; Boroevich, Keith A. ; Tsunoda, Tatsuhiko
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-08, Vol.9 (1), p.11399-7, Article 11399
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An improved discriminative filter bank selection approach for motor imagery EEG signal classification using mutual information
Author / Creator:Kumar, Shiu ; Sharma, Alok ; Tsunoda, Tatsuhiko
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2017-12, Vol.18 (S16), p.545-137, Article 545
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Brain wave classification using long short-term memory network based OPTICAL predictor
Author / Creator:Kumar, Shiu ; Sharma, Alok ; Tsunoda, Tatsuhiko
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-06, Vol.9 (1), p.9153-13, Article 9153
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Forecasting the spread of COVID-19 using LSTM network
Author / Creator:Kumar, Shiu ; Sharma, Ronesh ; Tsunoda, Tatsuhiko ; Kumarevel, Thirumananseri ; Sharma, Alok
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2021-06, Vol.22 (S6), p.316-9, Article 316
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ArticlesPeer ReviewedFull Text
PepCNN deep learning tool for predicting peptide binding residues in proteins using sequence, structural, and language model features
Author / Creator:Chandra, Abel ; Sharma, Alok ; Dehzangi, Iman ; Tsunoda, Tatsuhiko ; Sattar, Abdul
Publisher:London: Springer Science and Business Media LLC
Journal title:Scientific Reports, 2023-11, Vol.13 (1), p.20882-14, Article 20882
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DeepFeature: feature selection in nonimage data using convolutional neural network
Author / Creator:Sharma, Alok ; Lysenko, Artem ; Boroevich, Keith A ; Vans, Edwin ; Tsunoda, Tatsuhiko
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2021-11, Vol.22 (6)
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DeepInsight-3D architecture for anti-cancer drug response prediction with deep-learning on multi-omics
Author / Creator:Sharma, Alok ; Lysenko, Artem ; Boroevich, Keith A. ; Tsunoda, Tatsuhiko
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-02, Vol.13 (1), p.2483-14, Article 2483
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Profiling the inhibitory receptors LAG-3, TIM-3, and TIGIT in renal cell carcinoma reveals malignancy
Author / Creator:Takamatsu, Kimiharu ; Tanaka, Nobuyuki ; Hakozaki, Kyohei ; Takahashi, Ryohei ; Teranishi, Yu ; Murakami, Tetsushi ; Kufukihara, Ryohei ; Niwa, Naoya ; Mikami, Shuji ; Shinojima, Toshiaki ; Sasaki, Takashi ; Sato, Yusuke ; Kume, Haruki ; Ogawa, Seishi ; Kakimi, Kazuhiro ; Kamatani, Takashi ; Miya, Fuyuki ; Tsunoda, Tatsuhiko ; Aimono, Eriko ; Nishihara, Hiroshi ; Sawada, Kazuaki ; Imamura, Takeshi ; Mizuno, Ryuichi ; Oya, Mototsugu
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-09, Vol.12 (1), p.5547-12, Article 5547
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ArticlesPeer ReviewedFull Text
SPECTRA: a tool for enhanced brain wave signal recognition
Author / Creator:Kumar, Shiu ; Tsunoda, Tatsuhiko ; Sharma, Alok
Publisher:London: Springer Science and Business Media LLC
Journal title:BMC Bioinformatics, 2021-06, Vol.22 (S6), p.1-21, Article 195
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Integrated molecular analysis of clear-cell renal cell carcinoma
Author / Creator:Sato, Yusuke ; Yoshizato, Tetsuichi ; Shiraishi, Yuichi ; Maekawa, Shigekatsu ; Okuno, Yusuke ; Kamura, Takumi ; Shimamura, Teppei ; Sato-Otsubo, Aiko ; Nagae, Genta ; Suzuki, Hiromichi ; Nagata, Yasunobu ; Yoshida, Kenichi ; Kon, Ayana ; Suzuki, Yutaka ; Chiba, Kenichi ; Tanaka, Hiroko ; Niida, Atsushi ; Fujimoto, Akihiro ; Tsunoda, Tatsuhiko ; Morikawa, Teppei ; Maeda, Daichi ; Kume, Haruki ; Sugano, Sumio ; Fukayama, Masashi ; Aburatani, Hiroyuki ; Sanada, Masashi ; Miyano, Satoru ; Homma, Yukio ; Ogawa, Seishi
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2013-08, Vol.45 (8), p.860-867
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ArticlesPeer ReviewedFull Text
Divisive hierarchical maximum likelihood clustering
Author / Creator:Sharma, Alok ; López, Yosvany ; Tsunoda, Tatsuhiko
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2017-12, Vol.18 (S16), p.546-147, Article 546
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ArticlesPeer ReviewedFull Text
Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions
Author / Creator:Sharma, Ronesh ; Sharma, Alok ; Patil, Ashwini ; Tsunoda, Tatsuhiko
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2019-02, Vol.19 (S13), p.378-163, Article 378
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Improving succinylation prediction accuracy by incorporating the secondary structure via helix, strand and coil, and evolutionary information from profile bigrams
Author / Creator:Dehzangi, Abdollah ; López, Yosvany ; Lal, Sunil Pranit ; Taherzadeh, Ghazaleh ; Sattar, Abdul ; Tsunoda, Tatsuhiko ; Sharma, Alok
Publisher:United States: Public Library of Science
Journal title:PloS one, 2018-02, Vol.13 (2), p.e0191900
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Landscape of prognostic signatures and immunogenomics of the AXL/GAS6 axis in renal cell carcinoma
Author / Creator:Hakozaki Kyohei ; Tanaka, Nobuyuki ; Takamatsu Kimiharu ; Takahashi, Ryohei ; Yasumizu Yota ; Mikami Shuji ; Shinojima Toshiaki ; Kakimi Kazuhiro ; Kamatani Takashi ; Fuyuki, Miya ; Tsunoda Tatsuhiko ; Aimono Eriko ; Nishihara, Hiroshi ; Mizuno Ryuichi ; Oya Mototsugu
Publisher:London: Nature Publishing Group
Journal title:British journal of cancer, 2021-11, Vol.125 (11), p.1533-1543
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Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility
Author / Creator:Chung, Suyoun ; Nakagawa, Hidewaki ; Uemura, Motohide ; Piao, Lianhua ; Ashikawa, Kyota ; Hosono, Naoya ; Takata, Ryo ; Akamatsu, Shusuke ; Kawaguchi, Takahisa ; Morizono, Takashi ; Tsunoda, Tatsuhiko ; Daigo, Yataro ; Matsuda, Koichi ; Kamatani, Naoyuki ; Nakamura, Yusuke ; Kubo, Michiaki
Publisher:Oxford, UK: Blackwell Publishing Ltd
Journal title:Cancer science, 2011-01, Vol.102 (1), p.245-252
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Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators
Author / Creator:Fujimoto, Akihiro ; Totoki, Yasushi ; Abe, Tetsuo ; Boroevich, Keith A ; Hosoda, Fumie ; Nguyen, Ha Hai ; Aoki, Masayuki ; Hosono, Naoya ; Kubo, Michiaki ; Miya, Fuyuki ; Arai, Yasuhito ; Takahashi, Hiroyuki ; Shirakihara, Takuya ; Nagasaki, Masao ; Shibuya, Tetsuo ; Nakano, Kaoru ; Watanabe-Makino, Kumiko ; Tanaka, Hiroko ; Nakamura, Hiromi ; Kusuda, Jun ; Ojima, Hidenori ; Shimada, Kazuaki ; Okusaka, Takuji ; Ueno, Masaki ; Shigekawa, Yoshinobu ; Kawakami, Yoshiiku ; Arihiro, Koji ; Ohdan, Hideki ; Gotoh, Kunihito ; Ishikawa, Osamu ; Ariizumi, Shun-ichi ; Yamamoto, Masakazu ; Yamada, Terumasa ; Chayama, Kazuaki ; Kosuge, Tomoo ; Yamaue, Hiroki ; Kamatani, Naoyuki ; Miyano, Satoru ; Nakagama, Hitoshi ; Nakamura, Yusuke ; Tsunoda, Tatsuhiko ; Shibata, Tatsuhiro ; Nakagawa, Hidewaki
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2012-07, Vol.44 (7), p.760-764
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Polygenic burdens on cell-specific pathways underlie the risk of rheumatoid arthritis
Author / Creator:Ishigaki, Kazuyoshi ; Kochi, Yuta ; Suzuki, Akari ; Tsuchida, Yumi ; Tsuchiya, Haruka ; Sumitomo, Shuji ; Yamaguchi, Kensuke ; Nagafuchi, Yasuo ; Nakachi, Shinichiro ; Kato, Rika ; Sakurai, Keiichi ; Shoda, Hirofumi ; Ikari, Katsunori ; Taniguchi, Atsuo ; Yamanaka, Hisashi ; Miya, Fuyuki ; Tsunoda, Tatsuhiko ; Okada, Yukinori ; Momozawa, Yukihide ; Kamatani, Yoichiro ; Yamada, Ryo ; Kubo, Michiaki ; Fujio, Keishi ; Yamamoto, Kazuhiko
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2017-07, Vol.49 (7), p.1120-1125
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Association between high immune activity and worse prognosis in uveal melanoma and low-grade glioma in TCGA transcriptomic data
Author / Creator:Matsuo, Hitoshi ; Kamatani, Takashi ; Hamba, Yu ; Boroevich, Keith A. ; Tsunoda, Tatsuhiko
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2022-05, Vol.23 (1), p.351-10, Article 351
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Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease
Author / Creator:Satake, Wataru ; Nakabayashi, Yuko ; Mizuta, Ikuko ; Hirota, Yushi ; Ito, Chiyomi ; Kubo, Michiaki ; Kawaguchi, Takahisa ; Tsunoda, Tatsuhiko ; Watanabe, Masahiko ; Takeda, Atsushi ; Tomiyama, Hiroyuki ; Nakashima, Kenji ; Hasegawa, Kazuko ; Obata, Fumiya ; Yoshikawa, Takeo ; Kawakami, Hideshi ; Sakoda, Saburo ; Yamamoto, Mitsutoshi ; Hattori, Nobutaka ; Murata, Miho ; Nakamura, Yusuke ; Toda, Tatsushi
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2009-12, Vol.41 (12), p.1303-1307
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ArticlesPeer ReviewedFull Text
Success: evolutionary and structural properties of amino acids prove effective for succinylation site prediction
Author / Creator:López, Yosvany ; Sharma, Alok ; Dehzangi, Abdollah ; Lal, Sunil Pranit ; Taherzadeh, Ghazaleh ; Sattar, Abdul ; Tsunoda, Tatsuhiko
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2018-01, Vol.19 (S1), p.923-114, Article 923
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Showing 1 to 20 of 212 results

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DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture

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An improved discriminative filter bank selection approach for motor imagery EEG signal classification using mutual information

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Brain wave classification using long short-term memory network based OPTICAL predictor

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Forecasting the spread of COVID-19 using LSTM network

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PepCNN deep learning tool for predicting peptide binding residues in proteins using sequence, structural, and language model features

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DeepFeature: feature selection in nonimage data using convolutional neural network

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DeepInsight-3D architecture for anti-cancer drug response prediction with deep-learning on multi-omics

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Profiling the inhibitory receptors LAG-3, TIM-3, and TIGIT in renal cell carcinoma reveals malignancy

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SPECTRA: a tool for enhanced brain wave signal recognition

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Integrated molecular analysis of clear-cell renal cell carcinoma

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Divisive hierarchical maximum likelihood clustering

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Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions

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Improving succinylation prediction accuracy by incorporating the secondary structure via helix, strand and coil, and evolutionary information from profile bigrams

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Landscape of prognostic signatures and immunogenomics of the AXL/GAS6 axis in renal cell carcinoma

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Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility

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Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators

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Polygenic burdens on cell-specific pathways underlie the risk of rheumatoid arthritis

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Association between high immune activity and worse prognosis in uveal melanoma and low-grade glioma in TCGA transcriptomic data

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Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease

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Success: evolutionary and structural properties of amino acids prove effective for succinylation site prediction

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