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ArticlesPeer ReviewedFull Text
Alignment-free sequence comparison: benefits, applications, and tools
Author / Creator:Zielezinski, Andrzej ; Vinga, Susana ; Almeida, Jonas ; Karlowski, Wojciech M.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2017-10, Vol.18 (1), p.186-186, Article 186
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Tracking intratumoral heterogeneity in glioblastoma via regularized classification of single-cell RNA-Seq data
Author / Creator:Lopes, Marta B. ; Vinga, Susana
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2020-02, Vol.21 (1), p.59-12, Article 59
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Benchmarking of alignment-free sequence comparison methods
Author / Creator:Zielezinski, Andrzej ; Girgis, Hani Z. ; Bernard, Guillaume ; Leimeister, Chris-Andre ; Tang, Kujin ; Dencker, Thomas ; Lau, Anna Katharina ; Röhling, Sophie ; Choi, Jae Jin ; Waterman, Michael S. ; Comin, Matteo ; Kim, Sung-Hou ; Vinga, Susana ; Almeida, Jonas S. ; Chan, Cheong Xin ; James, Benjamin T. ; Sun, Fengzhu ; Morgenstern, Burkhard ; Karlowski, Wojciech M.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2019-07, Vol.20 (1), p.144-144, Article 144
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A Review of Recent Machine Learning Advances for Forecasting Harmful Algal Blooms and Shellfish Contamination
Author / Creator:Cruz, Rafaela C. ; Reis Costa, Pedro ; Vinga, Susana ; Krippahl, Ludwig ; Lopes, Marta B.
Publisher:MDPI AG
Journal title:Journal of marine science and engineering, 2021-03, Vol.9 (3), p.283
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Improving Protein Expression Prediction Using Extra Features and Ensemble Averaging
Author / Creator:Fernandes, Armando ; Vinga, Susana
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-03, Vol.11 (3), p.e0150369
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Twiner: correlation-based regularization for identifying common cancer gene signatures
Author / Creator:B. Lopes, Marta ; Cara de Anjo Casimiro, Sandra Cristina ; Vinga, Susana
Publisher:England: Springer Nature
Journal title:BMC bioinformatics, 2019-06, Vol.20 (1), p.356-15, Article 356
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Synthetic augmentation of cancer cell line multi-omic datasets using unsupervised deep learning
Author / Creator:Cai, Zhaoxiang ; Apolinário, Sofia ; Baião, Ana R. ; Pacini, Clare ; Sousa, Miguel D. ; Vinga, Susana ; Reddel, Roger R. ; Robinson, Phillip J. ; Garnett, Mathew J. ; Zhong, Qing ; Gonçalves, Emanuel
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-11, Vol.15 (1), p.10390-12, Article 10390
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Author Correction: Synthetic augmentation of cancer cell line multi-omic datasets using unsupervised deep learning
Author / Creator:Cai, Zhaoxiang ; Apolinário, Sofia ; Baião, Ana R. ; Pacini, Clare ; Sousa, Miguel D. ; Vinga, Susana ; Reddel, Roger R. ; Robinson, Phillip J. ; Garnett, Mathew J. ; Zhong, Qing ; Gonçalves, Emanuel
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2025-02, Vol.16 (1), p.1352-1, Article 1352
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Arthroscopic Superior Capsular Reconstruction With a Minimally Invasive Harvested Fascia Lata Autograft Produces Good Clinical Results
Author / Creator:de Campos Azevedo, Clara Isabel ; Ângelo, Ana Catarina Leiria Pires Gago ; Vinga, Susana
Publisher:Los Angeles, CA: SAGE Publications
Journal title:Orthopaedic journal of sports medicine, 2018-11, Vol.6 (11), p.2325967118808242
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Global Meta-Analysis of Transcriptomics Studies
Author / Creator:Caldas, José ; Vinga, Susana
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-02, Vol.9 (2), p.e89318
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Enhancing Prognostic Signatures in Glioblastoma with Feature Selection and Regularised Cox Regression
Author / Creator:Leitão, Beatriz N. ; Veríssimo, André ; Carvalho, Alexandra M. ; Vinga, Susana
Publisher:Switzerland: MDPI AG
Journal title:Genes, 2025-04, Vol.16 (5), p.473
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Ensemble outlier detection and gene selection in triple-negative breast cancer data
Author / Creator:B. Lopes, Marta ; Veríssimo, André ; Ganhão Carrasquinha Trigueirão, Eunice Isabel ; Cara de Anjo Casimiro, Sandra Cristina ; Beerenwinkel, Niko ; Vinga, Susana
Publisher:England: Springer Nature
Journal title:BMC bioinformatics, 2018-05, Vol.19 (1), p.168-15, Article 168
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Identification of biomarkers predictive of metastasis development in early-stage colorectal cancer using network-based regularization
Author / Creator:Peixoto, Carolina ; Lopes, Marta B. ; Martins, Marta ; Casimiro, Sandra ; Sobral, Daniel ; Grosso, Ana Rita ; Abreu, Catarina ; Macedo, Daniela ; Costa, Ana Lúcia ; Pais, Helena ; Alvim, Cecília ; Mansinho, André ; Filipe, Pedro ; Costa, Pedro Marques da ; Fernandes, Afonso ; Borralho, Paula ; Ferreira, Cristina ; Malaquias, João ; Quintela, António ; Kaplan, Shannon ; Golkaram, Mahdi ; Salmans, Michael ; Khan, Nafeesa ; Vijayaraghavan, Raakhee ; Zhang, Shile ; Pawlowski, Traci ; Godsey, Jim ; So, Alex ; Liu, Li ; Costa, Luís ; Vinga, Susana
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2023-01, Vol.24 (1), p.17-23, Article 17
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ArticlesPeer ReviewedFull Text
Time-Lagged Correlation Analysis of Shellfish Toxicity Reveals Predictive Links to Adjacent Areas, Species, and Environmental Conditions
Author / Creator:Patrício, André ; Lopes, Marta B. ; Costa, Pedro Reis ; Costa, Rafael S. ; Henriques, Rui ; Vinga, Susana
Publisher:Basel: MDPI AG
Journal title:Toxins, 2022-09, Vol.14 (10), p.679
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ArticlesPeer ReviewedFull Text
Kidney Cancer Biomarker Selection Using Regularized Survival Models
Author / Creator:Peixoto, Carolina ; Martins, Marta ; Costa, Luís ; Vinga, Susana
Publisher:Basel: MDPI AG
Journal title:Cells (Basel, Switzerland), 2022-07, Vol.11 (15), p.2311
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MOMO - multi-objective metabolic mixed integer optimization: application to yeast strain engineering
Author / Creator:Andrade, Ricardo ; Doostmohammadi, Mahdi ; Santos, João L. ; Sagot, Marie-France ; Mira, Nuno P. ; Vinga, Susana
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2020-02, Vol.21 (1), p.69-13, Article 69
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Dynamic modeling of bone remodeling, osteolytic metastasis and PK/PD therapy: introducing variable order derivatives as a simplification technique
Author / Creator:Neto, Joana Pinheiro ; Alho Irina ; Costa, Luís ; Casimiro, Sandra ; Duarte, Valério ; Vinga Susana
Publisher:Heidelberg: Springer Nature B.V
Journal title:Journal of mathematical biology, 2021-10, Vol.83 (4)
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ArticlesPeer ReviewedFull Text
Updating TCGA glioma classification through integration of molecular data following the latest WHO guidelines
Author / Creator:de Mendonça, Mónica Leiria ; Coletti, Roberta ; Gonçalves, Céline S. ; Martins, Eduarda P. ; Costa, Bruno M. ; Vinga, Susana ; Lopes, Marta B.
Publisher:England: Nature Publishing Group
Journal title:Scientific data, 2025-06, Vol.12 (1), p.935-10, Article 935
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Inferring Diagnostic and Prognostic Gene Expression Signatures Across WHO Glioma Classifications: A Network-Based Approach
Author / Creator:Coletti, Roberta ; Leiria de Mendonça, Mónica ; Vinga, Susana ; Lopes, Marta B.
Publisher:London, England: SAGE Publications
Journal title:Bioinformatics and biology insights, 2024-01, Vol.18, p.11779322241271535
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AliClu - Temporal sequence alignment for clustering longitudinal clinical data
Author / Creator:Rama, Kishan ; Canhão, Helena ; Carvalho, Alexandra M. ; Vinga, Susana
Publisher:England: BioMed Central Ltd
Journal title:BMC medical informatics and decision making, 2019-12, Vol.19 (1), p.289-11, Article 289
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Showing 1 to 20 of 69 results

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Alignment-free sequence comparison: benefits, applications, and tools

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Tracking intratumoral heterogeneity in glioblastoma via regularized classification of single-cell RNA-Seq data

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Benchmarking of alignment-free sequence comparison methods

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A Review of Recent Machine Learning Advances for Forecasting Harmful Algal Blooms and Shellfish Contamination

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Improving Protein Expression Prediction Using Extra Features and Ensemble Averaging

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Twiner: correlation-based regularization for identifying common cancer gene signatures

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Synthetic augmentation of cancer cell line multi-omic datasets using unsupervised deep learning

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Author Correction: Synthetic augmentation of cancer cell line multi-omic datasets using unsupervised deep learning

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Arthroscopic Superior Capsular Reconstruction With a Minimally Invasive Harvested Fascia Lata Autograft Produces Good Clinical Results

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Global Meta-Analysis of Transcriptomics Studies

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Enhancing Prognostic Signatures in Glioblastoma with Feature Selection and Regularised Cox Regression

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Ensemble outlier detection and gene selection in triple-negative breast cancer data

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Identification of biomarkers predictive of metastasis development in early-stage colorectal cancer using network-based regularization

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Time-Lagged Correlation Analysis of Shellfish Toxicity Reveals Predictive Links to Adjacent Areas, Species, and Environmental Conditions

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Kidney Cancer Biomarker Selection Using Regularized Survival Models

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MOMO - multi-objective metabolic mixed integer optimization: application to yeast strain engineering

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Dynamic modeling of bone remodeling, osteolytic metastasis and PK/PD therapy: introducing variable order derivatives as a simplification technique

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Updating TCGA glioma classification through integration of molecular data following the latest WHO guidelines

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Inferring Diagnostic and Prognostic Gene Expression Signatures Across WHO Glioma Classifications: A Network-Based Approach

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AliClu - Temporal sequence alignment for clustering longitudinal clinical data

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