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ArticlesPeer ReviewedFull Text
Mapping the Epigenetic Basis of Complex Traits
Author / Creator:Cortijo, Sandra ; Wardenaar, René ; Colomé-Tatché, Maria ; Gilly, Arthur ; Etcheverry, Mathilde ; Labadie, Karine ; Caillieux, Erwann ; Hospital, Fréderic ; Aury, Jean-Marc ; Wincker, Patrick ; Roudier, François ; Jansen, Ritsert C. ; Colot, Vincent ; Johannes, Frank
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2014-03, Vol.343 (6175), p.1145-1148
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A living biobank of ovarian cancer ex vivo models reveals profound mitotic heterogeneity
Author / Creator:Nelson, Louisa ; Tighe, Anthony ; Golder, Anya ; Littler, Samantha ; Bakker, Bjorn ; Moralli, Daniela ; Murtuza Baker, Syed ; Donaldson, Ian J. ; Spierings, Diana C. J. ; Wardenaar, René ; Neale, Bethanie ; Burghel, George J. ; Winter-Roach, Brett ; Edmondson, Richard ; Clamp, Andrew R. ; Jayson, Gordon C. ; Desai, Sudha ; Green, Catherine M. ; Hayes, Andy ; Foijer, Floris ; Morgan, Robert D. ; Taylor, Stephen S.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-02, Vol.11 (1), p.822-822, Article 822
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cGAS–STING drives the IL-6-dependent survival of chromosomally instable cancers
Author / Creator:Hong, Christy ; Schubert, Michael ; Tijhuis, Andréa E. ; Requesens, Marta ; Roorda, Maurits ; van den Brink, Anouk ; Ruiz, Lorena Andrade ; Bakker, Petra L. ; van der Sluis, Tineke ; Pieters, Wietske ; Chen, Mengting ; Wardenaar, René ; van der Vegt, Bert ; Spierings, Diana C. J. ; de Bruyn, Marco ; van Vugt, Marcel A. T. M. ; Foijer, Floris
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2022-07, Vol.607 (7918), p.366-373
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Rate, spectrum, and evolutionary dynamics of spontaneous epimutations
Author / Creator:van der Graaf, Adriaan ; Wardenaar, René ; Neumann, Drexel A. ; Taudt, Aaron ; Shaw, Ruth G. ; Jansen, Ritsert C. ; Schmitz, Robert J. ; Colomé-Tatché, Maria ; Johannes, Frank
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2015-05, Vol.112 (21), p.6676-6681
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ArticlesPeer ReviewedFull Text
Methylome evolution in plants
Author / Creator:Vidalis, Amaryllis ; Živković, Daniel ; Wardenaar, René ; Roquis, David ; Tellier, Aurélien ; Johannes, Frank
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2016-12, Vol.17 (1), p.264-264, Article 264
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Genetic instability from a single S phase after whole-genome duplication
Author / Creator:Gemble, Simon ; Wardenaar, René ; Keuper, Kristina ; Srivastava, Nishit ; Nano, Maddalena ; Macé, Anne-Sophie ; Tijhuis, Andréa E. ; Bernhard, Sara Vanessa ; Spierings, Diana C. J. ; Simon, Anthony ; Goundiam, Oumou ; Hochegger, Helfrid ; Piel, Matthieu ; Foijer, Floris ; Storchová, Zuzana ; Basto, Renata
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2022-04, Vol.604 (7904), p.146-151
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Short-term molecular consequences of chromosome mis-segregation for genome stability
Author / Creator:Garribba, Lorenza ; De Feudis, Giuseppina ; Martis, Valentino ; Galli, Martina ; Dumont, Marie ; Eliezer, Yonatan ; Wardenaar, René ; Ippolito, Marica Rosaria ; Iyer, Divya Ramalingam ; Tijhuis, Andréa E. ; Spierings, Diana C. J. ; Schubert, Michael ; Taglietti, Silvia ; Soriani, Chiara ; Gemble, Simon ; Basto, Renata ; Rhind, Nick ; Foijer, Floris ; Ben-David, Uri ; Fachinetti, Daniele ; Doksani, Ylli ; Santaguida, Stefano
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-03, Vol.14 (1), p.1353-1353, Article 1353
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Aneuploidy renders cancer cells vulnerable to mitotic checkpoint inhibition
Author / Creator:Cohen-Sharir, Yael ; McFarland, James M. ; Abdusamad, Mai ; Marquis, Carolyn ; Bernhard, Sara V. ; Kazachkova, Mariya ; Tang, Helen ; Ippolito, Marica R. ; Laue, Kathrin ; Zerbib, Johanna ; Malaby, Heidi L. H. ; Jones, Andrew ; Stautmeister, Lisa-Marie ; Bockaj, Irena ; Wardenaar, René ; Lyons, Nicholas ; Nagaraja, Ankur ; Bass, Adam J. ; Spierings, Diana C. J. ; Foijer, Floris ; Beroukhim, Rameen ; Santaguida, Stefano ; Golub, Todd R. ; Stumpff, Jason ; Storchová, Zuzana ; Ben-David, Uri
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2021-02, Vol.590 (7846), p.486-491
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Replication stress generates distinctive landscapes of DNA copy number alterations and chromosome scale losses
Author / Creator:Shaikh, Nadeem ; Mazzagatti, Alice ; De Angelis, Simone ; Johnson, Sarah C ; Bakker, Bjorn ; Spierings, Diana C J ; Wardenaar, René ; Maniati, Eleni ; Wang, Jun ; Boemo, Michael A ; Foijer, Floris ; McClelland, Sarah E
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2022-10, Vol.23 (1), p.223-223, Article 223
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Parental DNA Methylation States Are Associated with Heterosis in Epigenetic Hybrids
Author / Creator:Lauss, Kathrin ; Wardenaar, René ; Oka, Rurika ; van Hulten, Marieke H. A. ; Guryev, Victor ; Keurentjes, Joost J. B. ; Stam, Maike ; Johannes, Frank
Publisher:United States: American Society of Plant Biologists
Journal title:Plant physiology (Bethesda), 2018-02, Vol.176 (2), p.1627-1645
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ArticlesPeer ReviewedFull Text
Epigenetic Basis of Morphological Variation and Phenotypic Plasticity in Arabidopsis thaliana
Author / Creator:Kooke, Rik ; Johannes, Frank ; Wardenaar, René ; Becker, Frank ; Etcheverry, Mathilde ; Colot, Vincent ; Vreugdenhil, Dick ; Keurentjes, Joost J.B.
Publisher:United States: American Society of Plant Biologists
Journal title:The Plant cell, 2015-02, Vol.27 (2), p.337-348
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Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation
Author / Creator:Colomé-Tatché, Maria ; Cortijo, Sandra ; Wardenaar, René ; Morgado, Lionel ; Lahouze, Benoit ; Sarazin, Alexis ; Etcheverry, Mathilde ; Martin, Antoine ; Feng, Suhua ; Duvernois-Berthet, Evelyne ; Labadie, Karine ; Wincker, Patrick ; Jacobsen, Steven E ; Jansen, Ritsert C ; Colot, Vincent ; Johannes, Frank
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2012-10, Vol.109 (40), p.16240-16245
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Neoadjuvant immune checkpoint blockade in women with mismatch repair deficient endometrial cancer: a phase I study
Author / Creator:Eerkens, Anneke L. ; Brummel, Koen ; Vledder, Annegé ; Paijens, Sterre T. ; Requesens, Marta ; Loiero, Dominik ; van Rooij, Nienke ; Plat, Annechien ; Haan, Floris-Jan ; Klok, Patty ; Yigit, Refika ; Roelofsen, Thijs ; de Lange, Natascha M. ; Klomp, Rie ; Church, David ; ter Elst, Arja ; Wardenaar, René ; Spierings, Diana ; Foijer, Floris ; Koelzer, Viktor Hendrik ; Bosse, Tjalling ; Bart, Joost ; Jalving, Mathilde ; Reyners, Anna K. L. ; de Bruyn, Marco ; Nijman, Hans W.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-09, Vol.15 (1), p.7695-17
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Neurodegeneration-associated protein VAPB regulates proliferation in medulloblastoma
Author / Creator:Faria Assoni, Amanda ; Giove Mitsugi, Thiago ; Wardenaar, René ; Oliveira Ferreira, Raiane ; Farias Jandrey, Elisa Helena ; Machado Novaes, Gabriela ; Fonseca de Oliveira Granha, Isabela ; Bakker, Petra ; Kaid, Carolini ; Zatz, Mayana ; Foijer, Floris ; Keith Okamoto, Oswaldo
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-11, Vol.13 (1), p.19481-19481, Article 19481
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METHimpute: imputation-guided construction of complete methylomes from WGBS data
Author / Creator:Taudt, Aaron ; Roquis, David ; Vidalis, Amaryllis ; Wardenaar, René ; Johannes, Frank ; Colome-Tatché-Tatché, Maria
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2018-06, Vol.19 (1), p.444-14, Article 444
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Genome-wide epigenetic perturbation jump-starts patterns of heritable variation found in nature
Author / Creator:Roux, Fabrice ; Colomé-Tatché, Maria ; Edelist, Cécile ; Wardenaar, René ; Guerche, Philippe ; Hospital, Frédéric ; Colot, Vincent ; Jansen, Ritsert C ; Johannes, Frank
Publisher:United States: Genetics Society of America
Journal title:Genetics (Austin), 2011-08, Vol.188 (4), p.1015-1017
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Replication catastrophe is responsible for intrinsic PAR glycohydrolase inhibitor-sensitivity in patient-derived ovarian cancer models
Author / Creator:Coulson-Gilmer, Camilla ; Morgan, Robert D ; Nelson, Louisa ; Barnes, Bethany M ; Tighe, Anthony ; Wardenaar, René ; Spierings, Diana C J ; Schlecht, Helene ; Burghel, George J ; Foijer, Floris ; Desai, Sudha ; McGrail, Joanne C ; Taylor, Stephen S
Publisher:England: BioMed Central Ltd
Journal title:Journal of experimental & clinical cancer research, 2021-10, Vol.40 (1), p.323-323, Article 323
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IFNγ protects motor neurons from oxidative stress via enhanced global protein synthesis in FUS‐associated amyotrophic lateral sclerosis
Author / Creator:Assoni, Amanda Faria ; Guerrero, Erika N. ; Wardenaar, René ; Oliveira, Danyllo ; Bakker, Petra L. ; Alves, Luciana M. ; Carvalho, Valdemir M. ; Okamoto, Oswaldo Keith ; Zatz, Mayana ; Foijer, Floris
Publisher:Switzerland: John Wiley & Sons, Inc
Journal title:Brain pathology (Zurich, Switzerland), 2024-01, Vol.34 (1), p.e13206-n/a
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TP53 loss initiates chromosomal instability in fallopian tube epithelial cells
Author / Creator:Bronder, Daniel ; Tighe, Anthony ; Wangsa, Darawalee ; Zong, Dali ; Meyer, Thomas J ; Wardenaar, René ; Minshall, Paul ; Hirsch, Daniela ; Heselmeyer-Haddad, Kerstin ; Nelson, Louisa ; Spierings, Diana ; McGrail, Joanne C ; Cam, Maggie ; Nussenzweig, André ; Foijer, Floris ; Ried, Thomas ; Taylor, Stephen S
Publisher:England: The Company of Biologists Ltd
Journal title:Disease models & mechanisms, 2021-11, Vol.14 (11)
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Centrosome amplification primes for apoptosis and favors the response to chemotherapy in ovarian cancer beyond multipolar divisions
Author / Creator:Edwards, Frances ; Fantozzi, Giulia ; Morretton, Jean-Philippe ; Herbette, Aurelie ; Tijhuis, Andréa ; Wardenaar, René ; Foulane, Stacy ; Gemble, Simon ; Spierings, Diana C.J. ; Foijer, Floris ; Mariani, Odette ; Vincent-Salomon, Anne ; Roman, Sergio Roman ; Sastre-Garau, Xavier ; Goundiam, Oumou ; Basto, Renata
Publisher:Nature Publishing Group
Journal title:Nature communications, 2023-08, Vol.14 (1)
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Mapping the Epigenetic Basis of Complex Traits

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A living biobank of ovarian cancer ex vivo models reveals profound mitotic heterogeneity

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cGAS–STING drives the IL-6-dependent survival of chromosomally instable cancers

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Rate, spectrum, and evolutionary dynamics of spontaneous epimutations

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Methylome evolution in plants

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Genetic instability from a single S phase after whole-genome duplication

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Short-term molecular consequences of chromosome mis-segregation for genome stability

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Aneuploidy renders cancer cells vulnerable to mitotic checkpoint inhibition

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Replication stress generates distinctive landscapes of DNA copy number alterations and chromosome scale losses

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Parental DNA Methylation States Are Associated with Heterosis in Epigenetic Hybrids

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Epigenetic Basis of Morphological Variation and Phenotypic Plasticity in Arabidopsis thaliana

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Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation

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Neoadjuvant immune checkpoint blockade in women with mismatch repair deficient endometrial cancer: a phase I study

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Neurodegeneration-associated protein VAPB regulates proliferation in medulloblastoma

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METHimpute: imputation-guided construction of complete methylomes from WGBS data

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Genome-wide epigenetic perturbation jump-starts patterns of heritable variation found in nature

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Replication catastrophe is responsible for intrinsic PAR glycohydrolase inhibitor-sensitivity in patient-derived ovarian cancer models

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IFNγ protects motor neurons from oxidative stress via enhanced global protein synthesis in FUS‐associated amyotrophic lateral sclerosis

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TP53 loss initiates chromosomal instability in fallopian tube epithelial cells

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Centrosome amplification primes for apoptosis and favors the response to chemotherapy in ovarian cancer beyond multipolar divisions

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