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67 results for Wilkinson,+Eduan

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Sixteen novel lineages of SARS-CoV-2 in South Africa
Author / Creator:Tegally, Houriiyah ; Wilkinson, Eduan ; Lessells, Richard J. ; Giandhari, Jennifer ; Pillay, Sureshnee ; Msomi, Nokukhanya ; Mlisana, Koleka ; Bhiman, Jinal N. ; von Gottberg, Anne ; Walaza, Sibongile ; Fonseca, Vagner ; Allam, Mushal ; Ismail, Arshad ; Glass, Allison J. ; Engelbrecht, Susan ; Van Zyl, Gert ; Preiser, Wolfgang ; Williamson, Carolyn ; Petruccione, Francesco ; Sigal, Alex ; Gazy, Inbal ; Hardie, Diana ; Hsiao, Nei-yuan ; Martin, Darren ; York, Denis ; Goedhals, Dominique ; San, Emmanuel James ; Giovanetti, Marta ; Lourenço, José ; Alcantara, Luiz Carlos Junior ; de Oliveira, Tulio
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2021-03, Vol.27 (3), p.440-446
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Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq
Author / Creator:Tshiabuila, Derek ; Giandhari, Jennifer ; Pillay, Sureshnee ; Ramphal, Upasana ; Ramphal, Yajna ; Maharaj, Arisha ; Anyaneji, Ugochukwu Jacob ; Naidoo, Yeshnee ; Tegally, Houriiyah ; San, Emmanuel James ; Wilkinson, Eduan ; Lessells, Richard J. ; de Oliveira, Tulio
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2022-04, Vol.23 (1), p.319-17, Article 319
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Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing
Author / Creator:Pillay, Sureshnee ; San, James Emmanuel ; Tshiabuila, Derek ; Naidoo, Yeshnee ; Pillay, Yusasha ; Maharaj, Akhil ; Anyaneji, Ugochukwu J. ; Wilkinson, Eduan ; Tegally, Houriiyah ; Lessells, Richard J. ; Baxter, Cheryl ; de Oliveira, Tulio ; Giandhari, Jennifer
Publisher:United States: Public Library of Science
Journal title:PloS one, 2023-04, Vol.18 (4), p.e0283219-e0283219
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Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage
Author / Creator:Scheepers, Cathrine ; Everatt, Josie ; Amoako, Daniel G. ; Tegally, Houriiyah ; Wibmer, Constantinos Kurt ; Mnguni, Anele ; Ismail, Arshad ; Mahlangu, Boitshoko ; Lambson, Bronwen E. ; Martin, Darren P. ; Wilkinson, Eduan ; San, James Emmanuel ; Giandhari, Jennifer ; Manamela, Nelia ; Ntuli, Noxolo ; Kgagudi, Prudence ; Cele, Sandile ; Richardson, Simone I. ; Pillay, Sureshnee ; Mohale, Thabo ; Ramphal, Upasana ; Naidoo, Yeshnee ; Khumalo, Zamantungwa T. ; Kwatra, Gaurav ; Gray, Glenda ; Bekker, Linda-Gail ; Madhi, Shabir A. ; Baillie, Vicky ; Van Voorhis, Wesley C. ; Treurnicht, Florette K. ; Venter, Marietjie ; Mlisana, Koleka ; Wolter, Nicole ; Sigal, Alex ; Williamson, Carolyn ; Hsiao, Nei-yuan ; Msomi, Nokukhanya ; Maponga, Tongai ; Preiser, Wolfgang ; Makatini, Zinhle ; Lessells, Richard ; Moore, Penny L. ; de Oliveira, Tulio ; von Gottberg, Anne ; Bhiman, Jinal N.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-04, Vol.13 (1), p.1976-1976, Article 1976
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Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021
Author / Creator:Bbosa, Nicholas ; Ssemwanga, Deogratius ; Namagembe, Hamidah ; Kiiza, Ronald ; Kiconco, Jocelyn ; Kayiwa, John ; Lutalo, Tom ; Lutwama, Julius ; Ssekagiri, Alfred ; Ssewanyana, Isaac ; Nabadda, Susan ; Kyobe-Bbosa, Henry ; Giandhari, Jennifer ; Pillay, Sureshnee ; Ramphal, Upasana ; Ramphal, Yajna ; Naidoo, Yeshnee ; Tshiabuila, Derek ; Tegally, Houriiyah ; San, Emmanuel J. ; Wilkinson, Eduan ; de Oliveira, Tulio ; Kaleebu, Pontiano
Publisher:United States: U.S. National Center for Infectious Diseases
Journal title:Emerging infectious diseases, 2022-05, Vol.28 (5), p.1021-1025
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Multiple Early Introductions of SARS-CoV-2 to Cape Town, South Africa
Author / Creator:Engelbrecht, Susan ; Delaney, Kayla ; Kleinhans, Bronwyn ; Wilkinson, Eduan ; Tegally, Houriiyah ; Stander, Tania ; van Zyl, Gert ; Preiser, Wolfgang ; de Oliveira, Tulio
Publisher:Switzerland: MDPI
Journal title:Viruses, 2021-03, Vol.13 (3), p.526
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Genome-Wide Association Study of HIV Whole Genome Sequences Validated using Drug Resistance
Author / Creator:Power, Robert A. ; Davaniah, Siva ; Derache, Anne ; Wilkinson, Eduan ; Tanser, Frank ; Gupta, Ravindra K. ; Pillay, Deenan ; de Oliveira, Tulio
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-09, Vol.11 (9), p.e0163746-e0163746
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Genomic Characterization of Circulating Dengue Virus, Ethiopia, 2022–2023
Author / Creator:Abera, Adugna ; Tegally, Houriiyah ; Tasew, Geremew ; Wilkinson, Eduan ; Ali, Abraham ; Regasa, Feyisa ; Bitew, Molalegne ; Belachew, Mahlet ; Chabuka, Lucious ; Mwanyika, Gaspary ; Tshiabuila, Derek ; Giandhari, Jennifer ; Pillay, Sureshnee ; Poogavanan, Jenicca ; Moir, Monika ; Kraemer, Moritz U.G. ; Khan, Kamran ; Huber, Carmen ; Tollera, Getachew ; de Wit, Tobias F. Rinke ; Baxter, Cheryl ; Lessells, Richard ; Wolday, Dawit ; Beyene, Dereje ; de Oliveira, Tulio
Publisher:United States: U.S. National Center for Infectious Diseases
Journal title:Emerging infectious diseases, 2025-03, Vol.31 (3), p.516-525
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The effect of interventions on the transmission and spread of HIV in South Africa: a phylodynamic analysis
Author / Creator:Wilkinson, Eduan ; Junqueira, Dennis Maletich ; Lessells, Richard ; Engelbrecht, Susan ; van Zyl, Gert ; de Oliveira, Tulio ; Salemi, Marco
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-02, Vol.9 (1), p.2640-2640, Article 2640
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Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic
Author / Creator:Pillay, Sureshnee ; Giandhari, Jennifer ; Tegally, Houriiyah ; Wilkinson, Eduan ; Chimukangara, Benjamin ; Lessells, Richard ; Moosa, Yunus ; Mattison, Stacey ; Gazy, Inbal ; Fish, Maryam ; Singh, Lavanya ; Khanyile, Khulekani Sedwell ; San, James Emmanuel ; Fonseca, Vagner ; Giovanetti, Marta ; Alcantara, Luiz Carlos ; de Oliveira, Tulio
Publisher:Switzerland: MDPI AG
Journal title:Genes, 2020-08, Vol.11 (8), p.949
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SARS-CoV-2 spike protein diversity at an intra-host level, among SARS-CoV-2 infected individuals in South Africa, 2020 to 2022
Author / Creator:Subramoney, Kathleen ; Mtileni, Nkhensani ; Davis, Ashlyn ; Giandhari, Jennifer ; Tegally, Houriiyah ; Wilkinson, Eduan ; Naidoo, Yeshnee ; Ramphal, Yajna ; Pillay, Sureshnee ; Ramphal, Upasana ; Simane, Andiswa ; Reddy, Bhaveshan ; Mashishi, Bonolo ; Mbenenge, Nonhlanhla ; de Oliveira, Tulio ; Fielding, Burtram C. ; Treurnicht, Florette K.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2023-05, Vol.18 (5), p.e0286373-e0286373
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Detection of Transmission Clusters of HIV-1 Subtype C over a 21-Year Period in Cape Town, South Africa
Author / Creator:Wilkinson, Eduan ; Engelbrecht, Susan ; de Oliveira, Tulio
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-10, Vol.9 (10), p.e109296-e109296
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HIV-1 pretreatment and acquired antiretroviral drug resistance before tenofovir/ lamivudine /dolutegravir (TLD) roll-out in Mozambique
Author / Creator:Ismael, Nália ; Gemusse, Hernane ; Mahumane, Isabel ; Laurindo, Osvaldo ; Magul, Cacildo ; Baxter, Cheryl ; Wilkinson, Eduan ; Hofstra, L. Marije ; Wagar, Nick ; Bila, Dulce ; Mabunda, Nédio ; da Silva, Juliana ; Oliveira, Túlio de ; Raizes, Elliot ; Preiser, Wolfgang ; Manuel, Pedro ; Ramos, Artur ; Vúbil, Adolfo
Publisher:England: BioMed Central Ltd
Journal title:BMC infectious diseases, 2024-07, Vol.24 (1), p.748-9, Article 748
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Molecular Epidemiology and Trends in HIV-1 Transmitted Drug Resistance in Mozambique 1999–2018
Author / Creator:Ismael, Nalia ; Wilkinson, Eduan ; Mahumane, Isabel ; Gemusse, Hernane ; Giandhari, Jennifer ; Bauhofer, Adilson ; Vubil, Adolfo ; Mambo, Pirolita ; Singh, Lavanya ; Mabunda, Nédio ; Bila, Dulce ; Engelbrecht, Susan ; Gudo, Eduardo ; Lessells, Richard ; de Oliveira, Túlio
Publisher:Basel: MDPI AG
Journal title:Viruses, 2022-09, Vol.14 (9), p.1992
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Persistent Hepatitis B Viraemia with Polymerase Mutations among HIV/HBV Co-Infected Patients on HBV-Active ART in KwaZulu-Natal, South Africa
Author / Creator:Msomi, Nokukhanya ; Parboosing, Raveen ; Wilkinson, Eduan ; Giandhari, Jennifer ; Govender, Kerusha ; Chimukangara, Benjamin ; Mlisana, Koleka P.
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2022-04, Vol.14 (4), p.788
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Managing and assembling population-scale data streams, tools and workflows to plan for future pandemics within the INFORM-Africa Consortium
Author / Creator:Poongavanan, Jenicca ; Xavier, Joicymara ; Dunaiski, Marcel ; Tegally, Houriiyah ; Oladejo, Sunday O. ; Ayorinde, Olawole ; Wilkinson, Eduan ; De Oliveira, Tulio
Publisher:South Africa: Academy of Science for South Africa (ASSAf)
Journal title:South African journal of science, 2023-05, Vol.119 (5-6), p.13-16
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SARS-CoV-2 shifting transmission dynamics and hidden reservoirs potentially limit efficacy of public health interventions in Italy
Author / Creator:Giovanetti, Marta ; Cella, Eleonora ; Benedetti, Francesca ; Rife Magalis, Brittany ; Fonseca, Vagner ; Fabris, Silvia ; Campisi, Giovanni ; Ciccozzi, Alessandra ; Angeletti, Silvia ; Borsetti, Alessandra ; Tambone, Vittoradolfo ; Sagnelli, Caterina ; Pascarella, Stefano ; Riva, Alberto ; Ceccarelli, Giancarlo ; Marcello, Alessandro ; Azarian, Taj ; Wilkinson, Eduan ; de Oliveira, Tulio ; Alcantara, Luiz Carlos Junior ; Cauda, Roberto ; Caruso, Arnaldo ; Dean, Natalie E. ; Browne, Cameron ; Lourenco, Jose ; Salemi, Marco ; Zella, Davide ; Ciccozzi, Massimo
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2021-04, Vol.4 (1), p.489-9, Article 489
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Molecular Epidemiology of SARS-CoV-2 during Five COVID-19 Waves and the Significance of Low-Frequency Lineages
Author / Creator:Subramoney, Kathleen ; Mtileni, Nkhensani ; Giandhari, Jennifer ; Naidoo, Yeshnee ; Ramphal, Yajna ; Pillay, Sureshnee ; Ramphal, Upasana ; Maharaj, Akhil ; Tshiabuila, Derek ; Tegally, Houriiyah ; Wilkinson, Eduan ; de Oliveira, Tulio ; Fielding, Burtram C. ; Treurnicht, Florette K.
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2023-05, Vol.15 (5), p.1194
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Peer-mediated HIV assisted partner services to identify and link to care HIV-positive and HCV-positive people who inject drugs: a cohort study protocol
Author / Creator:Monroe-Wise, Aliza ; Mbogo, Loice ; Guthrie, Brandon ; Bukusi, David ; Sambai, Betsy ; Chohan, Bhavna ; Scott, John ; Cherutich, Peter ; Musyoki, Helgar ; Bosire, Rose ; Dunbar, Matthew ; Macharia, Paul ; Masyuko, Sarah ; Wilkinson, Eduan ; De Oliveira, Tulio ; Ludwig-Barron, Natasha ; Sinkele, Bill ; Herbeck, Joshua ; Farquhar, Carey
Publisher:England: British Medical Journal Publishing Group
Journal title:BMJ open, 2021-04, Vol.11 (4), p.e041083-e041083
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Correction: Subramoney et al. Molecular Epidemiology of SARS-CoV-2 during Five COVID-19 Waves and the Significance of Low-Frequency Lineages. Viruses 2023, 15, 1194
Author / Creator:Subramoney, Kathleen ; Mtileni, Nkhensani ; Giandhari, Jennifer ; Naidoo, Yeshnee ; Ramphal, Yajna ; Pillay, Sureshnee ; Ramphal, Upasana ; Maharaj, Akhil ; Tshiabuila, Derek ; Tegally, Houriiyah ; Wilkinson, Eduan ; Oliveira, Tulio de ; Fielding, Burtram C. ; Treurnicht, Florette K.
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2023-07, Vol.15 (7), p.1502
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Sixteen novel lineages of SARS-CoV-2 in South Africa

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Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq

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Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing

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Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage

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Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021

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Multiple Early Introductions of SARS-CoV-2 to Cape Town, South Africa

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Genome-Wide Association Study of HIV Whole Genome Sequences Validated using Drug Resistance

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Genomic Characterization of Circulating Dengue Virus, Ethiopia, 2022–2023

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The effect of interventions on the transmission and spread of HIV in South Africa: a phylodynamic analysis

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Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic

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SARS-CoV-2 spike protein diversity at an intra-host level, among SARS-CoV-2 infected individuals in South Africa, 2020 to 2022

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Detection of Transmission Clusters of HIV-1 Subtype C over a 21-Year Period in Cape Town, South Africa

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HIV-1 pretreatment and acquired antiretroviral drug resistance before tenofovir/ lamivudine /dolutegravir (TLD) roll-out in Mozambique

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Molecular Epidemiology and Trends in HIV-1 Transmitted Drug Resistance in Mozambique 1999–2018

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Persistent Hepatitis B Viraemia with Polymerase Mutations among HIV/HBV Co-Infected Patients on HBV-Active ART in KwaZulu-Natal, South Africa

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Managing and assembling population-scale data streams, tools and workflows to plan for future pandemics within the INFORM-Africa Consortium

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SARS-CoV-2 shifting transmission dynamics and hidden reservoirs potentially limit efficacy of public health interventions in Italy

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Molecular Epidemiology of SARS-CoV-2 during Five COVID-19 Waves and the Significance of Low-Frequency Lineages

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Peer-mediated HIV assisted partner services to identify and link to care HIV-positive and HCV-positive people who inject drugs: a cohort study protocol

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Correction: Subramoney et al. Molecular Epidemiology of SARS-CoV-2 during Five COVID-19 Waves and the Significance of Low-Frequency Lineages. Viruses 2023, 15, 1194

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