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Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria
Author / Creator:Yahara, Koji ; Suzuki, Masato ; Hirabayashi, Aki ; Suda, Wataru ; Hattori, Masahira ; Suzuki, Yutaka ; Okazaki, Yusuke
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-01, Vol.12 (1), p.27-12, Article 27
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Genome evolution and the emergence of pathogenicity in avian Escherichia coli
Author / Creator:Mageiros, Leonardos ; Méric, Guillaume ; Bayliss, Sion C. ; Pensar, Johan ; Pascoe, Ben ; Mourkas, Evangelos ; Calland, Jessica K. ; Yahara, Koji ; Murray, Susan ; Wilkinson, Thomas S. ; Williams, Lisa K. ; Hitchings, Matthew D. ; Porter, Jonathan ; Kemmett, Kirsty ; Feil, Edward J. ; Jolley, Keith A. ; Williams, Nicola J. ; Corander, Jukka ; Sheppard, Samuel K.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-02, Vol.12 (1), p.765-13, Article 765
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Identification of Epigenetic Biomarkers of Lung Adenocarcinoma through Multi-Omics Data Analysis
Author / Creator:Kikutake, Chie ; Yahara, Koji
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-04, Vol.11 (4), p.e0152918-e0152918
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Geographical distribution of Enterobacterales with a carbapenemase IMP-6 phenotype and its association with antimicrobial use: An analysis using comprehensive national surveillance data on antimicrobi...
Author / Creator:Hirabayashi, Aki ; Yahara, Koji ; Kajihara, Toshiki ; Sugai, Motoyuki ; Shibayama, Keigo
Publisher:United States: Public Library of Science
Journal title:PloS one, 2020-12, Vol.15 (12), p.e0243630-e0243630
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Association between the proportion of laparoscopic approaches for digestive surgeries and the incidence of consequent surgical site infections, 2009–2019: A retrospective observational study based on...
Author / Creator:Kajihara, Toshiki ; Yahara, Koji ; Hirabayashi, Aki ; Hosaka, Yumiko ; Kitamura, Norikazu ; Sugai, Motoyuki ; Shibayama, Keigo
Publisher:United States: Public Library of Science
Journal title:PloS one, 2023-02, Vol.18 (2), p.e0281838-e0281838
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National genomic surveillance integrating standardized quantitative susceptibility testing clarifies antimicrobial resistance in Enterobacterales
Author / Creator:Kayama, Shizuo ; Yahara, Koji ; Sugawara, Yo ; Kawakami, Sayoko ; Kondo, Kohei ; Zuo, Hui ; Kutsuno, Shoko ; Kitamura, Norikazu ; Hirabayashi, Aki ; Kajihara, Toshiki ; Kurosu, Hitomi ; Yu, Liansheng ; Suzuki, Masato ; Hisatsune, Junzo ; Sugai, Motoyuki
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-12, Vol.14 (1), p.8046-8046, Article 8046
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Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis
Author / Creator:Méric, Guillaume ; Mageiros, Leonardos ; Pensar, Johan ; Laabei, Maisem ; Yahara, Koji ; Pascoe, Ben ; Kittiwan, Nattinee ; Tadee, Phacharaporn ; Post, Virginia ; Lamble, Sarah ; Bowden, Rory ; Bray, James E. ; Morgenstern, Mario ; Jolley, Keith A. ; Maiden, Martin C. J. ; Feil, Edward J. ; Didelot, Xavier ; Miragaia, Maria ; de Lencastre, Herminia ; Moriarty, T. Fintan ; Rohde, Holger ; Massey, Ruth ; Mack, Dietrich ; Corander, Jukka ; Sheppard, Samuel K.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-11, Vol.9 (1), p.5034-11, Article 5034
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Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis
Author / Creator:Yahara, Hiroko ; Yanamoto, Souichi ; Takahashi, Miho ; Hamada, Yuji ; Asaka, Takuya ; Kitagawa, Yoshimasa ; Moridera, Kuniyasu ; Noguchi, Kazuma ; Maruoka, Yutaka ; Yahara, Koji
Publisher:United States: Public Library of Science
Journal title:PloS one, 2024-05, Vol.19 (5), p.e0302569-e0302569
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Prospective Multicenter Surveillance of Non-H. pylori Helicobacter Infections during Medical Checkups, Japan
Author / Creator:Tokunaga, Kengo ; Rimbara, Emiko ; Tsukadaira, Toshihisa ; Mabe, Katsuhiro ; Yahara, Koji ; Suzuki, Hidekazu ; Shimoyama, Tadashi ; Sugimoto, Mitsushige ; Okimoto, Tadayoshi ; Matsui, Hidenori ; Suzuki, Masato ; Shibayama, Keigo ; Ota, Hiroyoshi ; Murakami, Kazunari ; Kato, Mototsugu
Publisher:United States: Centers for Disease Control and Prevention
Journal title:Emerging infectious diseases, 2025-06, Vol.31 (6), p.1121-1130
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Shotgun metagenome sequencing identification of a set of genes encoded by Actinomyces associated with medication-related osteonecrosis of the jaw
Author / Creator:Yahara, Hiroko ; Hiraki, Akimitsu ; Maruoka, Yutaka ; Hirabayashi, Aki ; Suzuki, Masato ; Yahara, Koji
Publisher:United States: Public Library of Science
Journal title:PloS one, 2020-11, Vol.15 (11), p.e0241676-e0241676
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Host ecology regulates interspecies recombination in bacteria of the genus Campylobacter
Author / Creator:Mourkas, Evangelos ; Yahara, Koji ; Bayliss, Sion C ; Calland, Jessica K ; Johansson, Håkan ; Mageiros, Leonardos ; Muñoz-Ramirez, Zilia Y ; Futcher, Grant ; Méric, Guillaume ; Hitchings, Matthew D ; Sandoval-Motta, Santiago ; Torres, Javier ; Jolley, Keith A ; Maiden, Martin CJ ; Ellström, Patrik ; Waldenström, Jonas ; Pascoe, Ben ; Sheppard, Samuel K
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2022-02, Vol.11
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Author Correction: National genomic surveillance integrating standardized quantitative susceptibility testing clarifies antimicrobial resistance in Enterobacterales
Author / Creator:Kayama, Shizuo ; Yahara, Koji ; Sugawara, Yo ; Kawakami, Sayoko ; Kondo, Kohei ; Zuo, Hui ; Kutsuno, Shoko ; Kitamura, Norikazu ; Hirabayashi, Aki ; Kajihara, Toshiki ; Kurosu, Hitomi ; Yu, Liansheng ; Suzuki, Masato ; Hisatsune, Junzo ; Sugai, Motoyuki
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-01, Vol.15 (1), p.782-782, Article 782
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Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas
Author / Creator:Thorell, Kaisa ; Yahara, Koji ; Berthenet, Elvire ; Lawson, Daniel J. ; Mikhail, Jane ; Kato, Ikuko ; Mendez, Alfonso ; Rizzato, Cosmeri ; Bravo, María Mercedes ; Suzuki, Rumiko ; Yamaoka, Yoshio ; Torres, Javier ; Sheppard, Samuel K. ; Falush, Daniel
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2017-02, Vol.13 (2), p.e1006546
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Comparison of de-duplication methods used by WHO Global Antimicrobial Resistance Surveillance System (GLASS) and Japan Nosocomial Infections Surveillance (JANIS) in the surveillance of antimicrobial r...
Author / Creator:Kajihara, Toshiki ; Yahara, Koji ; Stelling, John ; Eremin, Sergey Romualdovich ; Tornimbene, Barbara ; Thamlikitkul, Visanu ; Hirabayashi, Aki ; Anzai, Eiko ; Wakai, Satoyo ; Matsunaga, Nobuaki ; Hayakawa, Kayoko ; Ohmagari, Norio ; Sugai, Motoyuki ; Shibayama, Keigo
Publisher:San Francisco: Public Library of Science
Journal title:PloS one, 2020-06, Vol.15 (6), p.e0228234-e0228234
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A Reference Pan-Genome Approach to Comparative Bacterial Genomics: Identification of Novel Epidemiological Markers in Pathogenic Campylobacter
Author / Creator:Méric, Guillaume ; Yahara, Koji ; Mageiros, Leonardos ; Pascoe, Ben ; Maiden, Martin C. J. ; Jolley, Keith A. ; Sheppard, Samuel K.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-03, Vol.9 (3), p.e92798-e92798
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Chromosome Painting In Silico in a Bacterial Species Reveals Fine Population Structure
Author / Creator:Yahara, Koji ; Furuta, Yoshikazu ; Oshima, Kenshiro ; Yoshida, Masaru ; Azuma, Takeshi ; Hattori, Masahira ; Uchiyama, Ikuo ; Kobayashi, Ichizo
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2013-06, Vol.30 (6), p.1454-1464
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Plasmid analysis of NDM metallo-β-lactamase-producing Enterobacterales isolated in Vietnam
Author / Creator:Hirabayashi, Aki ; Yahara, Koji ; Mitsuhashi, Satomi ; Nakagawa, So ; Imanishi, Tadashi ; Ha, Van Thi Thu ; Nguyen, An Van ; Nguyen, Son Thai ; Shibayama, Keigo ; Suzuki, Masato
Publisher:United States: Public Library of Science
Journal title:PloS one, 2021-07, Vol.16 (7), p.e0231119
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Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence
Author / Creator:Smet, Annemieke ; Yahara, Koji ; Rossi, Mirko ; Tay, Alfred ; Backert, Steffen ; Armin, Ensser ; Fox, James G. ; Flahou, Bram ; Ducatelle, Richard ; Haesebrouck, Freddy ; Corander, Jukka
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2018-10, Vol.12 (10), p.2518-2531
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Improved penicillin susceptibility of Streptococcus pneumoniae and increased penicillin consumption in Japan, 2013–18
Author / Creator:Tsuzuki, Shinya ; Akiyama, Takayuki ; Matsunaga, Nobuaki ; Yahara, Koji ; Shibayama, Keigo ; Sugai, Motoyuki ; Ohmagari, Norio
Publisher:United States: Public Library of Science
Journal title:PloS one, 2020-10, Vol.15 (10), p.e0240655-e0240655
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Antibiotic Treatment Regimes as a Driver of the Global Population Dynamics of a Major Gonorrhea Lineage
Author / Creator:Osnes, Magnus N ; Dorp, Lucy van ; Brynildsrud, Ola B ; Alfsnes, Kristian ; Schneiders, Thamarai ; Templeton, Kate E ; Yahara, Koji ; Balloux, Francois ; Caugant, Dominique A ; Eldholm, Vegard
Publisher:United States: Oxford University Press
Journal title:Molecular biology and evolution, 2021-04, Vol.38 (4), p.1249-1261
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Showing 1 to 20 of 74 results

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Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria

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Genome evolution and the emergence of pathogenicity in avian Escherichia coli

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Identification of Epigenetic Biomarkers of Lung Adenocarcinoma through Multi-Omics Data Analysis

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Geographical distribution of Enterobacterales with a carbapenemase IMP-6 phenotype and its association with antimicrobial use: An analysis using comprehensive national surveillance data on antimicrobi...

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Association between the proportion of laparoscopic approaches for digestive surgeries and the incidence of consequent surgical site infections, 2009–2019: A retrospective observational study based on...

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National genomic surveillance integrating standardized quantitative susceptibility testing clarifies antimicrobial resistance in Enterobacterales

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Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

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Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis

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Prospective Multicenter Surveillance of Non-H. pylori Helicobacter Infections during Medical Checkups, Japan

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Shotgun metagenome sequencing identification of a set of genes encoded by Actinomyces associated with medication-related osteonecrosis of the jaw

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Host ecology regulates interspecies recombination in bacteria of the genus Campylobacter

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Author Correction: National genomic surveillance integrating standardized quantitative susceptibility testing clarifies antimicrobial resistance in Enterobacterales

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Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas

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Comparison of de-duplication methods used by WHO Global Antimicrobial Resistance Surveillance System (GLASS) and Japan Nosocomial Infections Surveillance (JANIS) in the surveillance of antimicrobial r...

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A Reference Pan-Genome Approach to Comparative Bacterial Genomics: Identification of Novel Epidemiological Markers in Pathogenic Campylobacter

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Chromosome Painting In Silico in a Bacterial Species Reveals Fine Population Structure

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Plasmid analysis of NDM metallo-β-lactamase-producing Enterobacterales isolated in Vietnam

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Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence

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Improved penicillin susceptibility of Streptococcus pneumoniae and increased penicillin consumption in Japan, 2013–18

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Antibiotic Treatment Regimes as a Driver of the Global Population Dynamics of a Major Gonorrhea Lineage

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