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ArticlesPeer ReviewedFull Text
Ferroptosis occurs through an osmotic mechanism and propagates independently of cell rupture
Author / Creator:Riegman, Michelle ; Sagie, Liran ; Galed, Chen ; Levin, Tom ; Steinberg, Noah ; Dixon, Scott J. ; Wiesner, Ulrich ; Bradbury, Michelle S. ; Niethammer, Philipp ; Zaritsky, Assaf ; Overholtzer, Michael
Publisher:London: Nature Publishing Group UK
Journal title:Nature cell biology, 2020-09, Vol.22 (9), p.1042-1048
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Machine learning inference of continuous single-cell state transitions during myoblast differentiation and fusion
Author / Creator:Shakarchy, Amit ; Zarfati, Giulia ; Hazak, Adi ; Mealem, Reut ; Huk, Karina ; Ziv, Tamar ; Avinoam, Ori ; Zaritsky, Assaf
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2024-03, Vol.20 (3), p.217-241
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Visual interpretability of image-based classification models by generative latent space disentanglement applied to in vitro fertilization
Author / Creator:Rotem, Oded ; Schwartz, Tamar ; Maor, Ron ; Tauber, Yishay ; Shapiro, Maya Tsarfati ; Meseguer, Marcos ; Gilboa, Daniella ; Seidman, Daniel S. ; Zaritsky, Assaf
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-08, Vol.15 (1), p.7390-19, Article 7390
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Quantitative Live Imaging of Human Embryonic Stem Cell Derived Neural Rosettes Reveals Structure-Function Dynamics Coupled to Cortical Development
Author / Creator:Ziv, Omer ; Zaritsky, Assaf ; Yaffe, Yakey ; Mutukula, Naresh ; Edri, Reuven ; Elkabetz, Yechiel
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2015-10, Vol.11 (10), p.e1004453-e1004453
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Propagating waves of directionality and coordination orchestrate collective cell migration
Author / Creator:Zaritsky, Assaf ; Kaplan, Doron ; Hecht, Inbal ; Natan, Sari ; Wolf, Lior ; Gov, Nir S ; Ben-Jacob, Eshel ; Tsarfaty, Ilan
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2014-07, Vol.10 (7), p.e1003747-e1003747
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Using Unlabeled Information of Embryo Siblings from the Same Cohort Cycle to Enhance In Vitro Fertilization Implantation Prediction
Author / Creator:Tzukerman, Noam ; Rotem, Oded ; Shapiro, Maya Tsarfati ; Maor, Ron ; Meseguer, Marcos ; Gilboa, Daniella ; Seidman, Daniel S ; Zaritsky, Assaf
Publisher:Germany: John Wiley & Sons, Inc
Journal title:Advanced science, 2023-09, Vol.10 (27), p.e2207711-e2207711
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Emergence of HGF/SF-induced coordinated cellular motility
Author / Creator:Zaritsky, Assaf ; Natan, Sari ; Ben-Jacob, Eshel ; Tsarfaty, Ilan
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-09, Vol.7 (9), p.e44671-e44671
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Decoupling global biases and local interactions between cell biological variables
Author / Creator:Zaritsky, Assaf ; Obolski, Uri ; Gan, Zhuo ; Reis, Carlos R ; Kadlecova, Zuzana ; Du, Yi ; Schmid, Sandra L ; Danuser, Gaudenz
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2017-03, Vol.6
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Decoupling Implantation Prediction and Embryo Ranking in Machine Learning: The Impact of Clinical Data and Discarded Embryos
Author / Creator:Erlich, Itay ; Saravelos, Sotirios H. ; Hickman, Cristina ; Ben‐Meir, Assaf ; Har‐Vardi, Iris ; Grifo, James A. ; Kahraman, Semra ; Zaritsky, Assaf
Publisher:Weinheim: John Wiley & Sons, Inc
Journal title:Advanced intelligent systems, 2024-12, Vol.6 (12), p.n/a
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Inference of long-range cell-cell force transmission from ECM remodeling fluctuations
Author / Creator:Nahum, Assaf ; Koren, Yoni ; Ergaz, Bar ; Natan, Sari ; Miller, Gad ; Tamir, Yuval ; Goren, Shahar ; Kolel, Avraham ; Jagadeeshan, Sankar ; Elkabets, Moshe ; Lesman, Ayelet ; Zaritsky, Assaf
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2023-08, Vol.6 (1), p.811-18, Article 811
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Cell motility dynamics: a novel segmentation algorithm to quantify multi-cellular bright field microscopy images
Author / Creator:Zaritsky, Assaf ; Natan, Sari ; Horev, Judith ; Hecht, Inbal ; Wolf, Lior ; Ben-Jacob, Eshel ; Tsarfaty, Ilan
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-11, Vol.6 (11), p.e27593-e27593
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Differential dynamics of early stages of platelet adhesion and spreading on collagen IV- and fibrinogen-coated surfaces [version 2; peer review: 3 approved]
Author / Creator:Horev, Melanie B ; Zabary, Yishaia ; Zarka, Revital ; Sorrentino, Simona ; Medalia, Ohad ; Zaritsky, Assaf ; Geiger, Benjamin
Publisher:London: Faculty of 1000 Ltd
Journal title:F1000 research, 2020-01, Vol.9, p.449
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Preprint Highlight: 7-UP: generating in silico CODEX from a small set of immunofluorescence markers
Author / Creator:Zaritsky, Assaf
Journal title:Molecular biology of the cell, 2023-05, Vol.34 (5)
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Preprint Highlight: Learning orientation-invariant representations enables accurate and robust morphologic profiling of cells and organelles
Author / Creator:Zaritsky, Assaf
Journal title:Molecular biology of the cell, 2023-05, Vol.34 (5)
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Preprint Highlight: Event-driven acquisition for content-enriched microscopy
Author / Creator:Zaritsky, Assaf
Journal title:Molecular biology of the cell, 2022-10, Vol.33 (12)
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Preprint Highlight: Virtual screening for small molecule pathway regulators by image profile matching
Author / Creator:Zaritsky, Assaf
Journal title:Molecular biology of the cell, 2022-10, Vol.33 (12)
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Preprint Highlight: Automatic detection of spatiotemporal signaling patterns in cell collectives
Author / Creator:Zaritsky, Assaf
Journal title:Molecular biology of the cell, 2022-10, Vol.33 (12)
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Preprint Highlight: Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks
Author / Creator:Zaritsky, Assaf
Journal title:Molecular biology of the cell, 2022-09, Vol.33 (10)
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Preprint Highlight: Self‐supervised deep learning encodes high-resolution features of protein subcellular localization
Author / Creator:Zaritsky, Assaf
Journal title:Molecular biology of the cell, 2022-08, Vol.33 (9)
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ArticlesPeer ReviewedFull Text
Differential dynamics of early stages of platelet adhesion and spreading on collagen IV- and fibrinogen-coated surfaces [version 1; peer review: 3 approved]
Author / Creator:Horev, Melanie B ; Zabary, Yishaia ; Zarka, Revital ; Sorrentino, Simona ; Medalia, Ohad ; Zaritsky, Assaf ; Geiger, Benjamin
Publisher:England: F1000 Research Ltd
Journal title:F1000 research, 2020, Vol.9, p.449
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Ferroptosis occurs through an osmotic mechanism and propagates independently of cell rupture

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Machine learning inference of continuous single-cell state transitions during myoblast differentiation and fusion

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Visual interpretability of image-based classification models by generative latent space disentanglement applied to in vitro fertilization

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Quantitative Live Imaging of Human Embryonic Stem Cell Derived Neural Rosettes Reveals Structure-Function Dynamics Coupled to Cortical Development

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Propagating waves of directionality and coordination orchestrate collective cell migration

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Using Unlabeled Information of Embryo Siblings from the Same Cohort Cycle to Enhance In Vitro Fertilization Implantation Prediction

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Emergence of HGF/SF-induced coordinated cellular motility

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Decoupling global biases and local interactions between cell biological variables

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Decoupling Implantation Prediction and Embryo Ranking in Machine Learning: The Impact of Clinical Data and Discarded Embryos

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Inference of long-range cell-cell force transmission from ECM remodeling fluctuations

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Cell motility dynamics: a novel segmentation algorithm to quantify multi-cellular bright field microscopy images

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Differential dynamics of early stages of platelet adhesion and spreading on collagen IV- and fibrinogen-coated surfaces [version 2; peer review: 3 approved]

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Preprint Highlight: 7-UP: generating in silico CODEX from a small set of immunofluorescence markers

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Preprint Highlight: Learning orientation-invariant representations enables accurate and robust morphologic profiling of cells and organelles

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Preprint Highlight: Event-driven acquisition for content-enriched microscopy

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Preprint Highlight: Virtual screening for small molecule pathway regulators by image profile matching

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Preprint Highlight: Automatic detection of spatiotemporal signaling patterns in cell collectives

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Preprint Highlight: Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks

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Preprint Highlight: Self‐supervised deep learning encodes high-resolution features of protein subcellular localization

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Differential dynamics of early stages of platelet adhesion and spreading on collagen IV- and fibrinogen-coated surfaces [version 1; peer review: 3 approved]

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