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ArticlesPeer ReviewedFull Text
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
Author / Creator:Bickhart, Derek M. ; Kolmogorov, Mikhail ; Tseng, Elizabeth ; Portik, Daniel M. ; Korobeynikov, Anton ; Tolstoganov, Ivan ; Uritskiy, Gherman ; Liachko, Ivan ; Sullivan, Shawn T. ; Shin, Sung Bong ; Zorea, Alvah ; Andreu, Victòria Pascal ; Panke-Buisse, Kevin ; Medema, Marnix H. ; Mizrahi, Itzhak ; Pevzner, Pavel A. ; Smith, Timothy P. L.
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2022-05, Vol.40 (5), p.711-719
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Plasmids in the human gut reveal neutral dispersal and recombination that is overpowered by inflammatory diseases
Author / Creator:Zorea, Alvah ; Pellow, David ; Levin, Liron ; Pilosof, Shai ; Friedman, Jonathan ; Shamir, Ron ; Mizrahi, Itzhak
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-04, Vol.15 (1), p.3147-13, Article 3147
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ArticlesPeer ReviewedFull Text
SCAPP: an algorithm for improved plasmid assembly in metagenomes
Author / Creator:Pellow, David ; Zorea, Alvah ; Probst, Maraike ; Furman, Ori ; Segal, Arik ; Mizrahi, Itzhak ; Shamir, Ron
Publisher:London: BioMed Central
Journal title:Microbiome, 2021-06, Vol.9 (1), p.1-12, Article 144
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ArticlesPeer ReviewedFull Text
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
Author / Creator:Bickhart, Derek M. ; Kolmogorov, Mikhail ; Tseng, Elizabeth ; Portik, Daniel M. ; Korobeynikov, Anton ; Tolstoganov, Ivan ; Uritskiy, Gherman ; Liachko, Ivan ; Sullivan, Shawn T. ; Shin, Sung Bong ; Zorea, Alvah ; Andreu, Victòria Pascal ; Panke-Buisse, Kevin ; Medema, Marnix H. ; Mizrahi, Itzhak ; Pevzner, Pavel A. ; Smith, Timothy P. L.
Journal title:Nature biotechnology, 2022-01, Vol.40 (5), p.711-719
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ArticlesPeer ReviewedFull Text
Multilayer networks of plasmid genetic similarity reveal potential pathways of gene transmission
Author / Creator:Shapiro, Julie Teresa ; Zorea, Alvah ; Kav, Aya Brown ; Ontiveros, Vicente J. ; Mizrahi, Itzhak ; Pilosof, Shai
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2023-05, Vol.17 (5), p.649-659
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ArticlesPeer ReviewedFull Text
Asgard ESCRT-III and VPS4 reveal conserved chromatin binding properties of the ESCRT machinery
Author / Creator:Nachmias, Dikla ; Melnikov, Nataly ; Zorea, Alvah ; Sharon, Maya ; Yemini, Reut ; De-picchoto, Yasmin ; Tsirkas, Ioannis ; Aharoni, Amir ; Frohn, Bela ; Schwille, Petra ; Zarivach, Raz ; Mizrahi, Itzhak ; Elia, Natalie
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2023-01, Vol.17 (1), p.117-129
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ArticlesPeer ReviewedFull Text
Plasmid-encoded toxin defence mediates mutualistic microbial interactions
Author / Creator:Moraïs, Sarah ; Mazor, Michael ; Tovar-Herrera, Omar ; Zehavi, Tamar ; Zorea, Alvah ; Ifrach, Morya ; Bogumil, David ; Brandis, Alexander ; Walter, Jens ; Elia, Natalie ; Gur, Eyal ; Mizrahi, Itzhak
Publisher:London: Nature Publishing Group UK
Journal title:Nature microbiology, 2024-01, Vol.9 (1), p.108-119
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ArticlesFull Text
Asgard ESCRT-III and VPS4 reveal evolutionary conserved chromatin binding properties of the ESCRT machinery
Author / Creator:Nachmias, Dikla ; Melnikov, Nataly ; Zorea, Alvah ; De-picchoto, Yasmin ; Zarivach, Raz ; Mizrahi, Itzhak ; Elia, Natalie
Publisher:Cold Spring Harbor Laboratory
Journal title:bioRxiv, 2021-11
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ArticlesFull Text
Multilayer Networks of Plasmid Genetic Similarity Reveal Potential Pathways of Gene Transmission
Author / Creator:Shapiro, Julie Teresa ; Zorea, Alvah ; Aya Brown Kav ; Ontiveros, Vicente J ; Mizrahi, Itzak ; Pilosof, Shai
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-09
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ArticlesFull Text
SCAPP: An algorithm for improved plasmid assembly in metagenomes
Author / Creator:Pellow, David ; Zorea, Alvah ; Probst, Maraike ; Furman, Ori ; Segal, Arik ; Mizrahi, Itzik ; Shamir, Ron
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-08
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ArticlesFull Text
Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing
Author / Creator:Bickhart, Derek M. ; Kolmogorov, Mikhail ; Tseng, Elizabeth ; Portik, Daniel M. ; Korobeynikov, Anton ; Tolstoganov, Ivan ; Uritskiy, Gherman ; Liachko, Ivan ; Sullivan, Shawn T. ; Shin, Sung Bong ; Zorea, Alvah ; Andreu, Victòria Pascal ; Panke-Buisse, Kevin ; Medema, Marnix H. ; Mizrahi, Itzik ; Pevzner, Pavel A. ; Smith, Timothy P.L.
Publisher:Cold Spring Harbor Laboratory
Journal title:bioRxiv, 2021-05
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Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities

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Plasmids in the human gut reveal neutral dispersal and recombination that is overpowered by inflammatory diseases

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SCAPP: an algorithm for improved plasmid assembly in metagenomes

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Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities

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Multilayer networks of plasmid genetic similarity reveal potential pathways of gene transmission

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Asgard ESCRT-III and VPS4 reveal conserved chromatin binding properties of the ESCRT machinery

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Plasmid-encoded toxin defence mediates mutualistic microbial interactions

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Asgard ESCRT-III and VPS4 reveal evolutionary conserved chromatin binding properties of the ESCRT machinery

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Multilayer Networks of Plasmid Genetic Similarity Reveal Potential Pathways of Gene Transmission

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SCAPP: An algorithm for improved plasmid assembly in metagenomes

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Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing

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