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138 results for dePamphilis,+Claude+W

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ArticlesPeer ReviewedFull Text
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
Author / Creator:Jin, Jian-Jun ; Yu, Wen-Bin ; Yang, Jun-Bo ; Song, Yu ; dePamphilis, Claude W ; Yi, Ting-Shuang ; Li, De-Zhu
Publisher:England: BioMed Central
Journal title:Genome Biology, 2020-09, Vol.21 (1), p.241-241, Article 241
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MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs
Author / Creator:Shahid, Saima ; Kim, Gunjune ; Johnson, Nathan R. ; Wafula, Eric ; Wang, Feng ; Coruh, Ceyda ; Bernal-Galeano, Vivian ; Phifer, Tamia ; dePamphilis, Claude W. ; Westwood, James H. ; Axtell, Michael J.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2018-01, Vol.553 (7686), p.82-85
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The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
Author / Creator:Wicke, Susann ; Schneeweiss, Gerald M. ; dePamphilis, Claude W. ; Müller, Kai F. ; Quandt, Dietmar
Publisher:Dordrecht: Springer Netherlands
Journal title:Plant molecular biology, 2011-07, Vol.76 (3-5), p.273-297
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Genomic-scale exchange of mRNA between a parasitic plant and its hosts
Author / Creator:Kim, Gunjune ; LeBlanc, Megan L. ; Wafula, Eric K. ; dePamphilis, Claude W. ; Westwood, James H.
Publisher:Washington: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2014-08, Vol.345 (6198), p.808-811
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Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants
Author / Creator:Wicke, Susann ; Müller, Kai F. ; dePamphilis, Claude W. ; Quandt, Dietmar ; Bellot, Sidonie ; Schneeweiss, Gerald M.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2016-08, Vol.113 (32), p.9045-9050
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Local Auxin Biosynthesis Mediated by a YUCCA Flavin Monooxygenase Regulates Haustorium Development in the Parasitic Plant Phtheirospermum japonicum
Author / Creator:Ishida, Juliane K. ; Wakatake, Takanori ; Yoshida, Satoko ; Takebayashi, Yumiko ; Kasahara, Hiroyuki ; Wafula, Eric ; de Pamphilis, Claude W. ; Namba, Shigetou ; Shirasu, Ken
Publisher:United States: American Society of Plant Biologists
Journal title:The Plant cell, 2016-08, Vol.28 (8), p.1795-1814
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Genomics of sorghum local adaptation to a parasitic plant
Author / Creator:Bellis, Emily S. ; Kelly, Elizabeth A. ; Lorts, Claire M. ; Gao, Huirong ; DeLeo, Victoria L. ; Rouhan, Germinal ; Budden, Andrew ; Bhaskara, Govinal B. ; Hu, Zhenbin ; Muscarella, Robert ; Timko, Michael P. ; Nebie, Baloua ; Runo, Steven M. ; Chilcoat, N. Doane ; Juenger, Thomas E. ; Morris, Geoffrey P. ; dePamphilis, Claude W. ; Lasky, Jesse R.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2020-02, Vol.117 (8), p.4243-4251
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RNA viruses in hymenopteran pollinators: evidence of inter-Taxa virus transmission via pollen and potential impact on non-Apis hymenopteran species
Author / Creator:Singh, Rajwinder ; Levitt, Abby L ; Rajotte, Edwin G ; Holmes, Edward C ; Ostiguy, Nancy ; Vanengelsdorp, Dennis ; Lipkin, W Ian ; Depamphilis, Claude W ; Toth, Amy L ; Cox-Foster, Diana L
Publisher:United States: Public Library of Science
Journal title:PloS one, 2010-12, Vol.5 (12), p.e14357
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Single-copy nuclear genes place haustorial Hydnoraceae within piperales and reveal a cretaceous origin of multiple parasitic angiosperm lineages
Author / Creator:Naumann, Julia ; Salomo, Karsten ; Der, Joshua P ; Wafula, Eric K ; Bolin, Jay F ; Maass, Erika ; Frenzke, Lena ; Samain, Marie-Stéphanie ; Neinhuis, Christoph ; dePamphilis, Claude W ; Wanke, Stefan
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-11, Vol.8 (11), p.e79204-e79204
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FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar
Author / Creator:Hsu, Chuan-Yu ; Adams, Joshua P ; Kim, Hyejin ; No, Kyoungok ; Ma, Caiping ; Strauss, Steven H ; Drnevich, Jenny ; Vandervelde, Lindsay ; Ellis, Jeffrey D ; Rice, Brandon M ; Wickett, Norman ; Gunter, Lee E ; Tuskan, Gerald A ; Brunner, Amy M ; Page, Grier P ; Barakat, Abdelali ; Carlson, John E ; dePamphilis, Claude W ; Luthe, Dawn S ; Yuceer, Cetin
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2011-06, Vol.108 (26), p.10756-10761
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Compensatory sequence variation between trans -species small RNAs and their target sites
Author / Creator:Johnson, Nathan R ; dePamphilis, Claude W ; Axtell, Michael J
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2019-12, Vol.8
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Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism
Author / Creator:Misra, Vikram A ; Wafula, Eric K ; Wang, Yu ; dePamphilis, Claude W ; Timko, Michael P
Publisher:England: BioMed Central Ltd
Journal title:BMC plant biology, 2019-05, Vol.19 (1), p.196-196, Article 196
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Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome
Author / Creator:Honaas, Loren A ; Wafula, Eric K ; Wickett, Norman J ; Der, Joshua P ; Zhang, Yeting ; Edger, Patrick P ; Altman, Naomi S ; Pires, J Chris ; Leebens-Mack, James H ; dePamphilis, Claude W
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-01, Vol.11 (1), p.e0146062-e0146062
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Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes
Author / Creator:Johnson, Marc T J ; Carpenter, Eric J ; Tian, Zhijian ; Bruskiewich, Richard ; Burris, Jason N ; Carrigan, Charlotte T ; Chase, Mark W ; Clarke, Neil D ; Covshoff, Sarah ; Depamphilis, Claude W ; Edger, Patrick P ; Goh, Falicia ; Graham, Sean ; Greiner, Stephan ; Hibberd, Julian M ; Jordon-Thaden, Ingrid ; Kutchan, Toni M ; Leebens-Mack, James ; Melkonian, Michael ; Miles, Nicholas ; Myburg, Henrietta ; Patterson, Jordan ; Pires, J Chris ; Ralph, Paula ; Rolf, Megan ; Sage, Rowan F ; Soltis, Douglas ; Soltis, Pamela ; Stevenson, Dennis ; Stewart, Jr, C Neal ; Surek, Barbara ; Thomsen, Christina J M ; Villarreal, Juan Carlos ; Wu, Xiaolei ; Zhang, Yong ; Deyholos, Michael K ; Wong, Gane Ka-Shu
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-11, Vol.7 (11), p.e50226-e50226
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Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
Author / Creator:Jansen, Robert K ; Cai, Zhengqiu ; Raubeson, Linda A ; Daniell, Henry ; dePamphilis, Claude W ; Leebens-Mack, James ; Müller, Kai F ; Guisinger-Bellian, Mary ; Haberle, Rosemarie C ; Hansen, Anne K ; Chumley, Timothy W ; Lee, Seung-Bum ; Peery, Rhiannon ; McNeal, Joel R ; Kuehl, Jennifer V ; Boore, Jeffrey L
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2007-12, Vol.104 (49), p.19369-19374
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Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels
Author / Creator:Duarte, Jill M ; Wall, P Kerr ; Edger, Patrick P ; Landherr, Lena L ; Ma, Hong ; Pires, J Chris ; Leebens-Mack, Jim ; dePamphilis, Claude W
Publisher:England: BioMed Central Ltd
Journal title:BMC evolutionary biology, 2010-02, Vol.10 (1), p.61-61
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De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum
Author / Creator:Der, Joshua P ; Barker, Michael S ; Wickett, Norman J ; dePamphilis, Claude W ; Wolf, Paul G
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2011-02, Vol.12 (1), p.99-99, Article 99
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Comparison of next generation sequencing technologies for transcriptome characterization
Author / Creator:Wall, P Kerr ; Leebens-Mack, Jim ; Chanderbali, André S ; Barakat, Abdelali ; Wolcott, Erik ; Liang, Haiying ; Landherr, Lena ; Tomsho, Lynn P ; Hu, Yi ; Carlson, John E ; Ma, Hong ; Schuster, Stephan C ; Soltis, Douglas E ; Soltis, Pamela S ; Altman, Naomi ; dePamphilis, Claude W
Publisher:England: BioMed Central
Journal title:BMC genomics, 2009-08, Vol.10 (1), p.347-347, Article 347
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Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants
Author / Creator:Barkman, Todd J ; McNeal, Joel R ; Lim, Seok-Hong ; Coat, Gwen ; Croom, Henrietta B ; Young, Nelson D ; Depamphilis, Claude W
Publisher:England: BioMed Central Ltd
Journal title:BMC evolutionary biology, 2007-12, Vol.7 (1), p.248-248
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A combination of conserved and diverged responses underlies Theobroma cacao's defense response to Phytophthora palmivora
Author / Creator:Winters, Noah P ; Wafula, Eric K ; Knollenberg, Benjamin J ; Hämälä, Tuomas ; Timilsena, Prakash R ; Perryman, Melanie ; Zhang, Dapeng ; Sheaffer, Lena L ; Praul, Craig A ; Ralph, Paula E ; Prewitt, Sarah ; Leandro-Muñoz, Mariela E ; Delgadillo-Duran, Diego A ; Altman, Naomi S ; Tiffin, Peter ; Maximova, Siela N ; dePamphilis, Claude W ; Marden, James H ; Guiltinan, Mark J
Publisher:England: BioMed Central Ltd
Journal title:BMC biology, 2024-02, Vol.22 (1), p.38-38, Article 38
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Showing 1 to 20 of 138 results

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GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

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MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs

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The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

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Genomic-scale exchange of mRNA between a parasitic plant and its hosts

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Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants

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Local Auxin Biosynthesis Mediated by a YUCCA Flavin Monooxygenase Regulates Haustorium Development in the Parasitic Plant Phtheirospermum japonicum

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Genomics of sorghum local adaptation to a parasitic plant

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RNA viruses in hymenopteran pollinators: evidence of inter-Taxa virus transmission via pollen and potential impact on non-Apis hymenopteran species

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Single-copy nuclear genes place haustorial Hydnoraceae within piperales and reveal a cretaceous origin of multiple parasitic angiosperm lineages

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FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar

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Compensatory sequence variation between trans -species small RNAs and their target sites

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Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

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Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

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Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes

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Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

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Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

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De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum

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Comparison of next generation sequencing technologies for transcriptome characterization

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Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants

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A combination of conserved and diverged responses underlies Theobroma cacao's defense response to Phytophthora palmivora

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