Discovery of widespread transcription initiation at microsatellites predictable by sequence-based de...
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
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Author / Creator
FANTOM consortium , Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States) , Grapotte, Mathys , Saraswat, Manu , Bessière, Chloé , Menichelli, Christophe , Ramilowski, Jordan A. , Severin, Jessica , Hayashizaki, Yoshihide , Itoh, Masayoshi , Tagami, Michihira , Murata, Mitsuyoshi , Kojima-Ishiyama, Miki , Noma, Shohei , Noguchi, Shuhei , Kasukawa, Takeya , Hasegawa, Akira , Suzuki, Harukazu , Nishiyori-Sueki, Hiromi , Frith, Martin C. , Chatelain, Clément , Carninci, Piero , de Hoon, Michiel J. L. , Wasserman, Wyeth W. , Bréhélin, Laurent and Lecellier, Charles-Henri
Publisher
London: Nature Publishing Group UK
Journal title
Language
English
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Publication information
Publisher
London: Nature Publishing Group UK
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More information
Scope and Contents
Contents
Using the Cap Analysis of Gene Expression (CAGE) technology, the FANTOM5 consortium provided one of the most comprehensive maps of transcription start sites (TSSs) in several species. Strikingly, ~72% of them could not be assigned to a specific gene and initiate at unconventional regions, outside promoters or enhancers. Here, we probe these unassig...
Alternative Titles
Full title
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
Authors, Artists and Contributors
Author / Creator
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Grapotte, Mathys
Saraswat, Manu
Bessière, Chloé
Menichelli, Christophe
Ramilowski, Jordan A.
Severin, Jessica
Hayashizaki, Yoshihide
Itoh, Masayoshi
Tagami, Michihira
Murata, Mitsuyoshi
Kojima-Ishiyama, Miki
Noma, Shohei
Noguchi, Shuhei
Kasukawa, Takeya
Hasegawa, Akira
Suzuki, Harukazu
Nishiyori-Sueki, Hiromi
Frith, Martin C.
Chatelain, Clément
Carninci, Piero
de Hoon, Michiel J. L.
Wasserman, Wyeth W.
Bréhélin, Laurent
Lecellier, Charles-Henri
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Primary Identifiers
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TN_cdi_doaj_primary_oai_doaj_org_article_2414817241b342aaa3ae4af0ca7b56ad
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_2414817241b342aaa3ae4af0ca7b56ad
Other Identifiers
ISSN
2041-1723
E-ISSN
2041-1723
DOI
10.1038/s41467-021-23143-7
