Effect of sequence depth and length in long-read assembly of the maize inbred NC358
Effect of sequence depth and length in long-read assembly of the maize inbred NC358
About this item
Full title
Author / Creator
Ou, Shujun , Liu, Jianing , Chougule, Kapeel M. , Fungtammasan, Arkarachai , Seetharam, Arun S. , Stein, Joshua C. , Llaca, Victor , Manchanda, Nancy , Gilbert, Amanda M. , Wei, Sharon , Chin, Chen-Shan , Hufnagel, David E. , Pedersen, Sarah , Snodgrass, Samantha J. , Fengler, Kevin , Woodhouse, Margaret , Walenz, Brian P. , Koren, Sergey , Phillippy, Adam M. , Hannigan, Brett T. , Dawe, R. Kelly , Hirsch, Candice N. , Hufford, Matthew B. and Ware, Doreen
Publisher
London: Nature Publishing Group UK
Journal title
Language
English
Formats
Publication information
Publisher
London: Nature Publishing Group UK
Subjects
More information
Scope and Contents
Contents
Improvements in long-read data and scaffolding technologies have enabled rapid generation of reference-quality assemblies for complex genomes. Still, an assessment of critical sequence depth and read length is important for allocating limited resources. To this end, we have generated eight assemblies for the complex genome of the maize inbred line...
Alternative Titles
Full title
Effect of sequence depth and length in long-read assembly of the maize inbred NC358
Authors, Artists and Contributors
Author / Creator
Liu, Jianing
Chougule, Kapeel M.
Fungtammasan, Arkarachai
Seetharam, Arun S.
Stein, Joshua C.
Llaca, Victor
Manchanda, Nancy
Gilbert, Amanda M.
Wei, Sharon
Chin, Chen-Shan
Hufnagel, David E.
Pedersen, Sarah
Snodgrass, Samantha J.
Fengler, Kevin
Woodhouse, Margaret
Walenz, Brian P.
Koren, Sergey
Phillippy, Adam M.
Hannigan, Brett T.
Dawe, R. Kelly
Hirsch, Candice N.
Hufford, Matthew B.
Ware, Doreen
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_doaj_primary_oai_doaj_org_article_9bfad55a4173428f8acffe7c51e13452
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_9bfad55a4173428f8acffe7c51e13452
Other Identifiers
ISSN
2041-1723
E-ISSN
2041-1723
DOI
10.1038/s41467-020-16037-7
