A solution to achieve sequencing from SARS-CoV-2 specimens with low viral loads: concatenation of re...
A solution to achieve sequencing from SARS-CoV-2 specimens with low viral loads: concatenation of reads from independent reactions
About this item
Full title
Author / Creator
Gregorio Marañón Microbiology-ID COVID 19 Study Group , On behalf of the Gregorio Marañón Microbiology-ID COVID 19 Study Group , Cerro-Monje, Alba , Buenestado-Serrano, Sergio , Palomino-Cabrera, Rosalía , Molero-Salinas, Andrea , Herranz, Marta , Alonso, Roberto , Catalán, Pilar , Muñoz, Patricia , García de Viedma, Darío and Pérez-Lago, Laura
Publisher
England: BioMed Central Ltd
Journal title
Language
English
Formats
Publication information
Publisher
England: BioMed Central Ltd
Subjects
More information
Scope and Contents
Contents
During the pandemic, whole genome sequencing was critical to characterize SARS-CoV-2 for surveillance, clinical and therapeutical purposes. However, low viral loads in specimens often led to suboptimal sequencing, making lineage assignment and phylogenetic analysis difficult. We propose an alternative approach to sequencing these specimens that inv...
Alternative Titles
Full title
A solution to achieve sequencing from SARS-CoV-2 specimens with low viral loads: concatenation of reads from independent reactions
Authors, Artists and Contributors
Author / Creator
On behalf of the Gregorio Marañón Microbiology-ID COVID 19 Study Group
Cerro-Monje, Alba
Buenestado-Serrano, Sergio
Palomino-Cabrera, Rosalía
Molero-Salinas, Andrea
Herranz, Marta
Alonso, Roberto
Catalán, Pilar
Muñoz, Patricia
García de Viedma, Darío
Pérez-Lago, Laura
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_doaj_primary_oai_doaj_org_article_c991d570b50746199a46c5e2fee573dc
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_c991d570b50746199a46c5e2fee573dc
Other Identifiers
ISSN
1743-422X
E-ISSN
1743-422X
DOI
10.1186/s12985-024-02347-5
