Inferring spatial and signaling relationships between cells from single cell transcriptomic data
Inferring spatial and signaling relationships between cells from single cell transcriptomic data
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London: Nature Publishing Group UK
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English
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London: Nature Publishing Group UK
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Single-cell RNA sequencing (scRNA-seq) provides details for individual cells; however, crucial spatial information is often lost. We present SpaOTsc, a method relying on structured optimal transport to recover spatial properties of scRNA-seq data by utilizing spatial measurements of a relatively small number of genes. A spatial metric for individua...
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Inferring spatial and signaling relationships between cells from single cell transcriptomic data
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TN_cdi_doaj_primary_oai_doaj_org_article_f4a6e22defa144b7ba4de8cfceb89169
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https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_f4a6e22defa144b7ba4de8cfceb89169
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ISSN
2041-1723
E-ISSN
2041-1723
DOI
10.1038/s41467-020-15968-5
