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PEMA: from the raw .fastq files of 16S rRNA and COI marker genes to the (M)OTU-table, a thorough met...

PEMA: from the raw .fastq files of 16S rRNA and COI marker genes to the (M)OTU-table, a thorough met...

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_proquest_journals_2260501110

PEMA: from the raw .fastq files of 16S rRNA and COI marker genes to the (M)OTU-table, a thorough metabarcoding analysis

About this item

Full title

PEMA: from the raw .fastq files of 16S rRNA and COI marker genes to the (M)OTU-table, a thorough metabarcoding analysis

Publisher

Cold Spring Harbor: Cold Spring Harbor Laboratory Press

Journal title

bioRxiv, 2019-07

Language

English

Formats

Publication information

Publisher

Cold Spring Harbor: Cold Spring Harbor Laboratory Press

More information

Scope and Contents

Contents

Background: Environmental DNA (eDNA) and metabarcoding, allow the identification of a mixture of individuals and launch a new era in bio- and eco-assessment. A number of steps are required to obtain taxonomically assigned (Molecular) Operational Taxonomic Unit ((M)OTU) tables from raw data. For most of these, a plethora of tools is available; each...

Alternative Titles

Full title

PEMA: from the raw .fastq files of 16S rRNA and COI marker genes to the (M)OTU-table, a thorough metabarcoding analysis

Identifiers

Primary Identifiers

Record Identifier

TN_cdi_proquest_journals_2260501110

Permalink

https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_proquest_journals_2260501110

Other Identifiers

E-ISSN

2692-8205

DOI

10.1101/709113