ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
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Publisher
England: BioMed Central Ltd
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Language
English
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Publisher
England: BioMed Central Ltd
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Scope and Contents
Contents
Chromatin interaction analysis with paired-end tag sequencing (ChIA-PET) is a new technology to study genome-wide long-range chromatin interactions bound by protein factors. Here we present ChIA-PET Tool, a software package for automatic processing of ChIA-PET sequence data, including linker filtering, mapping tags to reference genomes, identifying protein binding sites and chromatin interactions, and displaying the results on a graphical genome browser. ChIA-PET Tool is fast, accurate, comprehensive, user-friendly, and open source (available at http://chiapet.gis.a-star.edu.sg)....
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Full title
ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
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Record Identifier
TN_cdi_proquest_miscellaneous_733548367
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_proquest_miscellaneous_733548367
Other Identifiers
ISSN
1474-760X
E-ISSN
1474-760X
DOI
10.1186/gb-2010-11-2-r22
