Systematic benchmarking of single-cell ATAC-sequencing protocols
Systematic benchmarking of single-cell ATAC-sequencing protocols
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Full title
Author / Creator
De Rop, Florian V. , Hulselmans, Gert , Flerin, Chris , Soler-Vila, Paula , Rafels, Albert , Christiaens, Valerie , González-Blas, Carmen Bravo , Marchese, Domenica , Caratù, Ginevra , Poovathingal, Suresh , Rozenblatt-Rosen, Orit , Slyper, Michael , Luo, Wendy , Muus, Christoph , Duarte, Fabiana , Shrestha, Rojesh , Bagdatli, S. Tansu , Corces, M. Ryan , Mamanova, Lira , Knights, Andrew , Meyer, Kerstin B. , Mulqueen, Ryan , Taherinasab, Akram , Maschmeyer, Patrick , Pezoldt, Jörn , Lambert, Camille Lucie Germaine , Iglesias, Marta , Najle, Sebastián R. , Dossani, Zain Y. , Martelotto, Luciano G. , Burkett, Zach , Lebofsky, Ronald , Martin-Subero, José Ignacio , Pillai, Satish , Sebé-Pedrós, Arnau , Deplancke, Bart , Teichmann, Sarah A. , Ludwig, Leif S. , Braun, Theodore P. , Adey, Andrew C. , Greenleaf, William J. , Buenrostro, Jason D. , Regev, Aviv , Aerts, Stein and Heyn, Holger
Publisher
New York: Nature Publishing Group US
Journal title
Language
English
Formats
Publication information
Publisher
New York: Nature Publishing Group US
Subjects
More information
Scope and Contents
Contents
Single-cell assay for transposase-accessible chromatin by sequencing (scATAC-seq) has emerged as a powerful tool for dissecting regulatory landscapes and cellular heterogeneity. However, an exploration of systemic biases among scATAC-seq technologies has remained absent. In this study, we benchmark the performance of eight scATAC-seq methods across...
Alternative Titles
Full title
Systematic benchmarking of single-cell ATAC-sequencing protocols
Authors, Artists and Contributors
Author / Creator
Hulselmans, Gert
Flerin, Chris
Soler-Vila, Paula
Rafels, Albert
Christiaens, Valerie
González-Blas, Carmen Bravo
Marchese, Domenica
Caratù, Ginevra
Poovathingal, Suresh
Rozenblatt-Rosen, Orit
Slyper, Michael
Luo, Wendy
Muus, Christoph
Duarte, Fabiana
Shrestha, Rojesh
Bagdatli, S. Tansu
Corces, M. Ryan
Mamanova, Lira
Knights, Andrew
Meyer, Kerstin B.
Mulqueen, Ryan
Taherinasab, Akram
Maschmeyer, Patrick
Pezoldt, Jörn
Lambert, Camille Lucie Germaine
Iglesias, Marta
Najle, Sebastián R.
Dossani, Zain Y.
Martelotto, Luciano G.
Burkett, Zach
Lebofsky, Ronald
Martin-Subero, José Ignacio
Pillai, Satish
Sebé-Pedrós, Arnau
Deplancke, Bart
Teichmann, Sarah A.
Ludwig, Leif S.
Braun, Theodore P.
Adey, Andrew C.
Greenleaf, William J.
Buenrostro, Jason D.
Regev, Aviv
Aerts, Stein
Heyn, Holger
Identifiers
Primary Identifiers
Record Identifier
TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11180611
Permalink
https://devfeature-collection.sl.nsw.gov.au/record/TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11180611
Other Identifiers
ISSN
1087-0156,1546-1696
E-ISSN
1546-1696
DOI
10.1038/s41587-023-01881-x
