Search the collection

98 results for Aerts,+Stein

Sort by:

Sort by

Limit results to:

20 per page

98 results for Aerts,+Stein

Export to excel

Export record to excel

File type to download

Beta version

Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 1
ArticlesPeer ReviewedFull Text
A scalable SCENIC workflow for single-cell gene regulatory network analysis
Author / Creator:Van de Sande, Bram ; Flerin, Christopher ; Davie, Kristofer ; De Waegeneer, Maxime ; Hulselmans, Gert ; Aibar, Sara ; Seurinck, Ruth ; Saelens, Wouter ; Cannoodt, Robrecht ; Rouchon, Quentin ; Verbeiren, Toni ; De Maeyer, Dries ; Reumers, Joke ; Saeys, Yvan ; Aerts, Stein
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2020-07, Vol.15 (7), p.2247-2276
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 2
ArticlesPeer ReviewedFull Text
cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data
Author / Creator:Bravo González-Blas, Carmen ; Minnoye, Liesbeth ; Papasokrati, Dafni ; Aibar, Sara ; Hulselmans, Gert ; Christiaens, Valerie ; Davie, Kristofer ; Wouters, Jasper ; Aerts, Stein
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2019-05, Vol.16 (5), p.397-400
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 3
ArticlesPeer ReviewedFull Text
SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks
Author / Creator:Bravo González-Blas, Carmen ; De Winter, Seppe ; Hulselmans, Gert ; Hecker, Nikolai ; Matetovici, Irina ; Christiaens, Valerie ; Poovathingal, Suresh ; Wouters, Jasper ; Aibar, Sara ; Aerts, Stein
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2023-09, Vol.20 (9), p.1355-1367
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 4
ArticlesPeer ReviewedFull Text
Phenotype molding of stromal cells in the lung tumor microenvironment
Author / Creator:Lambrechts, Diether ; Wauters, Els ; Boeckx, Bram ; Aibar, Sara ; Nittner, David ; Burton, Oliver ; Bassez, Ayse ; Decaluwé, Herbert ; Pircher, Andreas ; Van den Eynde, Kathleen ; Weynand, Birgit ; Verbeken, Erik ; De Leyn, Paul ; Liston, Adrian ; Vansteenkiste, Johan ; Carmeliet, Peter ; Aerts, Stein ; Thienpont, Bernard
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2018-08, Vol.24 (8), p.1277-1289
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 5
ArticlesPeer ReviewedFull Text
Actuation enhances patterning in human neural tube organoids
Author / Creator:Abdel Fattah, Abdel Rahman ; Daza, Brian ; Rustandi, Gregorius ; Berrocal-Rubio, Miguel Ángel ; Gorissen, Benjamin ; Poovathingal, Suresh ; Davie, Kristofer ; Barrasa-Fano, Jorge ; Cóndor, Mar ; Cao, Xuanye ; Rosenzweig, Derek Hadar ; Lei, Yunping ; Finnell, Richard ; Verfaillie, Catherine ; Sampaolesi, Maurilio ; Dedecker, Peter ; Van Oosterwyck, Hans ; Aerts, Stein ; Ranga, Adrian
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-05, Vol.12 (1), p.3192-3192, Article 3192
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 6
ArticlesPeer ReviewedFull Text
Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma
Author / Creator:Wouters, Jasper ; Kalender-Atak, Zeynep ; Minnoye, Liesbeth ; Spanier, Katina I. ; De Waegeneer, Maxime ; Bravo González-Blas, Carmen ; Mauduit, David ; Davie, Kristofer ; Hulselmans, Gert ; Najem, Ahmad ; Dewaele, Michael ; Pedri, Dennis ; Rambow, Florian ; Makhzami, Samira ; Christiaens, Valerie ; Ceyssens, Frederik ; Ghanem, Ghanem ; Marine, Jean-Christophe ; Poovathingal, Suresh ; Aerts, Stein
Publisher:London: Nature Publishing Group UK
Journal title:Nature cell biology, 2020-08, Vol.22 (8), p.986-998
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 7
ArticlesPeer ReviewedFull Text
Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin Profiling
Author / Creator:Davie, Kristofer ; Jacobs, Jelle ; Atkins, Mardelle ; Potier, Delphine ; Christiaens, Valerie ; Halder, Georg ; Aerts, Stein
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2015-02, Vol.11 (2), p.e1004994
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 8
ArticlesPeer ReviewedFull Text
Melanoma addiction to the long non-coding RNA SAMMSON
Author / Creator:Leucci, Eleonora ; Vendramin, Roberto ; Spinazzi, Marco ; Laurette, Patrick ; Fiers, Mark ; Wouters, Jasper ; Radaelli, Enrico ; Eyckerman, Sven ; Leonelli, Carina ; Vanderheyden, Katrien ; Rogiers, Aljosja ; Hermans, Els ; Baatsen, Pieter ; Aerts, Stein ; Amant, Frederic ; Van Aelst, Stefan ; van den Oord, Joost ; de Strooper, Bart ; Davidson, Irwin ; Lafontaine, Denis L. J. ; Gevaert, Kris ; Vandesompele, Jo ; Mestdagh, Pieter ; Marine, Jean-Christophe
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2016-03, Vol.531 (7595), p.518-522
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 9
ArticlesPeer ReviewedFull Text
iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections
Author / Creator:Janky, Rekin's ; Verfaillie, Annelien ; Imrichová, Hana ; Van de Sande, Bram ; Standaert, Laura ; Christiaens, Valerie ; Hulselmans, Gert ; Herten, Koen ; Naval Sanchez, Marina ; Potier, Delphine ; Svetlichnyy, Dmitry ; Kalender Atak, Zeynep ; Fiers, Mark ; Marine, Jean-Christophe ; Aerts, Stein
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2014-07, Vol.10 (7), p.e1003731-e1003731
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 10
ArticlesPeer ReviewedFull Text
Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state
Author / Creator:Verfaillie, Annelien ; Imrichova, Hana ; Atak, Zeynep Kalender ; Dewaele, Michael ; Rambow, Florian ; Hulselmans, Gert ; Christiaens, Valerie ; Svetlichnyy, Dmitry ; Luciani, Flavie ; Van den Mooter, Laura ; Claerhout, Sofie ; Fiers, Mark ; Journe, Fabrice ; Ghanem, Ghanem-Elias ; Herrmann, Carl ; Halder, Georg ; Marine, Jean-Christophe ; Aerts, Stein
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2015-04, Vol.6 (1), p.6683-6683, Article 6683
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 11
ArticlesPeer ReviewedFull Text
Cell type diversity in a developing octopus brain
Author / Creator:Styfhals, Ruth ; Zolotarov, Grygoriy ; Hulselmans, Gert ; Spanier, Katina I. ; Poovathingal, Suresh ; Elagoz, Ali M. ; De Winter, Seppe ; Deryckere, Astrid ; Rajewsky, Nikolaus ; Ponte, Giovanna ; Fiorito, Graziano ; Aerts, Stein ; Seuntjens, Eve
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-11, Vol.13 (1), p.7392-7392, Article 7392
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 12
ArticlesPeer ReviewedFull Text
Spatial transcriptomics in the adult Drosophila brain and body
Author / Creator:Janssens, Jasper ; Mangeol, Pierre ; Hecker, Nikolai ; Partel, Gabriele ; Spanier, Katina I ; Ismail, Joy N ; Hulselmans, Gert J ; Aerts, Stein ; Schnorrer, Frank
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2025-03, Vol.13
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 13
ArticlesPeer ReviewedFull Text
Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells
Author / Creator:Laurette, Patrick ; Strub, Thomas ; Koludrovic, Dana ; Keime, Céline ; Le Gras, Stéphanie ; Seberg, Hannah ; Van Otterloo, Eric ; Imrichova, Hana ; Siddaway, Robert ; Aerts, Stein ; Cornell, Robert A ; Mengus, Gabrielle ; Davidson, Irwin
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2015-03, Vol.4 (Art. n°e06857)
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 14
ArticlesPeer ReviewedFull Text
Alteration of the microRNA network during the progression of Alzheimer's disease
Author / Creator:Lau, Pierre ; Bossers, Koen ; Janky, Rekin's ; Salta, Evgenia ; Frigerio, Carlo Sala ; Barbash, Shahar ; Rothman, Roy ; Sierksma, Annerieke S. R. ; Thathiah, Amantha ; Greenberg, David ; Papadopoulou, Aikaterini S. ; Achsel, Tilmann ; Ayoubi, Torik ; Soreq, Hermona ; Verhaagen, Joost ; Swaab, Dick F. ; Aerts, Stein ; De Strooper, Bart
Publisher:London: Nature Publishing Group UK
Journal title:EMBO molecular medicine, 2013-10, Vol.5 (10), p.1613-1634
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 15
ArticlesPeer ReviewedFull Text
Analysis of long and short enhancers in melanoma cell states
Author / Creator:Mauduit, David ; Taskiran, Ibrahim Ihsan ; Minnoye, Liesbeth ; de Waegeneer, Maxime ; Christiaens, Valerie ; Hulselmans, Gert ; Demeulemeester, Jonas ; Wouters, Jasper ; Aerts, Stein
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2021-12, Vol.10
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 16
ArticlesPeer ReviewedFull Text
Synaptic deregulation of cholinergic projection neurons causes olfactory dysfunction across five fly Parkinsonism models
Author / Creator:Pech, Ulrike ; Janssens, Jasper ; Schoovaerts, Nils ; Kuenen, Sabine ; Calatayud Aristoy, Carles ; Gallego, Sandra F ; Makhzami, Samira ; Hulselmans, Gert J ; Poovathingal, Suresh ; Davie, Kristofer ; Bademosi, Adekunle T ; Swerts, Jef ; Vilain, Sven ; Aerts, Stein ; Verstreken, Patrik
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2025-04, Vol.13
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 17
ArticlesPeer ReviewedFull Text
Comparative analysis of antibody- and lipid-based multiplexing methods for single-cell RNA-seq
Author / Creator:Mylka, Viacheslav ; Matetovici, Irina ; Poovathingal, Suresh ; Aerts, Jeroen ; Vandamme, Niels ; Seurinck, Ruth ; Verstaen, Kevin ; Hulselmans, Gert ; Van den Hoecke, Silvie ; Scheyltjens, Isabelle ; Movahedi, Kiavash ; Wils, Hans ; Reumers, Joke ; Van Houdt, Jeroen ; Aerts, Stein ; Saeys, Yvan
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2022-02, Vol.23 (1), p.55-55, Article 55
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 18
ArticlesPeer ReviewedFull Text
Identification of genomic enhancers through spatial integration of single‐cell transcriptomics and epigenomics
Author / Creator:Bravo González‐Blas, Carmen ; Quan, Xiao‐Jiang ; Duran‐Romaña, Ramon ; Taskiran, Ibrahim Ihsan ; Koldere, Duygu ; Davie, Kristofer ; Christiaens, Valerie ; Makhzami, Samira ; Hulselmans, Gert ; de Waegeneer, Maxime ; Mauduit, David ; Poovathingal, Suresh ; Aibar, Sara ; Aerts, Stein
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2020-05, Vol.16 (5), p.e9438-n/a
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 19
ArticlesPeer ReviewedFull Text
Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads
Author / Creator:De Rop, Florian V ; Ismail, Joy N ; Bravo González-Blas, Carmen ; Hulselmans, Gert J ; Flerin, Christopher Campbell ; Janssens, Jasper ; Theunis, Koen ; Christiaens, Valerie M ; Wouters, Jasper ; Marcassa, Gabriele ; de Wit, Joris ; Poovathingal, Suresh ; Aerts, Stein
Publisher:England: eLife Sciences Publications, Ltd
Journal title:eLife, 2022-02, Vol.11
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.
Export this record
Export to excel
Print
Export record to excel
File type to download
Beta version
Select record 20
ArticlesPeer ReviewedFull Text
Shared enhancer gene regulatory networks between wound and oncogenic programs
Author / Creator:Floc'hlay, Swann ; Balaji, Ramya ; Stanković, Dimitrije ; Christiaens, Valerie M ; Bravo González-Blas, Carmen ; De Winter, Seppe ; Hulselmans, Gert J ; De Waegeneer, Maxime ; Quan, Xiaojiang ; Koldere, Duygu ; Atkins, Mardelle ; Halder, Georg ; Uhlirova, Mirka ; Classen, Anne-Kathrin ; Aerts, Stein
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2023-05, Vol.12
View online as a Library member
Access ebook if you are in the Library. Registered NSW residents may log in from home.

Showing 1 to 20 of 98 results

Export record to excel

Export this record

Export record to excel

A scalable SCENIC workflow for single-cell gene regulatory network analysis

Export this record

Export record to excel

cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data

Export this record

Export record to excel

SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks

Export this record

Export record to excel

Phenotype molding of stromal cells in the lung tumor microenvironment

Export this record

Export record to excel

Actuation enhances patterning in human neural tube organoids

Export this record

Export record to excel

Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma

Export this record

Export record to excel

Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin Profiling

Export this record

Export record to excel

Melanoma addiction to the long non-coding RNA SAMMSON

Export this record

Export record to excel

iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

Export this record

Export record to excel

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

Export this record

Export record to excel

Cell type diversity in a developing octopus brain

Export this record

Export record to excel

Spatial transcriptomics in the adult Drosophila brain and body

Export this record

Export record to excel

Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells

Export this record

Export record to excel

Alteration of the microRNA network during the progression of Alzheimer's disease

Export this record

Export record to excel

Analysis of long and short enhancers in melanoma cell states

Export this record

Export record to excel

Synaptic deregulation of cholinergic projection neurons causes olfactory dysfunction across five fly Parkinsonism models

Export this record

Export record to excel

Comparative analysis of antibody- and lipid-based multiplexing methods for single-cell RNA-seq

Export this record

Export record to excel

Identification of genomic enhancers through spatial integration of single‐cell transcriptomics and epigenomics

Export this record

Export record to excel

Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads

Export this record

Export record to excel

Shared enhancer gene regulatory networks between wound and oncogenic programs

Refine your search