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71 results for Bravo,+Hector+Corrada

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Select record 21
ArticlesPeer ReviewedFull Text
Increased methylation variation in epigenetic domains across cancer types
Author / Creator:Hansen, Kasper Daniel ; Timp, Winston ; Bravo, Héctor Corrada ; Sabunciyan, Sarven ; Langmead, Benjamin ; McDonald, Oliver G ; Wen, Bo ; Wu, Hao ; Liu, Yun ; Diep, Dinh ; Briem, Eirikur ; Zhang, Kun ; Irizarry, Rafael A ; Feinberg, Andrew P
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2011-08, Vol.43 (8), p.768-775
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ArticlesPeer ReviewedFull Text
Epiviz: interactive visual analytics for functional genomics data
Author / Creator:Chelaru, Florin ; Smith, Llewellyn ; Goldstein, Naomi ; Bravo, Héctor Corrada
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2014-09, Vol.11 (9), p.938-940
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Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions
Author / Creator:Dillon, Laura A. L. ; Suresh, Rahul ; Okrah, Kwame ; Corrada Bravo, Hector ; Mosser, David M. ; El-Sayed, Najib M.
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2015-12, Vol.16 (1), p.1108-1108, Article 1108
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ArticlesPeer ReviewedFull Text
Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection
Author / Creator:Li, Yuan ; Shah-Simpson, Sheena ; Okrah, Kwame ; Belew, A. Trey ; Choi, Jungmin ; Caradonna, Kacey L. ; Padmanabhan, Prasad ; Ndegwa, David M. ; Temanni, M. Ramzi ; Corrada Bravo, Héctor ; El-Sayed, Najib M. ; Burleigh, Barbara A.
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2016-04, Vol.12 (4), p.e1005511-e1005511
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Analysis and correction of compositional bias in sparse sequencing count data
Author / Creator:Kumar, M. Senthil ; Slud, Eric V. ; Okrah, Kwame ; Hicks, Stephanie C. ; Hannenhalli, Sridhar ; Corrada Bravo, Héctor
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2018-11, Vol.19 (1), p.799-799, Article 799
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Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors
Author / Creator:Timp, Winston ; Bravo, Hector Corrada ; McDonald, Oliver G ; Goggins, Michael ; Umbricht, Chris ; Zeiger, Martha ; Feinberg, Andrew P ; Irizarry, Rafael A
Publisher:England: BioMed Central Ltd
Journal title:Genome medicine, 2014-08, Vol.6 (8), p.61-61, Article 61
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Select record 27
ArticlesPeer ReviewedFull Text
Epiviz: a view inside the design of an integrated visual analysis software for genomics
Author / Creator:Chelaru, Florin ; Corrada Bravo, Héctor
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2015-08, Vol.16 (S11), p.S4-S4, Article S4
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ArticlesPeer ReviewedFull Text
Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis
Author / Creator:Gunady, Mohamed K ; Mount, Stephen M ; Corrada Bravo, Héctor
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2019-08, Vol.20 (1), p.421-421, Article 421
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Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment
Author / Creator:Pop, Mihai ; Paulson, Joseph N. ; Chakraborty, Subhra ; Astrovskaya, Irina ; Lindsay, Brianna R. ; Li, Shan ; Bravo, Héctor Corrada ; Harro, Clayton ; Parkhill, Julian ; Walker, Alan W. ; Walker, Richard I. ; Sack, David A. ; Stine, O. Colin
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2016-06, Vol.17 (1), p.440-440, Article 440
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Model-Based Quality Assessment and Base-Calling for Second-Generation Sequencing Data
Author / Creator:Bravo, Héctor Corrada ; Irizarry, Rafael A.
Publisher:Malden, USA: Blackwell Publishing Inc
Journal title:Biometrics, 2010-09, Vol.66 (3), p.665-674
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Removing batch effects for prediction problems with frozen surrogate variable analysis
Author / Creator:Parker, Hilary S. ; Corrada Bravo, Héctor ; Leek, Jeffrey T.
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2014-09, Vol.2, p.e561-e561
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Select record 32
ArticlesPeer ReviewedFull Text
Intensity normalization improves color calling in SOLiD sequencing
Author / Creator:Wu, Hao ; Irizarry, Rafael A ; Bravo, Héctor Corrada
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2010-05, Vol.7 (5), p.336-337
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ArticlesPeer ReviewedFull Text
microbiomeDASim: Simulating longitudinal differential abundance for microbiome data [version 2; peer review: 1 approved, 1 approved with reservations]
Author / Creator:Williams, Justin ; Bravo, Hector Corrada ; Tom, Jennifer ; Paulson, Joseph Nathaniel
Publisher:England: Faculty of 1000 Ltd
Journal title:F1000 research, 2019, Vol.8, p.1769-1769
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Select record 34
ArticlesPeer ReviewedFull Text
Epiviz Web Components: reusable and extensible component library to visualize functional genomic datasets
Author / Creator:Kancherla, Jayaram ; Zhang, Alexander ; Gottfried, Brian ; Bravo, Hector Corrada
Publisher:England: Faculty of 1000 Ltd
Journal title:F1000 research, 2018, Vol.7, p.1096-1096
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Select record 35
ArticlesPeer ReviewedFull Text
A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures
Author / Creator:Olson, Nathan D. ; Kumar, M. Senthil ; Li, Shan ; Braccia, Domenick J. ; Hao, Stephanie ; Timp, Winston ; Salit, Marc L. ; Stine, O. Colin ; Bravo, Hector Corrada
Publisher:England: BioMed Central Ltd
Journal title:Microbiome, 2020-03, Vol.8 (1), p.35-18, Article 35
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Select record 36
ArticlesPeer ReviewedFull Text
Gene Expression Signatures Based on Variability can Robustly Predict Tumor Progression and Prognosis
Author / Creator:Dinalankara, Wikum ; Bravo, Héctor Corrada
Publisher:London, England: SAGE Publishing
Journal title:Cancer informatics, 2015-01, Vol.2015 (14), p.CIN.S23862-81
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Select record 37
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Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz [version 2; peer review: 3 approved]
Author / Creator:Wagner, Justin ; Kancherla, Jayaram ; Braccia, Domenick ; Matsumara, James ; Felix, Victor ; Crabtree, Jonathan ; Mahurkar, Anup ; Corrada Bravo, Héctor
Publisher:London: Faculty of 1000 Ltd
Journal title:F1000 research, 2020-01, Vol.9, p.601-601
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Select record 38
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Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis
Author / Creator:Niranjan, Tejasvi S ; Adamczyk, Abby ; Bravo, Héctor Corrada ; Taub, Margaret A ; Wheelan, Sarah J ; Irizarry, Rafael ; Wang, Tao
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2011-09, Vol.12 (9), p.R93-R93, Article R93
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Select record 39
ArticlesPeer ReviewedFull Text
Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz [version 1; peer review: 3 approved]
Author / Creator:Wagner, Justin ; Kancherla, Jayaram ; Braccia, Domenick ; Matsumara, James ; Felix, Victor ; Crabtree, Jonathan ; Mahurkar, Anup ; Corrada Bravo, Héctor
Publisher:England: Faculty of 1000 Ltd
Journal title:F1000 research, 2020, Vol.9, p.601
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Select record 40
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Examining the relative influence of familial, genetic, and environmental covariate information in flexible risk models
Author / Creator:Bravo, Héctor Corrada ; Lee, Kristine E ; Klein, Barbara E.K ; Klein, Ronald ; Iyengar, Sudha K ; Wahba, Grace
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2009-05, Vol.106 (20), p.8128-8133
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Showing 21 to 40 of 71 results

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Increased methylation variation in epigenetic domains across cancer types

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Epiviz: interactive visual analytics for functional genomics data

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Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions

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Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection

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Analysis and correction of compositional bias in sparse sequencing count data

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Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors

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Epiviz: a view inside the design of an integrated visual analysis software for genomics

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Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis

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Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment

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Model-Based Quality Assessment and Base-Calling for Second-Generation Sequencing Data

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Removing batch effects for prediction problems with frozen surrogate variable analysis

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Intensity normalization improves color calling in SOLiD sequencing

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microbiomeDASim: Simulating longitudinal differential abundance for microbiome data [version 2; peer review: 1 approved, 1 approved with reservations]

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Epiviz Web Components: reusable and extensible component library to visualize functional genomic datasets

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A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures

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Gene Expression Signatures Based on Variability can Robustly Predict Tumor Progression and Prognosis

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Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz [version 2; peer review: 3 approved]

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Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis

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Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz [version 1; peer review: 3 approved]

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Examining the relative influence of familial, genetic, and environmental covariate information in flexible risk models

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