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229 results for Altman,+Russ+B.

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ArticlesPeer ReviewedFull Text
3D deep convolutional neural networks for amino acid environment similarity analysis
Author / Creator:Torng, Wen ; Altman, Russ B
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2017-06, Vol.18 (1), p.302-302, Article 302
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ArticlesPeer ReviewedFull Text
Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features
Author / Creator:Yu, Kun-Hsing ; Zhang, Ce ; Berry, Gerald J. ; Altman, Russ B. ; Ré, Christopher ; Rubin, Daniel L. ; Snyder, Michael
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-08, Vol.7 (1), p.12474-12474, Article 12474
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ArticlesPeer ReviewedFull Text
Protein sequence design with a learned potential
Author / Creator:Anand, Namrata ; Eguchi, Raphael ; Mathews, Irimpan I. ; Perez, Carla P. ; Derry, Alexander ; Altman, Russ B. ; Huang, Po-Ssu
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-02, Vol.13 (1), p.746-11, Article 746
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ArticlesPeer ReviewedFull Text
Multilingual translation for zero-shot biomedical classification using BioTranslator
Author / Creator:Xu, Hanwen ; Woicik, Addie ; Poon, Hoifung ; Altman, Russ B. ; Wang, Sheng
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-02, Vol.14 (1), p.738-738, Article 738
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ArticlesPeer ReviewedFull Text
Predicting HLA class II antigen presentation through integrated deep learning
Author / Creator:Chen, Binbin ; Khodadoust, Michael S. ; Olsson, Niclas ; Wagar, Lisa E. ; Fast, Ethan ; Liu, Chih Long ; Muftuoglu, Yagmur ; Sworder, Brian J. ; Diehn, Maximilian ; Levy, Ronald ; Davis, Mark M. ; Elias, Joshua E. ; Altman, Russ B. ; Alizadeh, Ash A.
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2019-11, Vol.37 (11), p.1332-1343
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ArticlesPeer ReviewedFull Text
Data-driven human transcriptomic modules determined by independent component analysis
Author / Creator:Zhou, Weizhuang ; Altman, Russ B
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2018-09, Vol.19 (1), p.327-327, Article 327
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Cloud-based simulations on Google Exacycle reveal ligand modulation of GPCR activation pathways
Author / Creator:Kohlhoff, Kai J. ; Shukla, Diwakar ; Lawrenz, Morgan ; Bowman, Gregory R. ; Konerding, David E. ; Belov, Dan ; Altman, Russ B. ; Pande, Vijay S.
Publisher:London: Nature Publishing Group UK
Journal title:Nature chemistry, 2014-01, Vol.6 (1), p.15-21
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ArticlesPeer ReviewedFull Text
Large-scale labeling and assessment of sex bias in publicly available expression data
Author / Creator:Flynn, Emily ; Chang, Annie ; Altman, Russ B
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2021-03, Vol.22 (1), p.168-168, Article 168
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ArticlesPeer ReviewedFull Text
A deep learning framework to predict binding preference of RNA constituents on protein surface
Author / Creator:Lam, Jordy Homing ; Li, Yu ; Zhu, Lizhe ; Umarov, Ramzan ; Jiang, Hanlun ; Héliou, Amélie ; Sheong, Fu Kit ; Liu, Tianyun ; Long, Yongkang ; Li, Yunfei ; Fang, Liang ; Altman, Russ B. ; Chen, Wei ; Huang, Xuhui ; Gao, Xin
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-10, Vol.10 (1), p.4941-13, Article 4941
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ArticlesPeer ReviewedFull Text
Construction of disease-specific cytokine profiles by associating disease genes with immune responses
Author / Creator:Liu, Tianyun ; Wang, Shiyin ; Wornow, Michael ; Altman, Russ B
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2022-04, Vol.18 (4), p.e1009497-e1009497
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ArticlesPeer ReviewedFull Text
Quantifying the Severity of Adverse Drug Reactions Using Social Media: Network Analysis
Author / Creator:Lavertu, Adam ; Hamamsy, Tymor ; Altman, Russ B
Publisher:Toronto: Gunther Eysenbach MD MPH, Associate Professor
Journal title:Journal of medical Internet research, 2021-10, Vol.23 (10), p.e27714-e27714
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ArticlesPeer ReviewedFull Text
Leveraging the Cell Ontology to classify unseen cell types
Author / Creator:Wang, Sheng ; Pisco, Angela Oliveira ; McGeever, Aaron ; Brbic, Maria ; Zitnik, Marinka ; Darmanis, Spyros ; Leskovec, Jure ; Karkanias, Jim ; Altman, Russ B.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-09, Vol.12 (1), p.5556-5556, Article 5556
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ArticlesPeer ReviewedFull Text
Learning the Structure of Biomedical Relationships from Unstructured Text
Author / Creator:Percha, Bethany ; Altman, Russ B
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2015-07, Vol.11 (7), p.e1004216
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ArticlesPeer ReviewedFull Text
Opportunities for developing therapies for rare genetic diseases: focus on gain-of-function and allostery
Author / Creator:Chen, Binbin ; Altman, Russ B
Publisher:England: BioMed Central
Journal title:Orphanet journal of rare diseases, 2017-04, Vol.12 (1), p.61-61, Article 61
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ArticlesPeer ReviewedFull Text
Transfer learning enables prediction of CYP2D6 haplotype function
Author / Creator:McInnes, Gregory ; Dalton, Rachel ; Sangkuhl, Katrin ; Whirl-Carrillo, Michelle ; Lee, Seung-Been ; Tsao, Philip S ; Gaedigk, Andrea ; Altman, Russ B ; Woodahl, Erica L
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2020-11, Vol.16 (11), p.e1008399
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ArticlesPeer ReviewedFull Text
Using multiple microenvironments to find similar ligand-binding sites: application to kinase inhibitor binding
Author / Creator:Liu, Tianyun ; Altman, Russ B
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2011-12, Vol.7 (12), p.e1002326
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ArticlesPeer ReviewedFull Text
Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text
Author / Creator:Garten, Yael ; Altman, Russ B
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2009-02, Vol.10 Suppl 2 (S2), p.S6-S6, Article S6
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ArticlesPeer ReviewedFull Text
Using GPT-3 to Build a Lexicon of Drugs of Abuse Synonyms for Social Media Pharmacovigilance
Author / Creator:Carpenter, Kristy A ; Altman, Russ B
Publisher:Switzerland: MDPI AG
Journal title:Biomolecules (Basel, Switzerland), 2023-02, Vol.13 (2), p.387
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ArticlesPeer ReviewedFull Text
Modeling drug response using network-based personalized treatment prediction (NetPTP) with applications to inflammatory bowel disease
Author / Creator:Han, Lichy ; Sayyid, Zahra N ; Altman, Russ B
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2021-02, Vol.17 (2), p.e1008631-e1008631
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ArticlesPeer ReviewedFull Text
Challenges in the clinical application of whole-genome sequencing
Author / Creator:Ormond, Kelly E, MSc ; Wheeler, Matthew T, MD ; Hudgins, Louanne, Prof ; Klein, Teri E, PhD ; Butte, Atul J, MD ; Altman, Russ B, Prof ; Ashley, Euan A, MRCP ; Greely, Henry T, Prof
Publisher:England: Elsevier Ltd
Journal title:The Lancet (British edition), 2010-05, Vol.375 (9727), p.1749-1751
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3D deep convolutional neural networks for amino acid environment similarity analysis

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Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features

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Protein sequence design with a learned potential

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Multilingual translation for zero-shot biomedical classification using BioTranslator

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Predicting HLA class II antigen presentation through integrated deep learning

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Data-driven human transcriptomic modules determined by independent component analysis

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Cloud-based simulations on Google Exacycle reveal ligand modulation of GPCR activation pathways

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Large-scale labeling and assessment of sex bias in publicly available expression data

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A deep learning framework to predict binding preference of RNA constituents on protein surface

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Construction of disease-specific cytokine profiles by associating disease genes with immune responses

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Quantifying the Severity of Adverse Drug Reactions Using Social Media: Network Analysis

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Leveraging the Cell Ontology to classify unseen cell types

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Learning the Structure of Biomedical Relationships from Unstructured Text

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Opportunities for developing therapies for rare genetic diseases: focus on gain-of-function and allostery

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Transfer learning enables prediction of CYP2D6 haplotype function

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Using multiple microenvironments to find similar ligand-binding sites: application to kinase inhibitor binding

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Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text

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Using GPT-3 to Build a Lexicon of Drugs of Abuse Synonyms for Social Media Pharmacovigilance

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Modeling drug response using network-based personalized treatment prediction (NetPTP) with applications to inflammatory bowel disease

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Challenges in the clinical application of whole-genome sequencing

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