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ArticlesPeer ReviewedFull Text
A distinct abundant group of microbial rhodopsins discovered using functional metagenomics
Author / Creator:Pushkarev, Alina ; Inoue, Keiichi ; Larom, Shirley ; Flores-Uribe, José ; Singh, Manish ; Konno, Masae ; Tomida, Sahoko ; Ito, Shota ; Nakamura, Ryoko ; Tsunoda, Satoshi P. ; Philosof, Alon ; Sharon, Itai ; Yutin, Natalya ; Koonin, Eugene V. ; Kandori, Hideki ; Béjà, Oded
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2018-06, Vol.558 (7711), p.595-599
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Seasonal and diel patterns of abundance and activity of viruses in the Red Sea
Author / Creator:Hevroni, Gur ; Flores-Uribe, José ; Béjà, Oded ; Philosof, Alon
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2020-11, Vol.117 (47), p.29738-29747
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Functional metagenomic screen reveals new and diverse microbial rhodopsins
Author / Creator:Pushkarev, Alina ; Béjà, Oded
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2016-09, Vol.10 (9), p.2331-2335
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Phototrophy by antenna-containing rhodopsin pumps in aquatic environments
Author / Creator:Chazan, Ariel ; Das, Ishita ; Fujiwara, Takayoshi ; Murakoshi, Shunya ; Rozenberg, Andrey ; Molina-Márquez, Ana ; Sano, Fumiya K. ; Tanaka, Tatsuki ; Gómez-Villegas, Patricia ; Larom, Shirley ; Pushkarev, Alina ; Malakar, Partha ; Hasegawa, Masumi ; Tsukamoto, Yuya ; Ishizuka, Tomohiro ; Konno, Masae ; Nagata, Takashi ; Mizuno, Yosuke ; Katayama, Kota ; Abe-Yoshizumi, Rei ; Ruhman, Sanford ; Inoue, Keiichi ; Kandori, Hideki ; León, Rosa ; Shihoya, Wataru ; Yoshizawa, Susumu ; Sheves, Mordechai ; Nureki, Osamu ; Béjà, Oded
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2023-03, Vol.615 (7952), p.535-540
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Adaptation to sub-optimal hosts is a driver of viral diversification in the ocean
Author / Creator:Enav, Hagay ; Kirzner, Shay ; Lindell, Debbie ; Mandel-Gutfreund, Yael ; Béjà, Oded
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-11, Vol.9 (1), p.4698-11, Article 4698
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Global abundance of microbial rhodopsins
Author / Creator:Finkel, Omri M ; Béjà, Oded ; Belkin, Shimshon
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2013-02, Vol.7 (2), p.448-451
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Nature's toolkit for microbial rhodopsin ion pumps
Author / Creator:Béjà, Oded ; Lanyi, Janos K.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2014-05, Vol.111 (18), p.6538-6539
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Crystal structure of heliorhodopsin
Author / Creator:Shihoya, Wataru ; Inoue, Keiichi ; Singh, Manish ; Konno, Masae ; Hososhima, Shoko ; Yamashita, Keitaro ; Ikeda, Kento ; Higuchi, Akimitsu ; Izume, Tamaki ; Okazaki, Sae ; Hashimoto, Masanori ; Mizutori, Ritsu ; Tomida, Sahoko ; Yamauchi, Yumeka ; Abe-Yoshizumi, Rei ; Katayama, Kota ; Tsunoda, Satoshi P. ; Shibata, Mikihiro ; Furutani, Yuji ; Pushkarev, Alina ; Béjà, Oded ; Uchihashi, Takayuki ; Kandori, Hideki ; Nureki, Osamu
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2019-10, Vol.574 (7776), p.132-136
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Proton-transporting heliorhodopsins from marine giant viruses
Author / Creator:Hososhima, Shoko ; Mizutori, Ritsu ; Abe-Yoshizumi, Rei ; Rozenberg, Andrey ; Shigemura, Shunta ; Pushkarev, Alina ; Konno, Masae ; Katayama, Kota ; Inoue, Keiichi ; Tsunoda, Satoshi P ; Béjà, Oded ; Kandori, Hideki
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2022-09, Vol.11
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Robust optogenetic inhibition with red-light-sensitive anion-conducting channelrhodopsins
Author / Creator:Oppermann, Johannes ; Rozenberg, Andrey ; Fabrin, Thomaz ; González-Cabrera, Cristian ; Parker, Rafael ; Béjà, Oded ; Prigge, Matthias ; Hegemann, Peter
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2024-10, Vol.12
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The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times
Author / Creator:DeLong, Edward F. ; Béjà, Oded
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2010-04, Vol.8 (4), p.e1000359-e1000359
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Iron-limitation light switch
Author / Creator:Béjà, Oded ; Inoue, Keiichi
Publisher:London: Nature Publishing Group UK
Journal title:Nature microbiology, 2023-11, Vol.8 (11), p.1942-1943
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Rhodopsin-mediated nutrient uptake by cultivated photoheterotrophic Verrucomicrobiota
Author / Creator:Bar-Shalom, Rinat ; Rozenberg, Andrey ; Lahyani, Matan ; Hassanzadeh, Babak ; Sahoo, Gobardhan ; Haber, Markus ; Burgsdorf, Ilia ; Tang, Xinyu ; Squatrito, Valeria ; Gomez-Consarnau, Laura ; Béjà, Oded ; Steindler, Laura
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2023-07, Vol.17 (7), p.1063-1073
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Identification of Shemin pathway genes for tetrapyrrole biosynthesis in bacteriophage sequences from aquatic environments
Author / Creator:Wegner, Helen ; Roitman, Sheila ; Kupczok, Anne ; Braun, Vanessa ; Woodhouse, Jason Nicholas ; Grossart, Hans-Peter ; Zehner, Susanne ; Béjà, Oded ; Frankenberg-Dinkel, Nicole
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-10, Vol.15 (1), p.8783-11, Article 8783
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MerMAIDs: a family of metagenomically discovered marine anion-conducting and intensely desensitizing channelrhodopsins
Author / Creator:Oppermann, Johannes ; Fischer, Paul ; Silapetere, Arita ; Liepe, Bernhard ; Rodriguez-Rozada, Silvia ; Flores-Uribe, José ; Schiewer, Enrico ; Keidel, Anke ; Vierock, Johannes ; Kaufmann, Joel ; Broser, Matthias ; Luck, Meike ; Bartl, Franz ; Hildebrandt, Peter ; Wiegert, J. Simon ; Béjà, Oded ; Hegemann, Peter ; Wietek, Jonas
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-07, Vol.10 (1), p.3315-13, Article 3315
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Rhodopsin-bestrophin fusion proteins from unicellular algae form gigantic pentameric ion channels
Author / Creator:Rozenberg, Andrey ; Kaczmarczyk, Igor ; Matzov, Donna ; Vierock, Johannes ; Nagata, Takashi ; Sugiura, Masahiro ; Katayama, Kota ; Kawasaki, Yuma ; Konno, Masae ; Nagasaka, Yujiro ; Aoyama, Mako ; Das, Ishita ; Pahima, Efrat ; Church, Jonathan ; Adam, Suliman ; Borin, Veniamin A. ; Chazan, Ariel ; Augustin, Sandra ; Wietek, Jonas ; Dine, Julien ; Peleg, Yoav ; Kawanabe, Akira ; Fujiwara, Yuichiro ; Yizhar, Ofer ; Sheves, Mordechai ; Schapiro, Igor ; Furutani, Yuji ; Kandori, Hideki ; Inoue, Keiichi ; Hegemann, Peter ; Béjà, Oded ; Shalev-Benami, Moran
Publisher:New York: Nature Publishing Group US
Journal title:Nature structural & molecular biology, 2022-06, Vol.29 (6), p.592-603
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Saccharibacteria harness light energy using type-1 rhodopsins that may rely on retinal sourced from microbial hosts
Author / Creator:Jaffe, Alexander L. ; Konno, Masae ; Kawasaki, Yuma ; Kataoka, Chihiro ; Béjà, Oded ; Kandori, Hideki ; Inoue, Keiichi ; Banfield, Jillian F.
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2022-08, Vol.16 (8), p.2056-2059
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Cyanophage tRNAs may have a role in cross-infectivity of oceanic Prochlorococcus and Synechococcus hosts
Author / Creator:Enav, Hagay ; Béjà, Oded ; Mandel-Gutfreund, Yael
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2012-03, Vol.6 (3), p.619-628
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Genomic and transcriptomic evidence of light-sensing, porphyrin biosynthesis, Calvin-Benson-Bassham cycle, and urea production in Bathyarchaeota
Author / Creator:Pan, Jie ; Zhou, Zhichao ; Béjà, Oded ; Cai, Mingwei ; Yang, Yuchun ; Liu, Yang ; Gu, Ji-Dong ; Li, Meng
Publisher:England: BioMed Central
Journal title:Microbiome, 2020-03, Vol.8 (1), p.43-12, Article 43
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Cyanophage-encoded lipid desaturases: oceanic distribution, diversity and function
Author / Creator:Roitman, Sheila ; Hornung, Ellen ; Flores-Uribe, José ; Sharon, Itai ; Feussner, Ivo ; Béjà, Oded
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2018-02, Vol.12 (2), p.343-355
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A distinct abundant group of microbial rhodopsins discovered using functional metagenomics

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Seasonal and diel patterns of abundance and activity of viruses in the Red Sea

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Functional metagenomic screen reveals new and diverse microbial rhodopsins

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Phototrophy by antenna-containing rhodopsin pumps in aquatic environments

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Adaptation to sub-optimal hosts is a driver of viral diversification in the ocean

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Global abundance of microbial rhodopsins

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Nature's toolkit for microbial rhodopsin ion pumps

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Crystal structure of heliorhodopsin

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Proton-transporting heliorhodopsins from marine giant viruses

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Robust optogenetic inhibition with red-light-sensitive anion-conducting channelrhodopsins

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The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times

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Iron-limitation light switch

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Rhodopsin-mediated nutrient uptake by cultivated photoheterotrophic Verrucomicrobiota

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Identification of Shemin pathway genes for tetrapyrrole biosynthesis in bacteriophage sequences from aquatic environments

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MerMAIDs: a family of metagenomically discovered marine anion-conducting and intensely desensitizing channelrhodopsins

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Rhodopsin-bestrophin fusion proteins from unicellular algae form gigantic pentameric ion channels

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Saccharibacteria harness light energy using type-1 rhodopsins that may rely on retinal sourced from microbial hosts

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Cyanophage tRNAs may have a role in cross-infectivity of oceanic Prochlorococcus and Synechococcus hosts

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Genomic and transcriptomic evidence of light-sensing, porphyrin biosynthesis, Calvin-Benson-Bassham cycle, and urea production in Bathyarchaeota

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Cyanophage-encoded lipid desaturases: oceanic distribution, diversity and function

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