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ArticlesPeer ReviewedFull Text
riboswitch-regulated antisense RNA in Listeria monocytogenes
Author / Creator:Mellin, J. R. ; Tiensuu, Teresa ; Bécavin, Christophe ; Gouin, Edith ; Johansson, Jörgen ; Cossart, Pascale
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-08, Vol.110 (32), p.13132-13137
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Comparative transcriptomics of pathogenic and non‐pathogenic Listeria species
Author / Creator:Wurtzel, Omri ; Sesto, Nina ; Mellin, J R ; Karunker, Iris ; Edelheit, Sarit ; Bécavin, Christophe ; Archambaud, Cristel ; Cossart, Pascale ; Sorek, Rotem
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2012-05, Vol.8 (1), p.583-n/a
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Impact of lactobacilli on orally acquired listeriosis
Author / Creator:Archambaud, Cristel ; Nahori, Marie-Anne ; Soubigou, Guillaume ; Bécavin, Christophe ; Laval, Laure ; Lechat, Pierre ; Smokvina, Tamara ; Langella, Philippe ; Lecuit, Marc ; Cossart, Pascale
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2012-10, Vol.109 (41), p.16684-16689
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Genome-wide CRISPR-dCas9 screens in E. coli identify essential genes and phage host factors
Author / Creator:Rousset, François ; Cui, Lun ; Siouve, Elise ; Becavin, Christophe ; Depardieu, Florence ; Bikard, David
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2018-11, Vol.14 (11), p.e1007749-e1007749
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Listeriomics: an Interactive Web Platform for Systems Biology of Listeria
Author / Creator:Bécavin, Christophe ; Koutero, Mikael ; Tchitchek, Nicolas ; Cerutti, Franck ; Lechat, Pierre ; Maillet, Nicolas ; Hoede, Claire ; Chiapello, Hélène ; Gaspin, Christine ; Cossart, Pascale
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2017-03, Vol.2 (2), p.e00186-16
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N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes
Author / Creator:Impens, Francis ; Rolhion, Nathalie ; Radoshevich, Lilliana ; Bécavin, Christophe ; Duval, Mélodie ; Mellin, Jeffrey ; García del Portillo, Francisco ; Pucciarelli, M. Graciela ; Williams, Allison H. ; Cossart, Pascale
Publisher:London: Nature Publishing Group UK
Journal title:Nature microbiology, 2017-02, Vol.2 (5), p.17005-17005, Article 17005
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Asymptomatic Plasmodium falciparum infection in children is associated with increased auto-antibody production, high IL-10 plasma levels and antibodies to merozoite surface protein 3
Author / Creator:Guiyedi, Vincent ; Bécavin, Christophe ; Herbert, Fabien ; Gray, Julian ; Cazenave, Pierre-André ; Kombila, Maryvonne ; Crisanti, Andrea ; Fesel, Constantin ; Pied, Sylviane
Publisher:England: BioMed Central Ltd
Journal title:Malaria journal, 2015-04, Vol.14 (1), p.162-162, Article 162
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Immunopeptidomics-based design of mRNA vaccine formulations against Listeria monocytogenes
Author / Creator:Mayer, Rupert L. ; Verbeke, Rein ; Asselman, Caroline ; Aernout, Ilke ; Gul, Adillah ; Eggermont, Denzel ; Boucher, Katie ; Thery, Fabien ; Maia, Teresa M. ; Demol, Hans ; Gabriels, Ralf ; Martens, Lennart ; Bécavin, Christophe ; De Smedt, Stefaan C. ; Vandekerckhove, Bart ; Lentacker, Ine ; Impens, Francis
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-10, Vol.13 (1), p.6075-17, Article 6075
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Single-cell gene profiling of human regulatory T cell subsets in human graft-versus-host disease
Author / Creator:Dong, Shen ; Maiella, Sylvie ; Xhaard, Aliénor ; Pang, Yuanyu ; Becavin, Christophe ; Benecke, Arndt ; Socié, Gérard ; Bianchi, Elisabetta ; Rogge, Lars
Publisher:London: BioMed Central
Journal title:Journal of translational medicine, 2011-11, Vol.9 (S2), p.P28-P28, Article P28
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Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria
Author / Creator:Cerutti, Franck ; Mallet, Ludovic ; Painset, Anaïs ; Hoede, Claire ; Moisan, Annick ; Bécavin, Christophe ; Duval, Mélodie ; Dussurget, Olivier ; Cossart, Pascale ; Gaspin, Christine ; Chiapello, Hélène
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2017-11, Vol.18 (1), p.882-882, Article 882
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Impact of the gut microbiota on the m6A epitranscriptome of mouse cecum and liver
Author / Creator:Jabs, Sabrina ; Biton, Anne ; Bécavin, Christophe ; Nahori, Marie-Anne ; Ghozlane, Amine ; Pagliuso, Alessandro ; Spanò, Giulia ; Guérineau, Vincent ; Touboul, David ; Giai Gianetto, Quentin ; Chaze, Thibault ; Matondo, Mariette ; Dillies, Marie-Agnès ; Cossart, Pascale
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-03, Vol.11 (1), p.1344-1344, Article 1344
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Evidence of IL-17, IP-10, and IL-10 involvement in multiple-organ dysfunction and IL-17 pathway in acute renal failure associated to Plasmodium falciparum malaria
Author / Creator:Herbert, Fabien ; Tchitchek, Nicolas ; Bansal, Devendra ; Jacques, Julien ; Pathak, Sulabha ; Bécavin, Christophe ; Fesel, Constantin ; Dalko, Esther ; Cazenave, Pierre-André ; Preda, Cristian ; Ravindran, Balachandran ; Sharma, Shobhona ; Das, Bidyut ; Pied, Sylviane
Publisher:England: BioMed Central Ltd
Journal title:Journal of translational medicine, 2015-11, Vol.13 (369), p.369-369, Article 369
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ArticlesPeer ReviewedFull Text
New dimensionality reduction methods for the representation of high dimensional 'omics' data
Author / Creator:Bécavin, Christophe ; Benecke, Arndt
Publisher:England: Informa Healthcare
Journal title:Expert review of molecular diagnostics, 2011-01, Vol.11 (1), p.27-34
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IgG autoantibody to brain beta tubulin III associated with cytokine cluster-II discriminate cerebral malaria in central India
Author / Creator:Bansal, Devendra ; Herbert, Fabien ; Lim, Pharath ; Deshpande, Prakash ; Bécavin, Christophe ; Guiyedi, Vincent ; de Maria, Ilaria ; Rousselle, Jean Claude ; Namane, Abdelkader ; Jain, Rajendra ; Cazenave, Pierre-André ; Mishra, Gyan Chandra ; Ferlini, Cristiano ; Fesel, Constantin ; Benecke, Arndt ; Pied, Sylviane
Publisher:United States: Public Library of Science
Journal title:PloS one, 2009-12, Vol.4 (12), p.e8245-8245
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ArticlesPeer ReviewedFull Text
Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice
Author / Creator:Tchitchek, Nicolas ; Eisfeld, Amie J ; Tisoncik-Go, Jennifer ; Josset, Laurence ; Gralinski, Lisa E ; Bécavin, Christophe ; Tilton, Susan C ; Webb-Robertson, Bobbie-Jo ; Ferris, Martin T ; Totura, Allison L ; Li, Chengjun ; Neumann, Gabriele ; Metz, Thomas O ; Smith, Richard D ; Waters, Katrina M ; Baric, Ralph ; Kawaoka, Yoshihiro ; Katze, Michael G
Publisher:England: BioMed Central Ltd
Journal title:BMC systems biology, 2013-07, Vol.7 (1), p.69-69, Article 69
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Auto-antibodies targeting brain antigens in Plasmodium falciparum infected patients as biomarkers of Cerebral Malaria
Author / Creator:Bansal, Devendra ; Herbert, Fabien ; Deshpande, Prakash ; Bécavin, Christophe ; Guiyedi, Vincent ; de Maria, Ilaria ; Cazenave, Pierre-André ; Mishra, Gyan Chandra ; Ferlini, Cristiano ; Fesel, Constantin ; Benecke, Arndt ; Pied, Sylviane
Publisher:London: BioMed Central
Journal title:Malaria journal, 2010-10, Vol.9 (S2), p.P4-P4, Article P4
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An integrated cell atlas of the lung in health and disease
Author / Creator:Sikkema, Lisa ; Ramírez-Suástegui, Ciro ; Strobl, Daniel C. ; Gillett, Tessa E. ; Zappia, Luke ; Madissoon, Elo ; Markov, Nikolay S. ; Zaragosi, Laure-Emmanuelle ; Ji, Yuge ; Ansari, Meshal ; Arguel, Marie-Jeanne ; Apperloo, Leonie ; Banchero, Martin ; Bécavin, Christophe ; Berg, Marijn ; Chichelnitskiy, Evgeny ; Chung, Mei-i ; Collin, Antoine ; Gay, Aurore C. A. ; Gote-Schniering, Janine ; Hooshiar Kashani, Baharak ; Inecik, Kemal ; Jain, Manu ; Kapellos, Theodore S. ; Kole, Tessa M. ; Leroy, Sylvie ; Mayr, Christoph H. ; Oliver, Amanda J. ; von Papen, Michael ; Peter, Lance ; Taylor, Chase J. ; Walzthoeni, Thomas ; Xu, Chuan ; Bui, Linh T. ; De Donno, Carlo ; Dony, Leander ; Faiz, Alen ; Guo, Minzhe ; Gutierrez, Austin J. ; Heumos, Lukas ; Huang, Ni ; Ibarra, Ignacio L. ; Jackson, Nathan D. ; Kadur Lakshminarasimha Murthy, Preetish ; Lotfollahi, Mohammad ; Tabib, Tracy ; Talavera-López, Carlos ; Travaglini, Kyle J. ; Wilbrey-Clark, Anna ; Worlock, Kaylee B. ; Yoshida, Masahiro ; van den Berge, Maarten ; Bossé, Yohan ; Desai, Tushar J. ; Eickelberg, Oliver ; Kaminski, Naftali ; Krasnow, Mark A. ; Lafyatis, Robert ; Nikolic, Marko Z. ; Powell, Joseph E. ; Rajagopal, Jayaraj ; Rojas, Mauricio ; Rozenblatt-Rosen, Orit ; Seibold, Max A. ; Sheppard, Dean ; Shepherd, Douglas P. ; Sin, Don D. ; Timens, Wim ; Tsankov, Alexander M. ; Whitsett, Jeffrey ; Xu, Yan ; Banovich, Nicholas E. ; Barbry, Pascal ; Duong, Thu Elizabeth ; Falk, Christine S. ; Meyer, Kerstin B. ; Kropski, Jonathan A. ; Pe’er, Dana ; Schiller, Herbert B. ; Tata, Purushothama Rao ; Schultze, Joachim L. ; Teichmann, Sara A. ; Misharin, Alexander V. ; Nawijn, Martijn C. ; Luecken, Malte D. ; Theis, Fabian J.
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2023-06, Vol.29 (6), p.1563-1577
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ArticlesPeer ReviewedFull Text
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
Author / Creator:Sungnak, Waradon ; Huang, Ni ; Bécavin, Christophe ; Berg, Marijn ; Queen, Rachel ; Litvinukova, Monika ; Talavera-López, Carlos ; Maatz, Henrike ; Reichart, Daniel ; Sampaziotis, Fotios ; Worlock, Kaylee B. ; Yoshida, Masahiro ; Barnes, Josephine L.
Publisher:New York: Nature Publishing Group US
Journal title:Nature Medicine, 2020-05, Vol.26 (5), p.681-687
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Impact of the gut microbiota on the m 6 A epitranscriptome of mouse cecum and liver
Author / Creator:Jabs, Sabrina ; Biton, Anne ; Bécavin, Christophe ; Nahori, Marie-Anne ; Ghozlane, Amine ; Pagliuso, Alessandro ; Spanò, Giulia ; Guérineau, Vincent ; Touboul, David ; Giai Gianetto, Quentin ; Chaze, Thibault ; Matondo, Mariette ; Dillies, Marie-Agnès ; Cossart, Pascale
Publisher:England: Nature Publishing Group
Journal title:Nature communications, 2020-03, Vol.11 (1), p.1344
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Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory pro...
Author / Creator:Muus, Christoph ; Luecken, Malte D ; Eraslan, Gokcen ; Heimberg, Graham ; Sikkema, Lisa ; Kobayashi, Yoshihiko ; Eeshit Dhaval Vaishnav ; Subramanian, Ayshwarya ; Smillie, Christopher ; Duong, Elizabeth Thu ; Fiskin, Evgenij ; Triglia, Elena Torlai ; Becavin, Christophe ; Ansari, Meshal ; Cai, Peiwen ; Lin, Brian ; Buchanan, Justin ; Chen, Sijia ; Shu, Jian ; Haber, Adam L ; Chung, Hattie ; Montoro, Daniel T ; Adams, Taylor ; Hananeh Aliee ; Allon, Samuel J ; Andrusivova, Zaneta ; Angelidis, Ilias ; Orr Ashenberg ; Bassler, Kevin ; Benhar, Inbal ; Bergenstrahle, Joseph ; Bergenstrahle, Ludvig ; Bolt, Liam ; Braun, Emelie ; Chaffin, Mark ; Chichelnitskiy, Evgeny ; Chiou, Joshua ; Conlon, Thomas M ; Cuoco, Michael S ; Deprez, Marie ; Fischer, David S ; Gillich, Astrid ; Gould, Joshua ; Guo, Minzhe ; Gutierrez, Austin J ; Habermann, Arun C ; Tyler, Harvey ; He, Peng ; Hou, Xiaomeng ; Jaiswal, Alok ; Jiang, Peiyong ; Kapellos, Theodoros ; Kuo, Christin S ; Larsson, Ludvig ; Leney-Greene, Michael A ; Lim, Kyungtae ; Litvinukova, Monika ; Lu, Ji ; Ludwig, Leif S ; Luo, Wendy ; Maatz, Henrike ; Lira Mamanova ; Manakongtreecheep, Kasidet ; Charles-Hugo Marquette ; Mbano, Ian ; Mcadams, Alexi M ; Metzger, Ross J ; Nabhan, Ahmad N ; Nyquist, Sarah K ; Ordovas-Montanes, Jose ; Penland, Lolita ; Poirion, Olivier B ; Poli, Segio ; Cancan Qi ; Reichart, Daniel ; Rosas, Ivan ; Schupp, Jonas ; Sinha, Rahul ; Sit, Rene V ; Slowikowski, Kamil ; Slyper, Michal ; Smith, Neal ; Sountoulidis, Alex ; Strunz, Maximilian ; Talavera-Lopez, Carlos ; Tan, Peng ; Tantivit, Jessica ; Travaglini, Kyle J ; Tucker, Nathan R ; Vernon, Katherine ; Wadsworth, Marc H ; Waldman, Julia ; Wang, Xiuting ; Yan, Wenjun ; Ali Onder Yildirim ; Zhao, William ; Ziegler, Carly G K ; Regev, Aviv ; The Nhlbi Lungmap Consortium ; The Human Cell Atlas Lung Biological Network
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-04
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riboswitch-regulated antisense RNA in Listeria monocytogenes

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Comparative transcriptomics of pathogenic and non‐pathogenic Listeria species

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Impact of lactobacilli on orally acquired listeriosis

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Genome-wide CRISPR-dCas9 screens in E. coli identify essential genes and phage host factors

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Listeriomics: an Interactive Web Platform for Systems Biology of Listeria

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N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes

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Asymptomatic Plasmodium falciparum infection in children is associated with increased auto-antibody production, high IL-10 plasma levels and antibodies to merozoite surface protein 3

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Immunopeptidomics-based design of mRNA vaccine formulations against Listeria monocytogenes

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Single-cell gene profiling of human regulatory T cell subsets in human graft-versus-host disease

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Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria

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Impact of the gut microbiota on the m6A epitranscriptome of mouse cecum and liver

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Evidence of IL-17, IP-10, and IL-10 involvement in multiple-organ dysfunction and IL-17 pathway in acute renal failure associated to Plasmodium falciparum malaria

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New dimensionality reduction methods for the representation of high dimensional 'omics' data

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IgG autoantibody to brain beta tubulin III associated with cytokine cluster-II discriminate cerebral malaria in central India

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Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice

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Auto-antibodies targeting brain antigens in Plasmodium falciparum infected patients as biomarkers of Cerebral Malaria

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An integrated cell atlas of the lung in health and disease

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SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes

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Impact of the gut microbiota on the m 6 A epitranscriptome of mouse cecum and liver

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Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory pro...

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