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ArticlesPeer ReviewedFull Text
A deep learning image-based intrinsic molecular subtype classifier of breast tumors reveals tumor heterogeneity that may affect survival
Author / Creator:Jaber, Mustafa I ; Song, Bing ; Taylor, Clive ; Vaske, Charles J ; Benz, Stephen C ; Rabizadeh, Shahrooz ; Soon-Shiong, Patrick ; Szeto, Christopher W
Publisher:England: BioMed Central Ltd
Journal title:Breast cancer research : BCR, 2020-01, Vol.22 (1), p.12-12, Article 12
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ArticlesPeer ReviewedFull Text
Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma
Author / Creator:North, Jeffrey P. ; Golovato, Justin ; Vaske, Charles J. ; Sanborn, J. Zachary ; Nguyen, Andrew ; Wu, Wei ; Goode, Benjamin ; Stevers, Meredith ; McMullen, Kevin ; Perez White, Bethany E. ; Collisson, Eric A. ; Bloomer, Michele ; Solomon, David A. ; Benz, Stephen C. ; Cho, Raymond J.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-05, Vol.9 (1), p.1894-9, Article 1894
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ArticlesPeer ReviewedFull Text
Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and dissemina...
Author / Creator:Heskett, Michael B. ; Sanborn, John Z. ; Boniface, Christopher ; Goode, Benjamin ; Chapman, Jocelyn ; Garg, Karuna ; Rabban, Joseph T. ; Zaloudek, Charles ; Benz, Stephen C. ; Spellman, Paul T. ; Solomon, David A. ; Cho, Raymond J.
Publisher:New York: Nature Publishing Group US
Journal title:Modern pathology, 2020-06, Vol.33 (6), p.1193-1206
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ArticlesPeer ReviewedFull Text
Overcoming hypoxia-induced functional suppression of NK cells
Author / Creator:Solocinski, Kristen ; Padget, Michelle R ; Fabian, Kellsye P ; Wolfson, Benjamin ; Cecchi, Fabiola ; Hembrough, Todd ; Benz, Stephen C ; Rabizadeh, Shahrooz ; Soon-Shiong, Patrick ; Schlom, Jeffrey ; Hodge, James W
Publisher:England: BMJ Publishing Group Ltd
Journal title:Journal for immunotherapy of cancer, 2020-04, Vol.8 (1), p.e000246
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ArticlesPeer ReviewedFull Text
A risk-associated Active transcriptome phenotype expressed by histologically normal human breast tissue and linked to a pro-tumorigenic adipocyte population
Author / Creator:Kang, Taekyu ; Yau, Christina ; Wong, Christopher K ; Sanborn, John Z ; Newton, Yulia ; Vaske, Charlie ; Benz, Stephen C ; Krings, Gregor ; Camarda, Roman ; Henry, Jill E ; Stuart, Josh ; Powell, Mark ; Benz, Christopher C
Publisher:London: BioMed Central Ltd
Journal title:Breast cancer research : BCR, 2020-07, Vol.22 (1), p.1-81, Article 81
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ArticlesPeer ReviewedFull Text
Identification and validation of expressed HLA-binding breast cancer neoepitopes for potential use in individualized cancer therapy
Author / Creator:Reimann, Hannah ; Nguyen, Andrew ; Sanborn, J Zachary ; Vaske, Charles J ; Benz, Stephen C ; Niazi, Kayvan ; Rabizadeh, Shahrooz ; Spilman, Patricia ; Mackensen, Andreas ; Ruebner, Matthias ; Hein, Alexander ; Beckmann, Matthias W ; van der Meijden, Edith D ; Bausenwein, Judith ; Kretschmann, Sascha ; Griffioen, Marieke ; Schlom, Jeffrey ; Gulley, James L ; Lee, Karin L ; Hamilton, Duane H ; Soon-Shiong, Patrick ; Fasching, Peter A ; Kremer, Anita N.
Publisher:England: BMJ Publishing Group Ltd
Journal title:Journal for immunotherapy of cancer, 2021-06, Vol.9 (6), p.e002605
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ArticlesPeer ReviewedFull Text
A gene signature for late distant metastasis in breast cancer identifies a potential mechanism of late recurrences
Author / Creator:Mittempergher, Lorenza ; Saghatchian, Mahasti ; Wolf, Denise M. ; Michiels, Stefan ; Canisius, Sander ; Dessen, Philippe ; Delaloge, Suzette ; Lazar, Vladimir ; Benz, Stephen C. ; Tursz, Thomas ; Bernards, René ; van't Veer, Laura J.
Publisher:United States: Elsevier B.V
Journal title:Molecular oncology, 2013-10, Vol.7 (5), p.987-999
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ArticlesPeer ReviewedFull Text
Genomic aberrations in normal tissue adjacent to HER2-amplified breast cancers: field cancerization or contaminating tumor cells?
Author / Creator:Sadanandam, Anguraj ; Lal, Aseem ; Benz, Stephen C. ; Eppenberger-Castori, Serenella ; Scott, Gary ; Gray, Joe W. ; Spellman, Paul ; Waldman, Fred ; Benz, Christopher C.
Publisher:Boston: Springer US
Journal title:Breast cancer research and treatment, 2012-12, Vol.136 (3), p.693-703
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ArticlesPeer ReviewedFull Text
Subtype and pathway specific responses to anticancer compounds in breast cancer
Author / Creator:Heiser, Laura M ; Sadanandam, Anguraj ; Kuo, Wen-Lin ; Benz, Stephen C ; Goldstein, Theodore C ; Ng, Sam ; Gibb, William J ; Wang, Nicholas J ; Ziyad, Safiyyah ; Tong, Frances ; Bayani, Nora ; Hu, Zhi ; Billig, Jessica I ; Dueregger, Andrea ; Lewis, Sophia ; Jakkula, Lakshmi ; Korkola, James E ; Durinck, Steffen ; Pepin, François ; Guan, Yinghui ; Purdom, Elizabeth ; Neuvial, Pierre ; Bengtsson, Henrik ; Wood, Kenneth W ; Smith, Peter G ; Vassilev, Lyubomir T ; Hennessy, Bryan T ; Greshock, Joel ; Bachman, Kurtis E ; Hardwicke, Mary Ann ; Park, John W ; Marton, Laurence J ; Wolf, Denise M ; Collisson, Eric A ; Neve, Richard M ; Mills, Gordon B ; Speed, Terence P ; Feiler, Heidi S ; Wooster, Richard F ; Haussler, David ; Stuart, Joshua M ; Gray, Joe W ; Spellman, Paul T
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2012-02, Vol.109 (8), p.2724-2729
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ArticlesFull Text
Deep learning-based risk stratification for HER2-negative breast cancer patients
Author / Creator:Jaber, Mustafa I ; Beziaeva, Liudmila ; Szeto, Christopher W ; Benz, Stephen C
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-05
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ArticlesPeer ReviewedFull Text
Multi-region exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and dissemin...
Author / Creator:Heskett, Michael B. ; Sanborn, John Z. ; Boniface, Christopher ; Goode, Benjamin ; Chapman, Jocelyn ; Garg, Karuna ; Rabban, Joseph T. ; Zaloudek, Charles ; Benz, Stephen C. ; Spellman, Paul T. ; Solomon, David A. ; Cho, Raymond J.
Journal title:Modern pathology, 2020-01, Vol.33 (6), p.1193-1206
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ArticlesFull Text
Multi-region exome sequencing of ovarian teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated comp...
Author / Creator:Heskett, Michael B ; Sanborn, John Z ; Boniface, Christopher ; Goode, Benjamin ; Chapman, Jocelyn ; Garg, Karuna ; Rabban, Joseph T ; Zaloudek, Charles ; Benz, Stephen C ; Spellman, Paul T ; Solomon, David A ; Cho, Raymond J
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-10
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Dissertations & ThesesFull Text
Sample-specific cancer pathway analysis using PARADIGM
Author / Creator:Benz, Stephen C
Publisher:ProQuest Dissertations & Theses
Date:2012
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A deep learning image-based intrinsic molecular subtype classifier of breast tumors reveals tumor heterogeneity that may affect survival

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Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma

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Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and dissemina...

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Overcoming hypoxia-induced functional suppression of NK cells

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A risk-associated Active transcriptome phenotype expressed by histologically normal human breast tissue and linked to a pro-tumorigenic adipocyte population

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Identification and validation of expressed HLA-binding breast cancer neoepitopes for potential use in individualized cancer therapy

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A gene signature for late distant metastasis in breast cancer identifies a potential mechanism of late recurrences

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Genomic aberrations in normal tissue adjacent to HER2-amplified breast cancers: field cancerization or contaminating tumor cells?

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Subtype and pathway specific responses to anticancer compounds in breast cancer

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Deep learning-based risk stratification for HER2-negative breast cancer patients

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Multi-region exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and dissemin...

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Multi-region exome sequencing of ovarian teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated comp...

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Sample-specific cancer pathway analysis using PARADIGM

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