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ArticlesPeer ReviewedFull Text
Biological interpretation of genome-wide association studies using predicted gene functions
Author / Creator:Pers, Tune H. ; Karjalainen, Juha M. ; Chan, Yingleong ; Westra, Harm-Jan ; Wood, Andrew R. ; Yang, Jian ; Lui, Julian C. ; Vedantam, Sailaja ; Gustafsson, Stefan ; Esko, Tonu ; Frayling, Tim ; Speliotes, Elizabeth K. ; Boehnke, Michael ; Raychaudhuri, Soumya ; Fehrmann, Rudolf S. N. ; Hirschhorn, Joel N. ; Franke, Lude
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2015-01, Vol.6 (1), p.5890-5890, Article 5890
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Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder
Author / Creator:Lim, Elaine T ; Uddin, Mohammed ; De Rubeis, Silvia ; Chan, Yingleong ; Kamumbu, Anne S ; Zhang, Xiaochang ; D'Gama, Alissa M ; Kim, Sonia N ; Hill, Robert Sean ; Goldberg, Arthur P ; Poultney, Christopher ; Minshew, Nancy J ; Kushima, Itaru ; Aleksic, Branko ; Ozaki, Norio ; Parellada, Mara ; Arango, Celso ; Penzol, Maria J ; Carracedo, Angel ; Kolevzon, Alexander ; Hultman, Christina M ; Weiss, Lauren A ; Fromer, Menachem ; Chiocchetti, Andreas G ; Freitag, Christine M ; Church, George M ; Scherer, Stephen W ; Buxbaum, Joseph D ; Walsh, Christopher A
Publisher:New York: Nature Publishing Group US
Journal title:Nature neuroscience, 2017-09, Vol.20 (9), p.1217-1224
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High-throughput creation and functional profiling of DNA sequence variant libraries using CRISPR–Cas9 in yeast
Author / Creator:Guo, Xiaoge ; Chavez, Alejandro ; Tung, Angela ; Chan, Yingleong ; Kaas, Christian ; Yin, Yi ; Cecchi, Ryan ; Garnier, Santiago Lopez ; Kelsic, Eric D ; Schubert, Max ; DiCarlo, James E ; Collins, James J ; Church, George M
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2018-07, Vol.36 (6), p.540-546
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Orgo-Seq integrates single-cell and bulk transcriptomic data to identify cell type specific-driver genes associated with autism spectrum disorder
Author / Creator:Lim, Elaine T. ; Chan, Yingleong ; Dawes, Pepper ; Guo, Xiaoge ; Erdin, Serkan ; Tai, Derek J. C. ; Liu, Songlei ; Reichert, Julia M. ; Burns, Mannix J. ; Chan, Ying Kai ; Chiang, Jessica J. ; Meyer, Katharina ; Zhang, Xiaochang ; Walsh, Christopher A. ; Yankner, Bruce A. ; Raychaudhuri, Soumya ; Hirschhorn, Joel N. ; Gusella, James F. ; Talkowski, Michael E. ; Church, George M.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-06, Vol.13 (1), p.3243-14, Article 3243
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Modeling of mitochondrial genetic polymorphisms reveals induction of heteroplasmy by pleiotropic disease locus 10398A>G
Author / Creator:Smullen, Molly ; Olson, Meagan N. ; Murray, Liam F. ; Suresh, Madhusoodhanan ; Yan, Guang ; Dawes, Pepper ; Barton, Nathaniel J. ; Mason, Jivanna N. ; Zhang, Yucheng ; Fernandez-Fontaine, Aria A. ; Church, George M. ; Mastroeni, Diego ; Wang, Qi ; Lim, Elaine T. ; Chan, Yingleong ; Readhead, Benjamin
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-06, Vol.13 (1), p.10405-10405, Article 10405
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Publisher Correction: Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder
Author / Creator:Lim, Elaine T. ; Uddin, Mohammed ; De Rubeis, Silvia ; Chan, Yingleong ; Kamumbu, Anne S. ; Zhang, Xiaochang ; D’Gama, Alissa M. ; Kim, Sonia N. ; Hill, Robert Sean ; Goldberg, Arthur P. ; Poultney, Christopher ; Minshew, Nancy J. ; Kushima, Itaru ; Aleksic, Branko ; Ozaki, Norio ; Parellada, Mara ; Arango, Celso ; Penzol, Maria J. ; Carracedo, Angel ; Kolevzon, Alexander ; Hultman, Christina M. ; Weiss, Lauren A. ; Fromer, Menachem ; Chiocchetti, Andreas G. ; Freitag, Christine M. ; Church, George M. ; Scherer, Stephen W. ; Buxbaum, Joseph D. ; Walsh, Christopher A.
Publisher:New York: Nature Publishing Group US
Journal title:Nature neuroscience, 2020-09, Vol.23 (9), p.1176-1176
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Herpes Simplex Virus 1 Infection of Human Brain Organoids and Pancreatic Stem Cell-Islets Drives Organoid-Specific Transcripts Associated with Alzheimer's Disease and Autoimmune Diseases
Author / Creator:Sundstrom, Jonathan ; Vanderleeden, Emma ; Barton, Nathaniel J ; Redick, Sambra D ; Dawes, Pepper ; Murray, Liam F ; Olson, Meagan N ; Tran, Khanh ; Chigas, Samantha M ; Orszulak, Adrian R ; Church, George M ; Readhead, Benjamin ; Oh, Hyung Suk ; Harlan, David M ; Knipe, David M ; Wang, Jennifer P ; Chan, Yingleong ; Lim, Elaine T
Publisher:Switzerland: MDPI AG
Journal title:Cells (Basel, Switzerland), 2024-11, Vol.13 (23), p.1978
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Common variants show predicted polygenic effects on height in the tails of the distribution, except in extremely short individuals
Author / Creator:Chan, Yingleong ; Holmen, Oddgeir L ; Dauber, Andrew ; Vatten, Lars ; Havulinna, Aki S ; Skorpen, Frank ; Kvaløy, Kirsti ; Silander, Kaisa ; Nguyen, Thutrang T ; Willer, Cristen ; Boehnke, Michael ; Perola, Markus ; Palotie, Aarno ; Salomaa, Veikko ; Hveem, Kristian ; Frayling, Timothy M ; Hirschhorn, Joel N ; Weedon, Michael N
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2011-12, Vol.7 (12), p.e1002439-e1002439
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Enabling multiplexed testing of pooled donor cells through whole-genome sequencing
Author / Creator:Chan, Yingleong ; Chan, Ying Kai ; Goodman, Daniel B ; Guo, Xiaoge ; Chavez, Alejandro ; Lim, Elaine T ; Church, George M
Publisher:England: BioMed Central Ltd
Journal title:Genome medicine, 2018-04, Vol.10 (1), p.31-31, Article 31
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Editorial for the Neurogenetics and Neurogenomics special issue
Author / Creator:Lim, Elaine T. ; Chan, Yingleong
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Human genetics, 2023-08, Vol.142 (8), p.997-999
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Distribution and medical impact of loss-of-function variants in the Finnish founder population
Author / Creator:Lim, Elaine T ; Würtz, Peter ; Havulinna, Aki S ; Palta, Priit ; Tukiainen, Taru ; Rehnström, Karola ; Esko, Tõnu ; Mägi, Reedik ; Inouye, Michael ; Lappalainen, Tuuli ; Chan, Yingleong ; Salem, Rany M ; Lek, Monkol ; Flannick, Jason ; Sim, Xueling ; Manning, Alisa ; Ladenvall, Claes ; Bumpstead, Suzannah ; Hämäläinen, Eija ; Aalto, Kristiina ; Maksimow, Mikael ; Salmi, Marko ; Blankenberg, Stefan ; Ardissino, Diego ; Shah, Svati ; Horne, Benjamin ; McPherson, Ruth ; Hovingh, Gerald K ; Reilly, Muredach P ; Watkins, Hugh ; Goel, Anuj ; Farrall, Martin ; Girelli, Domenico ; Reiner, Alex P ; Stitziel, Nathan O ; Kathiresan, Sekar ; Gabriel, Stacey ; Barrett, Jeffrey C ; Lehtimäki, Terho ; Laakso, Markku ; Groop, Leif ; Kaprio, Jaakko ; Perola, Markus ; McCarthy, Mark I ; Boehnke, Michael ; Altshuler, David M ; Lindgren, Cecilia M ; Hirschhorn, Joel N ; Metspalu, Andres ; Freimer, Nelson B ; Zeller, Tanja ; Jalkanen, Sirpa ; Koskinen, Seppo ; Raitakari, Olli ; Durbin, Richard ; MacArthur, Daniel G ; Salomaa, Veikko ; Ripatti, Samuli ; Daly, Mark J ; Palotie, Aarno
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2014-07, Vol.10 (7), p.e1004494-e1004494
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Basic Science and Pathogenesis
Author / Creator:Dawes, Pepper ; Barton, Nathaniel J ; Orszulak, Adrian R ; Chigas, Samantha M ; Tran, Khanh ; Sundstrom, Jonathan ; Olson, Meagan N ; Murray, Liam F ; Oh, HyungSuk ; Church, George M ; Knipe, David M ; Readhead, Benjamin ; Chan, Yingleong ; Lim, Elaine T
Publisher:United States
Journal title:Alzheimer's & dementia, 2024-12, Vol.20 Suppl 1, p.e092866
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Single‐cell spatial and non‐spatial RNA sequencing on herpes simplex virus 1 (HSV‐1) infected 2D and 3D cerebral organoids reveal molecular granularity on virus‐human gene interactions in Alzheimer’s...
Author / Creator:Dawes, Pepper ; Barton, Nathaniel J ; Orszulak, Adrian R ; Chigas, Samantha M ; Tran, Khanh ; Sundstrom, Jonathan ; Olson, Meagan N ; Murray, Liam F ; Oh, HyungSuk ; Church, George M ; Knipe, David M ; Readhead, Benjamin ; Chan, Yingleong ; Lim, Elaine T
Publisher:Hoboken: John Wiley and Sons Inc
Journal title:Alzheimer's & dementia, 2024-12, Vol.20 (S1), p.n/a
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oFlowSeq: a quantitative approach to identify protein coding mutations affecting cell type enrichment using mosaic CRISPR-Cas9 edited cerebral organoids
Author / Creator:Dawes, Pepper ; Murray, Liam F. ; Olson, Meagan N. ; Barton, Nathaniel J. ; Smullen, Molly ; Suresh, Madhusoodhanan ; Yan, Guang ; Zhang, Yucheng ; Fernandez-Fontaine, Aria ; English, Jay ; Uddin, Mohammed ; Pak, ChangHui ; Church, George M. ; Chan, Yingleong ; Lim, Elaine T.
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Human genetics, 2023-08, Vol.142 (8), p.1281-1291
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An enhanced CRISPR repressor for targeted mammalian gene regulation
Author / Creator:Yeo, Nan Cher ; Chavez, Alejandro ; Lance-Byrne, Alissa ; Chan, Yingleong ; Menn, David ; Milanova, Denitsa ; Kuo, Chih-Chung ; Guo, Xiaoge ; Sharma, Sumana ; Tung, Angela ; Cecchi, Ryan J. ; Tuttle, Marcelle ; Pradhan, Swechchha ; Lim, Elaine T. ; Davidsohn, Noah ; Ebrahimkhani, Mo R. ; Collins, James J. ; Lewis, Nathan E. ; Kiani, Samira ; Church, George M.
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2018-08, Vol.15 (8), p.611-616
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Alzheimer's disease‐associated CD83(+) microglia are linked with increased immunoglobulin G4 and human cytomegalovirus in the gut, vagal nerve, and brain
Author / Creator:Readhead, Benjamin P. ; Mastroeni, Diego F. ; Wang, Qi ; Sierra, Maria A. ; Ávila, Camila ; Jimoh, Tajudeen O. ; Haure‐Mirande, Jean‐Vianney ; Atanasoff, Kristina E. ; Nolz, Jennifer ; Suazo, Crystal ; Barton, Nathaniel J. ; Orszulak, Adrian R. ; Chigas, Samantha M. ; Tran, Khanh ; Mirza, Anne ; Ryon, Krista ; Proszynski, Jacqueline ; Najjar, Deena ; Dudley, Joel T. ; Liu, Sean T. H. ; Gandy, Sam ; Ehrlich, Michelle E. ; Alsop, Eric ; Antone, Jerry ; Reiman, Rebecca ; Funk, Cory ; Best, Rebecca L. ; Jhatro, Michael ; Kamath, Kathy ; Shon, John ; Kowalik, Timothy F. ; Bennett, David A. ; Liang, Winnie S. ; Serrano, Geidy E. ; Beach, Thomas G. ; Van Keuren‐Jensen, Kendall ; Mason, Christopher E. ; Chan, Yingleong ; Lim, Elaine T. ; Tortorella, Domenico ; Reiman, Eric M.
Publisher:United States: John Wiley and Sons Inc
Journal title:Alzheimer's & dementia, 2025-01, Vol.21 (1), p.e14401-n/a
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An unbiased index to quantify participant’s phenotypic contribution to an open-access cohort
Author / Creator:Chan, Yingleong ; Tung, Michael ; Garruss, Alexander S. ; Zaranek, Sarah W. ; Chan, Ying Kai ; Lunshof, Jeantine E. ; Zaranek, Alexander W. ; Ball, Madeleine P. ; Chou, Michael F. ; Lim, Elaine T. ; Church, George M.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-04, Vol.7 (1), p.46148-46148, Article 46148
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Rates, Distribution, and Implications of Post-zygotic Mosaic Mutations in Autism Spectrum Disorder
Author / Creator:Lim, Elaine T. ; Uddin, Mohammed ; De Rubeis, Silvia ; Chan, Yingleong ; Kamumbu, Anne S. ; Zhang, Xiaochang ; D'Gama, Alissa ; Kim, Sonia N. ; Hill, Robert Sean ; Goldberg, Arthur P. ; Poultney, Christopher ; Minshew, Nancy J. ; Kushima, Itaru ; Aleksic, Branko ; Ozaki, Norio ; Parellada, Mara ; Arango, Celso ; Penzol, Maria J. ; Carracedo, Angel ; Kolevzon, Alexander ; Hultman, Christina M. ; Weiss, Lauren A. ; Fromer, Menachem ; Chiocchetti, Andreas G. ; Freitag, Christine M. ; Church, George M. ; Scherer, Stephen W. ; Buxbaum, Joseph D. ; Walsh, Christopher A.
Journal title:Nature neuroscience, 2017-07, Vol.20 (9), p.1217-1224
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Distribution and Medical Impact of Loss-of-Function Variants in the Finnish Founder Population: e1004494
Author / Creator:Lim, Elaine T ; Würtz, Peter ; Havulinna, Aki S ; Palta, Priit ; Tukiainen, Taru ; Rehnström, Karola ; Esko, Tõnu ; Mägi, Reedik ; Inouye, Michael ; Lappalainen, Tuuli ; Chan, Yingleong ; Salem, Rany M ; Lek, Monkol ; Flannick, Jason ; Sim, Xueling ; Manning, Alisa ; Ladenvall, Claes ; Bumpstead, Suzannah ; Hämäläinen, Eija ; Aalto, Kristiina ; Maksimow, Mikael ; Salmi, Marko ; Blankenberg, Stefan ; Ardissino, Diego ; Shah, Svati ; Horne, Benjamin ; McPherson, Ruth ; Hovingh, Gerald K ; Reilly, Muredach P ; Watkins, Hugh ; Goel, Anuj ; Farrall, Martin ; Girelli, Domenico ; Reiner, Alex P ; Stitziel, Nathan O ; Kathiresan, Sekar ; Gabriel, Stacey ; Barrett, Jeffrey C ; Lehtimäki, Terho ; Laakso, Markku ; Groop, Leif ; Kaprio, Jaakko ; Perola, Markus ; McCarthy, Mark I ; Boehnke, Michael ; Altshuler, David M ; Lindgren, Cecilia M ; Hirschhorn, Joel N ; Metspalu, Andres ; Freimer, Nelson B ; Zeller, Tanja ; Jalkanen, Sirpa ; Koskinen, Seppo ; Raitakari, Olli ; Durbin, Richard ; MacArthur, Daniel G ; Salomaa, Veikko ; Ripatti, Samuli ; Daly, Mark J ; Palotie, Aarno
Publisher:San Francisco: Public Library of Science
Journal title:PLoS genetics, 2014-07, Vol.10 (7)
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ArticlesPeer ReviewedFull Text
Common Variants Show Predicted Polygenic Effects on Height in the Tails of the Distribution, Except in Extremely Short Individuals: e1002439
Author / Creator:Chan, Yingleong ; Holmen, Oddgeir L ; Dauber, Andrew ; Vatten, Lars ; Havulinna, Aki S ; Skorpen, Frank ; Kvaløy, Kirsti ; Silander, Kaisa ; Nguyen, Thutrang T ; Willer, Cristen ; Boehnke, Michael ; Perola, Markus ; Palotie, Aarno ; Salomaa, Veikko ; Hveem, Kristian ; Frayling, Timothy M ; Hirschhorn, Joel N ; Weedon, Michael N
Publisher:San Francisco: Public Library of Science
Journal title:PLoS genetics, 2011-12, Vol.7 (12)
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Biological interpretation of genome-wide association studies using predicted gene functions

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Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder

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High-throughput creation and functional profiling of DNA sequence variant libraries using CRISPR–Cas9 in yeast

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Orgo-Seq integrates single-cell and bulk transcriptomic data to identify cell type specific-driver genes associated with autism spectrum disorder

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Modeling of mitochondrial genetic polymorphisms reveals induction of heteroplasmy by pleiotropic disease locus 10398A>G

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Publisher Correction: Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder

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Herpes Simplex Virus 1 Infection of Human Brain Organoids and Pancreatic Stem Cell-Islets Drives Organoid-Specific Transcripts Associated with Alzheimer's Disease and Autoimmune Diseases

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Common variants show predicted polygenic effects on height in the tails of the distribution, except in extremely short individuals

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Enabling multiplexed testing of pooled donor cells through whole-genome sequencing

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Editorial for the Neurogenetics and Neurogenomics special issue

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Distribution and medical impact of loss-of-function variants in the Finnish founder population

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Basic Science and Pathogenesis

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Single‐cell spatial and non‐spatial RNA sequencing on herpes simplex virus 1 (HSV‐1) infected 2D and 3D cerebral organoids reveal molecular granularity on virus‐human gene interactions in Alzheimer’s...

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oFlowSeq: a quantitative approach to identify protein coding mutations affecting cell type enrichment using mosaic CRISPR-Cas9 edited cerebral organoids

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An enhanced CRISPR repressor for targeted mammalian gene regulation

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Alzheimer's disease‐associated CD83(+) microglia are linked with increased immunoglobulin G4 and human cytomegalovirus in the gut, vagal nerve, and brain

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An unbiased index to quantify participant’s phenotypic contribution to an open-access cohort

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Rates, Distribution, and Implications of Post-zygotic Mosaic Mutations in Autism Spectrum Disorder

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Distribution and Medical Impact of Loss-of-Function Variants in the Finnish Founder Population: e1004494

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Common Variants Show Predicted Polygenic Effects on Height in the Tails of the Distribution, Except in Extremely Short Individuals: e1002439

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