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GPR43 mediates microbiota metabolite SCFA regulation of antimicrobial peptide expression in intestinal epithelial cells via activation of mTOR and STAT3
Author / Creator:Zhao, Ye ; Chen, Feidi ; Wu, Wei ; Sun, Mingming ; Bilotta, Anthony J ; Yao, Suxia ; Xiao, Yi ; Huang, Xiangsheng ; Eaves-Pyles, Tonyia D ; Golovko, George ; Fofanov, Yuriy ; D'Souza, Warren ; Zhao, Qihong ; Liu, Zhanju ; Cong, Yingzi
Publisher:New York: Nature Publishing Group US
Journal title:Mucosal immunology, 2018-05, Vol.11 (3), p.752-762
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Nasopharyngeal microbiota in infants and changes during viral upper respiratory tract infection and acute otitis media
Author / Creator:Chonmaitree, Tasnee ; Jennings, Kristofer ; Golovko, Georgiy ; Khanipov, Kamil ; Pimenova, Maria ; Patel, Janak A. ; McCormick, David P. ; Loeffelholz, Michael J. ; Fofanov, Yuriy
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-07, Vol.12 (7), p.e0180630
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16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics
Author / Creator:Peterson, Christine Tara ; Sharma, Vandana ; Iablokov, Stanislav N. ; Albayrak, Levent ; Khanipov, Kamil ; Uchitel, Sasha ; Chopra, Deepak ; Mills, Paul J. ; Fofanov, Yuriy ; Rodionov, Dmitry A. ; Peterson, Scott N.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-03, Vol.14 (3), p.e0213869
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Comparative transcriptomic analysis of Rickettsia conorii during in vitro infection of human and tick host cells
Author / Creator:Narra, Hema P. ; Sahni, Abha ; Alsing, Jessica ; Schroeder, Casey L. C. ; Golovko, George ; Nia, Anna M. ; Fofanov, Yuriy ; Khanipov, Kamil ; Sahni, Sanjeev K.
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2020-09, Vol.21 (1), p.665-21, Article 665
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Viral RNA-dependent RNA polymerase mutants display an altered mutation spectrum resulting in attenuation in both mosquito and vertebrate hosts
Author / Creator:Warmbrod, K. Lane ; Patterson, Edward I. ; Kautz, Tiffany F. ; Stanton, Adam ; Rockx-Brouwer, Dedeke ; Kalveram, Birte K. ; Khanipov, Kamil ; Thangamani, Saravanan ; Fofanov, Yuriy ; Forrester, Naomi L.
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2019-04, Vol.15 (4), p.e1007610
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Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (Sus scrofa)
Author / Creator:Robeson, Michael S. ; Khanipov, Kamil ; Golovko, George ; Wisely, Samantha M. ; White, Michael D. ; Bodenchuck, Michael ; Smyser, Timothy J. ; Fofanov, Yuriy ; Fierer, Noah ; Piaggio, Antoinette J.
Publisher:England: John Wiley & Sons, Inc
Journal title:Ecology and evolution, 2018-01, Vol.8 (1), p.185-196
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S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
Author / Creator:Kalesinskas, Laurynas ; Cudone, Evan ; Fofanov, Yuriy ; Putonti, Catherine
Publisher:London, England: SAGE Publications
Journal title:Evolutionary bioinformatics online, 2018, Vol.14, p.1176934318797354-1176934318797354
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Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics
Author / Creator:Beres, Stephen B ; Carroll, Ronan K ; Shea, Patrick R ; Sitkiewicz, Izabela ; Martinez-Gutierrez, Juan Carlos ; Low, Donald E ; McGeer, Allison ; Willey, Barbara M ; Green, Karen ; Tyrrell, Gregory J ; Goldman, Thomas D ; Feldgarden, Michael ; Birren, Bruce W ; Fofanov, Yuriy ; Boos, John ; Wheaton, William D ; Honisch, Christiane ; Musser, James M
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2010-03, Vol.107 (9), p.4371-4376
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Whole Genome Sequencing of Mutation Accumulation Lines Reveals a Low Mutation Rate in the Social Amoeba Dictyostelium discoideum
Author / Creator:Saxer, Gerda ; Havlak, Paul ; Fox, Sara A. ; Quance, Michael A. ; Gupta, Sharu ; Fofanov, Yuriy ; Strassmann, Joan E. ; Queller, David C.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-10, Vol.7 (10), p.e46759
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Identification of multidimensional Boolean patterns in microbial communities
Author / Creator:Golovko, George ; Kamil, Khanipov ; Albayrak, Levent ; Nia, Anna M. ; Duarte, Renato Salomon Arroyo ; Chumakov, Sergei ; Fofanov, Yuriy
Publisher:England: BioMed Central
Journal title:Microbiome, 2020-09, Vol.8 (1), p.131-10, Article 131
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Expression Profiling of Long Noncoding RNA Splice Variants in Human Microvascular Endothelial Cells: Lipopolysaccharide Effects In Vitro
Author / Creator:Sahni, Sanjeev K. ; Patel, Jignesh ; Schroeder, Casey L. C. ; Khanipov, Kamil ; Sahni, Abha ; Narra, Hema P. ; Chowdhury, Imran H. ; Fofanov, Yuriy
Publisher:Cairo, Egypt: Hindawi Limiteds
Journal title:Mediators of Inflammation, 2017-01, Vol.2017 (2017), p.1-18
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Measuring Alphavirus Fidelity Using Non-Infectious Virus Particles
Author / Creator:Patterson, Edward I. ; Khanipov, Kamil ; Swetnam, Daniele M. ; Walsdorf, Samantha ; Kautz, Tiffany F. ; Thangamani, Saravanan ; Fofanov, Yuriy ; Forrester, Naomi L.
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2020-05, Vol.12 (5), p.546
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ArticlesPeer ReviewedFull Text
4471 Interactions of the Infant Nasopharyngeal Microbiota and Subjects’ Clinical Traits in Development of Viral Upper Respiratory Tract Infections and Acute Otitis Media
Author / Creator:Khanipov, Kamil ; Golovko, George ; Nia, Anna ; Evangelista, Lorraine ; Fofanov, Yuriy
Publisher:Cambridge: Cambridge University Press
Journal title:Journal of clinical and translational science, 2020-06, Vol.4 (s1), p.49-49
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Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa
Author / Creator:Jeffries, Claire L ; Lawrence, Gena G ; Golovko, George ; Kristan, Mojca ; Orsborne, James ; Spence, Kirstin ; Hurn, Eliot ; Bandibabone, Janvier ; Tantely, Luciano M ; Raharimalala, Fara N ; Keita, Kalil ; Camara, Denka ; Barry, Yaya ; Wat'senga, Francis ; Manzambi, Emile Z ; Afrane, Yaw A ; Mohammed, Abdul R ; Abeku, Tarekegn A ; Hedge, Shivanand ; Khanipov, Kamil ; Pimenova, Maria ; Fofanov, Yuriy ; Boyer, Sebastien ; Irish, Seth R ; Hughes, Grant L ; Walker, Thomas
Publisher:England: Wellcome Trust Limited
Journal title:Wellcome open research, 2018, Vol.3, p.113
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Secondary Analysis of the NCI-60 Whole Exome Sequencing Data Indicates Significant Presence of Propionibacterium acnes Genomic Material in Leukemia (RPMI-8226) and Central Nervous System (SF-295, SF-5...
Author / Creator:Rojas, Mark ; Golovko, Georgiy ; Khanipov, Kamil ; Albayrak, Levent ; Chumakov, Sergei ; Pettitt, B. Montgomery ; Strongin, Alex Y. ; Fofanov, Yuriy
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-06, Vol.10 (6), p.e0127799
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Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment
Author / Creator:Tucker, Don L ; Ott, C Mark ; Huff, Stephen ; Fofanov, Yuriy ; Pierson, Duane L ; Willson, Richard C ; Fox, George E
Publisher:England: BioMed Central Ltd
Journal title:BMC microbiology, 2007-03, Vol.7 (1), p.15-15, Article 15
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Janibacter Species with Evidence of Genomic Polymorphism Isolated from Resected Heart Valve in a Patient with Aortic Stenosis
Author / Creator:Malania, Lile ; Bai, Ying ; Khanipov, Kamil ; Tsereteli, Marika ; Metreveli, Mikheil ; Tsereteli, David ; Sidamonidze, Ketevan ; Imnadze, Paata ; Fofanov, Yuriy ; Kosoy, Michael
Publisher:Basel: MDPI AG
Journal title:Infectious disease reports, 2019-09, Vol.11 (2), p.8132
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Draft Genome Sequence of Zobellella denitrificans ZD1 (JCM 13380), a Salt-Tolerant Denitrifying Bacterium Capable of Producing Poly(3-Hydroxybutyrate)
Author / Creator:Yu-Wei, Wu ; Shao Yiru ; Khanipov Kamil ; Golovko Georgiy ; Pimenova, Maria ; Fofanov Yuriy ; Kung-Hui, Chu
Publisher:Washington: American Society for Microbiology
Journal title:Microbiology resource announcements, 2017-09, Vol.5 (36)
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Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation
Author / Creator:Golovko, Georgiy ; Khanipov, Kamil ; Rojas, Mark ; Martinez-Alcántara, Antonio ; Howard, Jesse J ; Ballesteros, Efren ; Gupta, Sharu ; Widger, William ; Fofanov, Yuriy
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2012-07, Vol.13 (1), p.166-166, Article 166
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ArticlesPeer ReviewedFull Text
Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa
Author / Creator:Jeffries, Claire L. ; Lawrence, Gena G. ; Golovko, George ; Kristan, Mojca ; Orsborne, James ; Spence, Kirstin ; Hurn, Eliot ; Bandibabone, Janvier ; Tantely, Luciano M. ; Raharimalala, Fara N. ; Keita, Kalil ; Camara, Denka ; Barry, Yaya ; Wat’senga, Francis ; Manzambi, Emile Z. ; Afrane, Yaw A. ; Mohammed, Abdul R. ; Abeku, Tarekegn A. ; Hedge, Shivanand ; Khanipov, Kamil ; Pimenova, Maria ; Fofanov, Yuriy ; Boyer, Sebastien ; Irish, Seth R. ; Hughes, Grant L. ; Walker, Thomas
Publisher:Wellcome
Journal title:Wellcome open research, 2018-09, Vol.3, p.113
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Access ebook if you are in the Library. Registered NSW residents may log in from home.

Showing 1 to 20 of 45 results

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GPR43 mediates microbiota metabolite SCFA regulation of antimicrobial peptide expression in intestinal epithelial cells via activation of mTOR and STAT3

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Nasopharyngeal microbiota in infants and changes during viral upper respiratory tract infection and acute otitis media

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16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics

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Comparative transcriptomic analysis of Rickettsia conorii during in vitro infection of human and tick host cells

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Viral RNA-dependent RNA polymerase mutants display an altered mutation spectrum resulting in attenuation in both mosquito and vertebrate hosts

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Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (Sus scrofa)

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S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences

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Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics

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Whole Genome Sequencing of Mutation Accumulation Lines Reveals a Low Mutation Rate in the Social Amoeba Dictyostelium discoideum

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Identification of multidimensional Boolean patterns in microbial communities

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Expression Profiling of Long Noncoding RNA Splice Variants in Human Microvascular Endothelial Cells: Lipopolysaccharide Effects In Vitro

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Measuring Alphavirus Fidelity Using Non-Infectious Virus Particles

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4471 Interactions of the Infant Nasopharyngeal Microbiota and Subjects’ Clinical Traits in Development of Viral Upper Respiratory Tract Infections and Acute Otitis Media

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Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa

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Secondary Analysis of the NCI-60 Whole Exome Sequencing Data Indicates Significant Presence of Propionibacterium acnes Genomic Material in Leukemia (RPMI-8226) and Central Nervous System (SF-295, SF-5...

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Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment

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Janibacter Species with Evidence of Genomic Polymorphism Isolated from Resected Heart Valve in a Patient with Aortic Stenosis

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Draft Genome Sequence of Zobellella denitrificans ZD1 (JCM 13380), a Salt-Tolerant Denitrifying Bacterium Capable of Producing Poly(3-Hydroxybutyrate)

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Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation

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Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa

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