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49 results for Huang,+Yuanhua

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ArticlesPeer ReviewedFull Text
Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference
Author / Creator:Huang, Yuanhua ; McCarthy, Davis J. ; Stegle, Oliver
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2019-12, Vol.20 (1), p.273-273, Article 273
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BRIE: transcriptome-wide splicing quantification in single cells
Author / Creator:Huang, Yuanhua ; Sanguinetti, Guido
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2017-06, Vol.18 (1), p.123-123, Article 123
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UniTVelo: temporally unified RNA velocity reinforces single-cell trajectory inference
Author / Creator:Gao, Mingze ; Qiao, Chen ; Huang, Yuanhua
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-11, Vol.13 (1), p.6586-11, Article 6586
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BRIE2: computational identification of splicing phenotypes from single-cell transcriptomic experiments
Author / Creator:Huang, Yuanhua ; Sanguinetti, Guido
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2021-08, Vol.22 (1), p.251-251, Article 251
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SpatialDM for rapid identification of spatially co-expressed ligand–receptor and revealing cell–cell communication patterns
Author / Creator:Li, Zhuoxuan ; Wang, Tianjie ; Liu, Pentao ; Huang, Yuanhua
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-07, Vol.14 (1), p.3995-3995, Article 3995
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CamoTSS: analysis of alternative transcription start sites for cellular phenotypes and regulatory patterns from 5' scRNA-seq data
Author / Creator:Hou, Ruiyan ; Hon, Chung-Chau ; Huang, Yuanhua
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-11, Vol.14 (1), p.7240-7240, Article 7240
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DCATS: differential composition analysis for flexible single-cell experimental designs
Author / Creator:Lin, Xinyi ; Chau, Chuen ; Ma, Kun ; Huang, Yuanhua ; Ho, Joshua W. K.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2023-06, Vol.24 (1), p.151-151, Article 151
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Multiplexed bulk and single-cell RNA-seq hybrid enables cost-efficient disease modeling with chimeric organoids
Author / Creator:Cheng, Chen ; Wang, Gang ; Zhu, Yuqing ; Wu, Hangdi ; Zhang, Li ; Liu, Zhihong ; Huang, Yuanhua ; Zhang, Jin
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-05, Vol.15 (1), p.3946-3946, Article 3946
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Author Correction: Multiplexed bulk and single-cell RNA-seq hybrid enables cost-efficient disease modeling with chimeric organoids
Author / Creator:Cheng, Chen ; Wang, Gang ; Zhu, Yuqing ; Wu, Hangdi ; Zhang, Li ; Liu, Zhihong ; Huang, Yuanhua ; Zhang, Jin
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-06, Vol.15 (1), p.4805-1, Article 4805
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Time-series single-cell transcriptomic profiling of luteal-phase endometrium uncovers dynamic characteristics and its dysregulation in recurrent implantation failures
Author / Creator:Cao, Dandan ; Liu, Yijun ; Cheng, Yanfei ; Wang, Jue ; Zhang, Bolun ; Zhai, Yanhui ; Zhu, Kongfu ; Liu, Ye ; Shang, Ye ; Xiao, Xiao ; Chang, Yi ; Lee, Yin Lau ; Yeung, William Shu Biu ; Huang, Yuanhua ; Yao, Yuanqing
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2025-01, Vol.16 (1), p.137-18, Article 137
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CRISPR/Cas9‐mediated somatic correction of a novel coagulator factor IX gene mutation ameliorates hemophilia in mouse
Author / Creator:Guan, Yuting ; Ma, Yanlin ; Li, Qi ; Sun, Zhenliang ; Ma, Lie ; Wu, Lijuan ; Wang, Liren ; Zeng, Li ; Shao, Yanjiao ; Chen, Yuting ; Ma, Ning ; Lu, Wenqing ; Hu, Kewen ; Han, Honghui ; Yu, Yanhong ; Huang, Yuanhua ; Liu, Mingyao ; Li, Dali
Publisher:London: Nature Publishing Group UK
Journal title:EMBO molecular medicine, 2016-05, Vol.8 (5), p.477-488
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MQuad enables clonal substructure discovery using single cell mitochondrial variants
Author / Creator:Kwok, Aaron Wing Cheung ; Qiao, Chen ; Huang, Rongting ; Sham, Mai-Har ; Ho, Joshua W. K. ; Huang, Yuanhua
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-03, Vol.13 (1), p.1205-1205, Article 1205
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LocusMasterTE: integrating long-read RNA sequencing improves locus-specific quantification of transposable element expression
Author / Creator:Lee, Sojung ; Barbour, Jayne A. ; Tam, Yee Man ; Yang, Haocheng ; Huang, Yuanhua ; Wong, Jason W. H.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2025-03, Vol.26 (1), p.72-72, Article 72
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StaVia: spatially and temporally aware cartography with higher-order random walks for cell atlases
Author / Creator:Stassen, Shobana V. ; Kobashi, Minato ; Lam, Edmund Y. ; Huang, Yuanhua ; Ho, Joshua W. K. ; Tsia, Kevin K.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2024-08, Vol.25 (1), p.224-224, Article 224
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Robust analysis of allele-specific copy number alterations from scRNA-seq data with XClone
Author / Creator:Huang, Rongting ; Huang, Xianjie ; Tong, Yin ; Yan, Helen Y. N. ; Leung, Suet Yi ; Stegle, Oliver ; Huang, Yuanhua
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-08, Vol.15 (1), p.6684-16, Article 6684
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Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling
Author / Creator:Barrass, J. David ; Reid, Jane E. A. ; Huang, Yuanhua ; Hector, Ralph D. ; Sanguinetti, Guido ; Beggs, Jean D. ; Granneman, Sander
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2015-12, Vol.16 (1), p.282-282, Article 282
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Genetic correction of concurrent α- and β-thalassemia patient-derived pluripotent stem cells by the CRISPR-Cas9 technology
Author / Creator:Li, Lingli ; Yi, Hongyan ; Liu, Zheng ; Long, Ping ; Pan, Tao ; Huang, Yuanhua ; Li, Yongsheng ; Li, Qi ; Ma, Yanlin
Publisher:England: BioMed Central
Journal title:Stem cell research & therapy, 2022-03, Vol.13 (1), p.102-102, Article 102
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Live Birth Sex Ratio after In Vitro Fertilization and Embryo Transfer in China - An Analysis of 121,247 Babies from 18 Centers
Author / Creator:Bu, Zhiqin ; Chen, Zi-Jiang ; Huang, Guoning ; Zhang, Hanwang ; Wu, Qiongfang ; Ma, Yanping ; Shi, Juanzi ; Xu, Yanwen ; Zhang, Songying ; Zhang, Cuilian ; Zhao, Xiaoming ; Zhang, Bo ; Huang, Yuanhua ; Sun, Zhengyi ; Kang, Yuefan ; Wu, Riran ; Wu, Xueqing ; Sun, Haixiang ; Sun, Yingpu
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-11, Vol.9 (11), p.e113522-e113522
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Organoid-based single-cell spatiotemporal gene expression landscape of human embryonic development and hematopoiesis
Author / Creator:Chao, Yiming ; Xiang, Yang ; Xiao, Jiashun ; Zheng, Weizhong ; Ebrahimkhani, Mo R. ; Yang, Can ; Wu, Angela Ruohao ; Liu, Pentao ; Huang, Yuanhua ; Sugimura, Ryohichi
Publisher:London: Nature Publishing Group UK
Journal title:Signal transduction and targeted therapy, 2023-06, Vol.8 (1), p.230-230, Article 230
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Representation learning of RNA velocity reveals robust cell transitions
Author / Creator:Qiao, Chen ; Huang, Yuanhua
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2021-12, Vol.118 (49), p.1-10
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Showing 1 to 20 of 49 results

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Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference

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BRIE: transcriptome-wide splicing quantification in single cells

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UniTVelo: temporally unified RNA velocity reinforces single-cell trajectory inference

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BRIE2: computational identification of splicing phenotypes from single-cell transcriptomic experiments

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SpatialDM for rapid identification of spatially co-expressed ligand–receptor and revealing cell–cell communication patterns

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CamoTSS: analysis of alternative transcription start sites for cellular phenotypes and regulatory patterns from 5' scRNA-seq data

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DCATS: differential composition analysis for flexible single-cell experimental designs

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Multiplexed bulk and single-cell RNA-seq hybrid enables cost-efficient disease modeling with chimeric organoids

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Author Correction: Multiplexed bulk and single-cell RNA-seq hybrid enables cost-efficient disease modeling with chimeric organoids

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Time-series single-cell transcriptomic profiling of luteal-phase endometrium uncovers dynamic characteristics and its dysregulation in recurrent implantation failures

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CRISPR/Cas9‐mediated somatic correction of a novel coagulator factor IX gene mutation ameliorates hemophilia in mouse

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MQuad enables clonal substructure discovery using single cell mitochondrial variants

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LocusMasterTE: integrating long-read RNA sequencing improves locus-specific quantification of transposable element expression

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StaVia: spatially and temporally aware cartography with higher-order random walks for cell atlases

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Robust analysis of allele-specific copy number alterations from scRNA-seq data with XClone

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Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling

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Genetic correction of concurrent α- and β-thalassemia patient-derived pluripotent stem cells by the CRISPR-Cas9 technology

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Live Birth Sex Ratio after In Vitro Fertilization and Embryo Transfer in China - An Analysis of 121,247 Babies from 18 Centers

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Organoid-based single-cell spatiotemporal gene expression landscape of human embryonic development and hematopoiesis

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Representation learning of RNA velocity reveals robust cell transitions

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