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ArticlesPeer ReviewedFull Text
Paving the way to single-molecule protein sequencing
Author / Creator:Restrepo-Pérez, Laura ; Joo, Chirlmin ; Dekker, Cees
Publisher:London: Nature Publishing Group UK
Journal title:Nature nanotechnology, 2018-09, Vol.13 (9), p.786-796
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The emerging landscape of single-molecule protein sequencing technologies
Author / Creator:Alfaro, Javier Antonio ; Bohländer, Peggy ; Dai, Mingjie ; Filius, Mike ; Howard, Cecil J. ; van Kooten, Xander F. ; Ohayon, Shilo ; Pomorski, Adam ; Schmid, Sonja ; Aksimentiev, Aleksei ; Anslyn, Eric V. ; Bedran, Georges ; Cao, Chan ; Chinappi, Mauro ; Coyaud, Etienne ; Dekker, Cees ; Dittmar, Gunnar ; Drachman, Nicholas ; Eelkema, Rienk ; Goodlett, David ; Hentz, Sébastien ; Kalathiya, Umesh ; Kelleher, Neil L. ; Kelly, Ryan T. ; Kelman, Zvi ; Kim, Sung Hyun ; Kuster, Bernhard ; Rodriguez-Larrea, David ; Lindsay, Stuart ; Maglia, Giovanni ; Marcotte, Edward M. ; Marino, John P. ; Masselon, Christophe ; Mayer, Michael ; Samaras, Patroklos ; Sarthak, Kumar ; Sepiashvili, Lusia ; Stein, Derek ; Wanunu, Meni ; Wilhelm, Mathias ; Yin, Peng ; Meller, Amit ; Joo, Chirlmin
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2021-06, Vol.18 (6), p.604-617
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ArticlesPeer ReviewedFull Text
Analysis of Single-Molecule FRET Trajectories Using Hidden Markov Modeling
Author / Creator:McKinney, Sean A. ; Joo, Chirlmin ; Ha, Taekjip
Publisher:United States: Elsevier Inc
Journal title:Biophysical journal, 2006-09, Vol.91 (5), p.1941-1951
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Single-molecule peptide fingerprinting
Author / Creator:van Ginkel, Jetty ; Filius, Mike ; Szczepaniak, Malwina ; Tulinski, Pawel ; S. Meyer, Anne ; Joo, Chirlmin ; 주철민
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2018-03, Vol.115 (13), p.3338-3343
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TRBP ensures efficient Dicer processing of precursor microRNA in RNA-crowded environments
Author / Creator:Fareh, Mohamed ; Yeom, Kyu-Hyeon ; Haagsma, Anna C. ; Chauhan, Sweeny ; Heo, Inha ; Joo, Chirlmin
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-12, Vol.7 (1), p.13694-13694, Article 13694
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FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices
Author / Creator:Lerner, Eitan ; Barth, Anders ; Hendrix, Jelle ; Ambrose, Benjamin ; Birkedal, Victoria ; Blanchard, Scott C ; Börner, Richard ; Sung Chung, Hoi ; Cordes, Thorben ; Craggs, Timothy D ; Deniz, Ashok A ; Diao, Jiajie ; Fei, Jingyi ; Gonzalez, Ruben L ; Gopich, Irina V ; Ha, Taekjip ; Hanke, Christian A ; Haran, Gilad ; Hatzakis, Nikos S ; Hohng, Sungchul ; Hong, Seok-Cheol ; Hugel, Thorsten ; Ingargiola, Antonino ; Joo, Chirlmin ; Kapanidis, Achillefs N ; Kim, Harold D ; Laurence, Ted ; Lee, Nam Ki ; Lee, Tae-Hee ; Lemke, Edward A ; Margeat, Emmanuel ; Michaelis, Jens ; Michalet, Xavier ; Myong, Sua ; Nettels, Daniel ; Peulen, Thomas-Otavio ; Ploetz, Evelyn ; Razvag, Yair ; Robb, Nicole C ; Schuler, Benjamin ; Soleimaninejad, Hamid ; Tang, Chun ; Vafabakhsh, Reza ; Lamb, Don C ; Seidel, Claus AM ; Weiss, Shimon
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2021-03, Vol.10 (na)
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mRNA structural dynamics shape Argonaute-target interactions
Author / Creator:Ruijtenberg, Suzan ; Sonneveld, Stijn ; Cui, Tao Ju ; Logister, Ive ; de Steenwinkel, Dion ; Xiao, Yao ; MacRae, Ian J. ; Joo, Chirlmin ; Tanenbaum, Marvin E.
Publisher:New York: Nature Publishing Group US
Journal title:Nature structural & molecular biology, 2020-09, Vol.27 (9), p.790-801
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Fueling protein-DNA interactions inside porous nanocontainers
Author / Creator:Cisse, Ibrahim ; Okumus, Burak ; Joo, Chirlmin ; Ha, Taekjip
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2007-07, Vol.104 (31), p.12646-12650
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Tetrameric architecture of an active phenol-bound form of the AAA+ transcriptional regulator DmpR
Author / Creator:Park, Kwang-Hyun ; Kim, Sungchul ; Lee, Su-Jin ; Cho, Jee-Eun ; Patil, Vinod Vikas ; Dumbrepatil, Arti Baban ; Song, Hyung-Nam ; Ahn, Woo-Chan ; Joo, Chirlmin ; Lee, Seung-Goo ; Shingler, Victoria ; Woo, Eui-Jeon
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-06, Vol.11 (1), p.2728-2728, Article 2728
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RNA-guided RNA silencing by an Asgard archaeal Argonaute
Author / Creator:Bastiaanssen, Carolien ; Bobadilla Ugarte, Pilar ; Kim, Kijun ; Finocchio, Giada ; Feng, Yanlei ; Anzelon, Todd A. ; Köstlbacher, Stephan ; Tamarit, Daniel ; Ettema, Thijs J. G. ; Jinek, Martin ; MacRae, Ian J. ; Joo, Chirlmin ; Swarts, Daan C. ; Wu, Fabai
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-06, Vol.15 (1), p.5499-14, Article 5499
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A single vesicle-vesicle fusion assay for in vitro studies of SNAREs and accessory proteins
Author / Creator:Diao, Jiajie ; Ishitsuka, Yuji ; Lee, Hanki ; Joo, Chirlmin ; Su, Zengliu ; Syed, Salman ; Shin, Yeon-Kyun ; Yoon, Tae-Young ; Ha, Taekjip
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2012-05, Vol.7 (5), p.921-934
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Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets
Author / Creator:Schirle, Nicole T ; Sheu-Gruttadauria, Jessica ; Chandradoss, Stanley D ; Joo, Chirlmin ; MacRae, Ian J
Publisher:England: eLife Sciences Publications, Ltd
Journal title:eLife, 2015-09, Vol.4
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Distinct mechanisms regulating mechanical force-induced Ca2+ signals at the plasma membrane and the ER in human MSCs
Author / Creator:Kim, Tae-Jin ; Joo, Chirlmin ; Seong, Jihye ; Vafabakhsh, Reza ; Botvinick, Elliot L ; Berns, Michael W ; Palmer, Amy E ; Wang, Ning ; Ha, Taekjip ; Jakobsson, Eric ; Sun, Jie ; Wang, Yingxiao
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2015-02, Vol.4, p.e04876-e04876
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ArticlesPeer ReviewedFull Text
Dynamic Growth and Shrinkage Govern the pH Dependence of RecA Filament Stability
Author / Creator:Kim, Sung Hyun ; Park, Jeehae ; Joo, Chirlmin ; Kim, Doseok ; Ha, Taekjip
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-01, Vol.10 (1), p.e0115611-e0115611
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Author Correction: mRNA structural dynamics shape Argonaute-target interactions
Author / Creator:Ruijtenberg, Suzan ; Sonneveld, Stijn ; Cui, Tao Ju ; Logister, Ive ; de Steenwinkel, Dion ; Xiao, Yao ; MacRae, Ian J. ; Joo, Chirlmin ; Tanenbaum, Marvin E.
Publisher:New York: Nature Publishing Group US
Journal title:Nature structural & molecular biology, 2021-06, Vol.28 (6), p.533-533
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Argonaute bypasses cellular obstacles without hindrance during target search
Author / Creator:Cui, Tao Ju ; Klein, Misha ; Hegge, Jorrit W. ; Chandradoss, Stanley D. ; van der Oost, John ; Depken, Martin ; Joo, Chirlmin
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-09, Vol.10 (1), p.4390-11, Article 4390
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Selective loading and processing of prespacers for precise CRISPR adaptation
Author / Creator:Kim, Sungchul ; Loeff, Luuk ; Colombo, Sabina ; Jergic, Slobodan ; Brouns, Stan J. J. ; Joo, Chirlmin
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2020-03, Vol.579 (7797), p.141-145
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Full-length single-molecule protein fingerprinting
Author / Creator:Filius, Mike ; van Wee, Raman ; de Lannoy, Carlos ; Westerlaken, Ilja ; Li, Zeshi ; Kim, Sung Hyun ; de Agrela Pinto, Cecilia ; Wu, Yunfei ; Boons, Geert-Jan ; Pabst, Martin ; de Ridder, Dick ; Joo, Chirlmin
Publisher:London: Nature Publishing Group UK
Journal title:Nature nanotechnology, 2024-05, Vol.19 (5), p.652-659
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Single-Molecule Three-Color FRET
Author / Creator:Hohng, Sungchul ; Joo, Chirlmin ; Ha, Taekjip
Publisher:United States: Elsevier Inc
Journal title:Biophysical journal, 2004-08, Vol.87 (2), p.1328-1337
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Single-molecule approach to immunoprecipitated protein complexes: insights into miRNA uridylation
Author / Creator:Yeom, Kyu-Hyeon ; Heo, Inha ; Lee, Jinwoo ; Hohng, Sungchul ; Kim, V Narry ; Joo, Chirlmin
Publisher:Chichester, UK: John Wiley & Sons, Ltd
Journal title:EMBO reports, 2011-07, Vol.12 (7), p.690-696
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Showing 1 to 20 of 38 results

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Paving the way to single-molecule protein sequencing

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The emerging landscape of single-molecule protein sequencing technologies

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Analysis of Single-Molecule FRET Trajectories Using Hidden Markov Modeling

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Single-molecule peptide fingerprinting

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TRBP ensures efficient Dicer processing of precursor microRNA in RNA-crowded environments

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FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices

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mRNA structural dynamics shape Argonaute-target interactions

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Fueling protein-DNA interactions inside porous nanocontainers

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Tetrameric architecture of an active phenol-bound form of the AAA+ transcriptional regulator DmpR

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RNA-guided RNA silencing by an Asgard archaeal Argonaute

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A single vesicle-vesicle fusion assay for in vitro studies of SNAREs and accessory proteins

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Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets

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Distinct mechanisms regulating mechanical force-induced Ca2+ signals at the plasma membrane and the ER in human MSCs

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Dynamic Growth and Shrinkage Govern the pH Dependence of RecA Filament Stability

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Author Correction: mRNA structural dynamics shape Argonaute-target interactions

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Argonaute bypasses cellular obstacles without hindrance during target search

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Selective loading and processing of prespacers for precise CRISPR adaptation

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Full-length single-molecule protein fingerprinting

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Single-Molecule Three-Color FRET

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Single-molecule approach to immunoprecipitated protein complexes: insights into miRNA uridylation

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