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QuPath: Open source software for digital pathology image analysis
Author / Creator:Bankhead, Peter ; Loughrey, Maurice B. ; Fernández, José A. ; Dombrowski, Yvonne ; McArt, Darragh G. ; Dunne, Philip D. ; McQuaid, Stephen ; Gray, Ronan T. ; Murray, Liam J. ; Coleman, Helen G. ; James, Jacqueline A. ; Salto-Tellez, Manuel ; Hamilton, Peter W.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-12, Vol.7 (1), p.16878-7, Article 16878
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Impact of COVID-19 on acute appendicitis presentation, management and pathology findings in adult and paediatric populations
Author / Creator:Johnston, Dorothy B ; Coleman, Helen G ; Colvin, David ; Lawther, Suzanne ; Loughrey, Maurice B
Publisher:United States: Public Library of Science
Journal title:PloS one, 2024-04, Vol.19 (4), p.e0300357-e0300357
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British Society of Gastroenterology/Association of Coloproctologists of Great Britain and Ireland guidelines for the management of large non-pedunculated colorectal polyps
Author / Creator:Rutter, Matthew D ; Chattree, Amit ; Barbour, Jamie A ; Thomas-Gibson, Siwan ; Bhandari, Pradeep ; Saunders, Brian P ; Veitch, Andrew M ; Anderson, John ; Rembacken, Bjorn J ; Loughrey, Maurice B ; Pullan, Rupert ; Garrett, William V ; Lewis, Gethin ; Dolwani, Sunil
Publisher:England: BMJ Publishing Group LTD
Journal title:Gut, 2015-12, Vol.64 (12), p.1847-1873
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Integrated tumor identification and automated scoring minimizes pathologist involvement and provides new insights to key biomarkers in breast cancer
Author / Creator:Bankhead, Peter ; Fernández, José A ; McArt, Darragh G ; Boyle, David P ; Li, Gerald ; Loughrey, Maurice B ; Irwin, Gareth W ; Harkin, D Paul ; James, Jacqueline A ; McQuaid, Stephen ; Salto-Tellez, Manuel ; Hamilton, Peter W
Publisher:New York: Elsevier Inc
Journal title:Laboratory investigation, 2018-01, Vol.98 (1), p.15-26
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Molecular profiling of signet ring cell colorectal cancer provides a strong rationale for genomic targeted and immune checkpoint inhibitor therapies
Author / Creator:Alvi, Muhammad A ; Loughrey, Maurice B ; Dunne, Philip ; McQuaid, Stephen ; Turkington, Richard ; Fuchs, Marc-Aurel ; McGready, Claire ; Bingham, Victoria ; Pang, Brendan ; Moore, Wendy ; Maxwell, Perry ; Lawler, Mark ; James, Jacqueline A ; Murray, Graeme I ; Wilson, Richard H ; Salto-Tellez, Manuel
Publisher:London: Nature Publishing Group UK
Journal title:British journal of cancer, 2017-07, Vol.117 (2), p.203-209
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Microscopic pathology assessment of colorectal polyp size is less accurate than intracolonoscopic assessment
Author / Creator:Loughrey, Maurice B
Publisher:London: BMJ Publishing Group LTD
Journal title:Gut, 2024-12, p.gutjnl-2024-332206
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Orthogonal MET analysis in a population‐representative stage II–III colon cancer cohort: prognostic and potential therapeutic implications
Author / Creator:Craig, Stephanie G. ; Mende, Svenja ; Humphries, Matthew P. ; Bingham, Victoria ; Viratham Pulsawatdi, Amélie ; Loughrey, Maurice B. ; Coleman, Helen G. ; McQuaid, Stephen ; Wilson, Richard H. ; Van Schaeybroeck, Sandra ; James, Jacqueline A. ; Salto‐Tellez, Manuel
Publisher:United States: John Wiley & Sons, Inc
Journal title:Molecular oncology, 2021-12, Vol.15 (12), p.3317-3328
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Evolutionary genetic algorithm identifies IL2RB as a potential predictive biomarker for immune-checkpoint therapy in colorectal cancer
Author / Creator:Alderdice, Matthew ; Craig, Stephanie G ; Humphries, Matthew P ; Gilmore, Alan ; Johnston, Nicole ; Bingham, Victoria ; Coyle, Vicky ; Senevirathne, Seedevi ; Longley, Daniel B ; Loughrey, Maurice B ; McQuaid, Stephen ; James, Jacqueline A ; Salto-Tellez, Manuel ; Lawler, Mark ; McArt, Darragh G
Publisher:England: Oxford University Press
Journal title:NAR genomics and bioinformatics, 2021-06, Vol.3 (2), p.lqab016-lqab016
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Evaluation of PTGS2 Expression, PIK3CA Mutation, Aspirin Use and Colon Cancer Survival in a Population-Based Cohort Study
Author / Creator:Gray, Ronan T ; Cantwell, Marie M ; Coleman, Helen G ; Loughrey, Maurice B ; Bankhead, Peter ; McQuaid, Stephen ; O'Neill, Roisin F ; Arthur, Kenneth ; Bingham, Victoria ; McGready, Claire ; Gavin, Anna T ; Cardwell, Chris R ; Johnston, Brian T ; James, Jacqueline A ; Hamilton, Peter W ; Salto-Tellez, Manuel ; Murray, Liam J
Publisher:United States: Wolters Kluwer Health Medical Research, Lippincott Williams & Wilkins
Journal title:Clinical and translational gastroenterology, 2017-04, Vol.8 (4), p.e91-e91
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ArticlesPeer ReviewedFull Text
Swarm learning for decentralized artificial intelligence in cancer histopathology
Author / Creator:Saldanha, Oliver Lester ; Quirke, Philip ; West, Nicholas P. ; James, Jacqueline A. ; Loughrey, Maurice B. ; Grabsch, Heike I. ; Salto-Tellez, Manuel ; Alwers, Elizabeth ; Cifci, Didem ; Ghaffari Laleh, Narmin ; Seibel, Tobias ; Gray, Richard ; Hutchins, Gordon G. A. ; Brenner, Hermann ; van Treeck, Marko ; Yuan, Tanwei ; Brinker, Titus J. ; Chang-Claude, Jenny ; Khader, Firas ; Schuppert, Andreas ; Luedde, Tom ; Trautwein, Christian ; Muti, Hannah Sophie ; Foersch, Sebastian ; Hoffmeister, Michael ; Truhn, Daniel ; Kather, Jakob Nikolas
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2022-06, Vol.28 (6), p.1232-1239
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Inequalities in the decline and recovery of pathological cancer diagnoses during the first six months of the COVID-19 pandemic: a population-based study
Author / Creator:Hamilton, Ashleigh C. ; Donnelly, David W. ; Loughrey, Maurice B. ; Turkington, Richard C. ; Fox, Colin ; Fitzpatrick, Deirdre ; O’Neill, Ciaran E. ; Gavin, Anna T. ; Coleman, Helen G.
Publisher:London: Nature Publishing Group UK
Journal title:British journal of cancer, 2021-09, Vol.125 (6), p.798-805
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ArticlesPeer ReviewedFull Text
Immune status is prognostic for poor survival in colorectal cancer patients and is associated with tumour hypoxia
Author / Creator:Craig, Stephanie G. ; Humphries, Matthew P. ; Alderdice, Matthew ; Bingham, Victoria ; Richman, Susan D. ; Loughrey, Maurice B. ; Coleman, Helen G. ; Viratham-Pulsawatdi, Amelie ; McCombe, Kris ; Murray, Graeme I. ; Blake, Andrew ; Domingo, Enric ; Robineau, James ; Brown, Louise ; Fisher, David ; Seymour, Matthew T. ; Quirke, Phil ; Bankhead, Peter ; McQuaid, Stephen ; Lawler, Mark ; McArt, Darragh G. ; Maughan, Tim S. ; James, Jacqueline A. ; Salto-Tellez, Manuel
Publisher:London: Nature Publishing Group UK
Journal title:British journal of cancer, 2020-10, Vol.123 (8), p.1280-1288
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Clinical utility of GI pathology data: implications for practising pathologists
Author / Creator:Loughrey, Maurice B ; Wong, Newton A C S
Publisher:London: BMJ Publishing Group Ltd and Association of Clinical Pathologists
Journal title:Journal of clinical pathology, 2022-08, Vol.75 (8), p.519-524
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Comment on “Identification of EMT-related high-risk stage II colorectal cancer and characterisation of metastasis-related genes”
Author / Creator:Loughrey, Maurice B. ; Fisher, Natalie C. ; McCooey, Aoife J. ; Dunne, Philip D.
Publisher:London: Nature Publishing Group UK
Journal title:British journal of cancer, 2021-03, Vol.124 (6), p.1175-1176
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Evaluating the impact of 2020 post-polypectomy surveillance guidelines in the Northern Ireland bowel cancer screening programme
Author / Creator:Loughrey, Maurice B ; Ings, Grace ; Dickey, William ; Owen, Tracy A ; Coleman, Helen G
Publisher:England: BMJ Publishing Group Ltd and British Society of Gastroenterology
Journal title:Gut, 2021-01, Vol.70 (1), p.226-228
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Exploiting differential Wnt target gene expression to generate a molecular biomarker for colorectal cancer stratification
Author / Creator:Kleeman, Sam O ; Koelzer, Viktor H ; Jones, Helen JS ; Vazquez, Ester Gil ; Davis, Hayley ; East, James E ; Arnold, Roland ; Koppens, Martijn AJ ; Blake, Andrew ; Domingo, Enric ; Cunningham, Chris ; Beggs, Andrew D ; Pestinger, Valerie ; Loughrey, Maurice B ; Wang, Lai-Mun ; Lannagan, Tamsin RM ; Woods, Susan L ; Worthley, Daniel ; Tomlinson, Ian ; Dunne, Philip D ; Maughan, Timothy ; Leedham, Simon J
Publisher:England: BMJ Publishing Group Ltd and British Society of Gastroenterology
Journal title:Gut, 2020-06, Vol.69 (6), p.1092-1103
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Improving tumor budding reporting in colorectal cancer: a Delphi consensus study
Author / Creator:Haddad, Tariq Sami ; Lugli, Alessandro ; Aherne, Susan ; Barresi, Valeria ; Terris, Benoît ; Bokhorst, John-Melle ; Brockmoeller, Scarlet Fiona ; Cuatrecasas, Miriam ; Simmer, Femke ; El-Zimaity, Hala ; Fléjou, Jean-François ; Gibbons, David ; Cathomas, Gieri ; Kirsch, Richard ; Kuhlmann, Tine Plato ; Langner, Cord ; Loughrey, Maurice B. ; Riddell, Robert ; Ristimäki, Ari ; Kakar, Sanjay ; Sheahan, Kieran ; Treanor, Darren ; van der Laak, Jeroen ; Vieth, Michael ; Zlobec, Inti ; Nagtegaal, Iris D.
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Virchows Archiv : an international journal of pathology, 2021-09, Vol.479 (3), p.459-469
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Pathway level subtyping identifies a slow-cycling biological phenotype associated with poor clinical outcomes in colorectal cancer
Author / Creator:Malla, Sudhir B. ; Byrne, Ryan M. ; Lafarge, Maxime W. ; Corry, Shania M. ; Fisher, Natalie C. ; Tsantoulis, Petros K. ; Mills, Megan L. ; Ridgway, Rachel A. ; Lannagan, Tamsin R. M. ; Najumudeen, Arafath K. ; Gilroy, Kathryn L. ; Amirkhah, Raheleh ; Maguire, Sarah L. ; Mulholland, Eoghan J. ; Belnoue-Davis, Hayley L. ; Grassi, Elena ; Viviani, Marco ; Rogan, Emily ; Redmond, Keara L. ; Sakhnevych, Svetlana ; McCooey, Aoife J. ; Bull, Courtney ; Hoey, Emily ; Sinevici, Nicoleta ; Hall, Holly ; Ahmaderaghi, Baharak ; Domingo, Enric ; Blake, Andrew ; Richman, Susan D. ; Isella, Claudio ; Miller, Crispin ; Bertotti, Andrea ; Trusolino, Livio ; Loughrey, Maurice B. ; Kerr, Emma M. ; Tejpar, Sabine ; Maughan, Timothy S. ; Lawler, Mark ; Campbell, Andrew D. ; Leedham, Simon J. ; Koelzer, Viktor H. ; Sansom, Owen J. ; Dunne, Philip D.
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2024-03, Vol.56 (3), p.458-472
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Stratification of chemotherapy-treated stage III colorectal cancer patients using multiplexed imaging and single-cell analysis of T-cell populations
Author / Creator:Stachtea, Xanthi ; Loughrey, Maurice B. ; Salvucci, Manuela ; Lindner, Andreas U. ; Cho, Sanghee ; McDonough, Elizabeth ; Sood, Anup ; Graf, John ; Santamaria-Pang, Alberto ; Corwin, Alex ; Laurent-Puig, Pierre ; Dasgupta, Sonali ; Shia, Jinru ; Owens, Jonathan R. ; Abate, Samantha ; Van Schaeybroeck, Sandra ; Lawler, Mark ; Prehn, Jochen H. M. ; Ginty, Fiona ; Longley, Daniel B.
Publisher:New York: Nature Publishing Group US
Journal title:Modern pathology, 2022-04, Vol.35 (4), p.564-576
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Statin use, candidate mevalonate pathway biomarkers, and colon cancer survival in a population-based cohort study
Author / Creator:Gray, Ronan T ; Loughrey, Maurice B ; Bankhead, Peter ; Cardwell, Chris R ; McQuaid, Stephen ; O'Neill, Roisin F ; Arthur, Kenneth ; Bingham, Victoria ; McGready, Claire ; Gavin, Anna T ; James, Jacqueline A ; Hamilton, Peter W ; Salto-Tellez, Manuel ; Murray, Liam J ; Coleman, Helen G
Publisher:London: Nature Publishing Group UK
Journal title:British journal of cancer, 2017-06, Vol.116 (12), p.1652-1659
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QuPath: Open source software for digital pathology image analysis

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Impact of COVID-19 on acute appendicitis presentation, management and pathology findings in adult and paediatric populations

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British Society of Gastroenterology/Association of Coloproctologists of Great Britain and Ireland guidelines for the management of large non-pedunculated colorectal polyps

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Integrated tumor identification and automated scoring minimizes pathologist involvement and provides new insights to key biomarkers in breast cancer

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Molecular profiling of signet ring cell colorectal cancer provides a strong rationale for genomic targeted and immune checkpoint inhibitor therapies

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Microscopic pathology assessment of colorectal polyp size is less accurate than intracolonoscopic assessment

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Orthogonal MET analysis in a population‐representative stage II–III colon cancer cohort: prognostic and potential therapeutic implications

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Evolutionary genetic algorithm identifies IL2RB as a potential predictive biomarker for immune-checkpoint therapy in colorectal cancer

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Evaluation of PTGS2 Expression, PIK3CA Mutation, Aspirin Use and Colon Cancer Survival in a Population-Based Cohort Study

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Swarm learning for decentralized artificial intelligence in cancer histopathology

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Inequalities in the decline and recovery of pathological cancer diagnoses during the first six months of the COVID-19 pandemic: a population-based study

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Immune status is prognostic for poor survival in colorectal cancer patients and is associated with tumour hypoxia

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Clinical utility of GI pathology data: implications for practising pathologists

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Comment on “Identification of EMT-related high-risk stage II colorectal cancer and characterisation of metastasis-related genes”

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Evaluating the impact of 2020 post-polypectomy surveillance guidelines in the Northern Ireland bowel cancer screening programme

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Exploiting differential Wnt target gene expression to generate a molecular biomarker for colorectal cancer stratification

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Improving tumor budding reporting in colorectal cancer: a Delphi consensus study

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Pathway level subtyping identifies a slow-cycling biological phenotype associated with poor clinical outcomes in colorectal cancer

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Stratification of chemotherapy-treated stage III colorectal cancer patients using multiplexed imaging and single-cell analysis of T-cell populations

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Statin use, candidate mevalonate pathway biomarkers, and colon cancer survival in a population-based cohort study

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