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ArticlesPeer ReviewedFull Text
iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections
Author / Creator:Janky, Rekin's ; Verfaillie, Annelien ; Imrichová, Hana ; Van de Sande, Bram ; Standaert, Laura ; Christiaens, Valerie ; Hulselmans, Gert ; Herten, Koen ; Naval Sanchez, Marina ; Potier, Delphine ; Svetlichnyy, Dmitry ; Kalender Atak, Zeynep ; Fiers, Mark ; Marine, Jean-Christophe ; Aerts, Stein
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2014-07, Vol.10 (7), p.e1003731-e1003731
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Evolution of Sex Determination Loci in Atlantic Salmon
Author / Creator:Kijas, James ; McWilliam, Sean ; Naval Sanchez, Marina ; Kube, Peter ; King, Harry ; Evans, Bradley ; Nome, Torfinn ; Lien, Sigbjørn ; Verbyla, Klara
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2018-04, Vol.8 (1), p.5664-11, Article 5664
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Robust Target Gene Discovery through Transcriptome Perturbations and Genome-Wide Enhancer Predictions in Drosophila Uncovers a Regulatory Basis for Sensory Specification
Author / Creator:Aerts, Stein ; Quan, Xiao-Jiang ; Claeys, Annelies ; Naval Sanchez, Marina ; Tate, Phillip ; Yan, Jiekun ; Hassan, Bassem A.
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2010-07, Vol.8 (7), p.e1000435-e1000435
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Nicotinamide riboside attenuates age-associated metabolic and functional changes in hematopoietic stem cells
Author / Creator:Sun, Xuan ; Cao, Benjamin ; Naval-Sanchez, Marina ; Pham, Tony ; Sun, Yu Bo Yang ; Williams, Brenda ; Heazlewood, Shen Y. ; Deshpande, Nikita ; Li, Jinhua ; Kraus, Felix ; Rae, James ; Nguyen, Quan ; Yari, Hamed ; Schröder, Jan ; Heazlewood, Chad K. ; Fulton, Madeline ; Hatwell-Humble, Jessica ; Das Gupta, Kaustav ; Kapetanovic, Ronan ; Chen, Xiaoli ; Sweet, Matthew J. ; Parton, Robert G. ; Ryan, Michael T. ; Polo, Jose M. ; Nefzger, Christian M. ; Nilsson, Susan K.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-05, Vol.12 (1), p.2665-17, Article 2665
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Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds
Author / Creator:Naval-Sanchez, Marina ; Nguyen, Quan ; McWilliam, Sean ; Porto-Neto, Laercio R. ; Tellam, Ross ; Vuocolo, Tony ; Reverter, Antonio ; Perez-Enciso, Miguel ; Brauning, Rudiger ; Clarke, Shannon ; McCulloch, Alan ; Zamani, Wahid ; Naderi, Saeid ; Rezaei, Hamid Reza ; Pompanon, Francois ; Taberlet, Pierre ; Worley, Kim C. ; Gibbs, Richard A. ; Muzny, Donna M. ; Jhangiani, Shalini N. ; Cockett, Noelle ; Daetwyler, Hans ; Kijas, James
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-02, Vol.9 (1), p.859-13, Article 859
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Leveraging transcriptome and epigenome landscapes to infer regulatory networks during the onset of sexual maturation
Author / Creator:Mohamed, Amin R. ; Naval-Sanchez, Marina ; Menzies, Moira ; Evans, Bradley ; King, Harry ; Reverter, Antonio ; Kijas, James W.
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2022-06, Vol.23 (1), p.413-413, Article 413
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Chromatin accessibility and regulatory vocabulary across indicine cattle tissues
Author / Creator:Alexandre, Pâmela A. ; Naval-Sánchez, Marina ; Menzies, Moira ; Nguyen, Loan T. ; Porto-Neto, Laercio R. ; Fortes, Marina R. S. ; Reverter, Antonio
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2021-09, Vol.22 (1), p.273-273, Article 273
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Micrococcal nuclease sequencing of porcine sperm suggests enriched co-location between retained histones and genomic regions related to semen quality and early embryo development
Author / Creator:Gòdia, Marta ; Lian, Yu ; Naval-Sanchez, Marina ; Ponte, Inma ; Rodríguez-Gil, Joan Enric ; Sanchez, Armand ; Clop, Alex
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2023-06, Vol.11, p.e15520-e15520, Article e15520
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Nuclear receptors connect progenitor transcription factors to cell cycle control
Author / Creator:Neto, Marta ; Naval-Sánchez, Marina ; Potier, Delphine ; Pereira, Paulo S. ; Geerts, Dirk ; Aerts, Stein ; Casares, Fernando
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-07, Vol.7 (1), p.4845-17, Article 4845
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Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein–Uhlenbeck Models
Author / Creator:Naval-Sánchez, Marina ; Potier, Delphine ; Hulselmans, Gert ; Christiaens, Valerie ; Aerts, Stein
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2015-09, Vol.32 (9), p.2441-2455
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RAPID COMMUNICATION: A haplotype information theory method reveals genes of evolutionary interest in European vs. Asian pigs
Author / Creator:Hudson, Nicholas J ; Naval-Sánchez, Marina ; Porto-Neto, Laercio ; Pérez-Enciso, Miguel ; Reverter, Antonio
Publisher:United States: Oxford University Press
Journal title:Journal of animal science, 2018-08, Vol.96 (8), p.3064-3069
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Selection signatures in tropical cattle are enriched for promoter and coding regions and reveal missense mutations in the damage response gene HELB
Author / Creator:Naval-Sánchez, Marina ; Porto-Neto, Laercio R. ; Cardoso, Diercles F. ; Hayes, Ben J. ; Daetwyler, Hans D. ; Kijas, James ; Reverter, Antonio
Publisher:France: BioMed Central Ltd
Journal title:Genetics selection evolution (Paris), 2020-05, Vol.52 (1), p.27-27, Article 27
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ArticlesPeer ReviewedFull Text
Association analysis of loci implied in “buffering” epistasis
Author / Creator:Reverter, Antonio ; Vitezica, Zulma G ; Naval-Sánchez, Marina ; Henshall, John ; Raidan, Fernanda S S ; Li, Yutao ; Meyer, Karin ; Hudson, Nicholas J ; Porto-Neto, Laercio R ; Legarra, Andrés
Publisher:US: Oxford University Press
Journal title:Journal of animal science, 2020-03, Vol.98 (3), p.1-11
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Genome-Wide Co-Expression Distributions as a Metric to Prioritize Genes of Functional Importance
Author / Creator:Alexandre, Pâmela A. ; Hudson, Nicholas J. ; Lehnert, Sigrid A. ; Fortes, Marina R. S. ; Naval-Sánchez, Marina ; Nguyen, Loan T. ; Porto-Neto, Laercio R. ; Reverter, Antonio
Publisher:Basel: MDPI AG
Journal title:Genes, 2020-10, Vol.11 (10), p.1231
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Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae
Author / Creator:Allais-Bonnet, Aurélie ; Hintermann, Aurélie ; Deloche, Marie-Christine ; Cornette, Raphaël ; Bardou, Philippe ; Naval-Sanchez, Marina ; Pinton, Alain ; Haruda, Ashleigh ; Grohs, Cécile ; Zakany, Jozsef ; Bigi, Daniele ; Medugorac, Ivica ; Putelat, Olivier ; Greyvenstein, Ockert ; Hadfield, Tracy ; Jemaa, Slim Ben ; Bunevski, Gjoko ; Menzi, Fiona ; Hirter, Nathalie ; Paris, Julia M ; Hedges, John ; Palhiere, Isabelle ; Rupp, Rachel ; Lenstra, Johannes A ; Gidney, Louisa ; Lesur, Joséphine ; Schafberg, Renate ; Stache, Michael ; Wandhammer, Marie-Dominique ; Arbogast, Rose-Marie ; Guintard, Claude ; Blin, Amandine ; Boukadiri, Abdelhak ; Rivière, Julie ; Esquerré, Diane ; Donnadieu, Cécile ; Danchin-Burge, Coralie ; Reich, Coralie M ; Riley, David G ; Marle-Koster, Este van ; Cockett, Noelle ; Hayes, Benjamin J ; Drögemüller, Cord ; Kijas, James ; Pailhoux, Eric ; Tosser-Klopp, Gwenola ; Duboule, Denis ; Capitan, Aurélien
Publisher:United States: Oxford University Press
Journal title:Molecular biology and evolution, 2021-06, Vol.38 (6), p.2260-2272
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ArticlesPeer ReviewedFull Text
iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections: e1003731
Author / Creator:Janky, s ; Verfaillie, Annelien ; Imrichová, Hana ; Sande, Bram Vande ; Standaert, Laura ; Christiaens, Valerie ; Hulselmans, Gert ; Herten, Koen ; Sanchez, Marina Naval ; Potier, Delphine ; Svetlichnyy, Dmitry ; Atak, Zeynep Kalender ; Fiers, Mark ; Marine, Jean-Christophe ; Aerts, Stein
Publisher:San Francisco: Public Library of Science
Journal title:PLoS computational biology, 2014-07, Vol.10 (7)
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ArticlesPeer ReviewedFull Text
Robust Target Gene Discovery through Transcriptome Perturbations and Genome-Wide Enhancer Predictions in Drosophila Uncovers a Regulatory Basis for Sensory Specification: e1000435
Author / Creator:Aerts, Stein ; Quan, Xiao-Jiang ; Claeys, Annelies ; Sanchez, Marina Naval ; Tate, Phillip ; Yan, Jiekun ; Hassan, Bassem A
Publisher:San Francisco: Public Library of Science
Journal title:PLoS biology, 2010-07, Vol.8 (7)
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ArticlesPeer ReviewedFull Text
Rapid Communication: A haplotype information theory method reveals genes of evolutionary interest in European vs. Asian pigs 1
Author / Creator:Hudson, Nicholas J ; Naval-Sánchez, Marina ; Porto-Neto, Laercio ; Pérez-Enciso, Miguel ; Reverter, Antonio
Publisher:Champaign: Oxford University Press
Journal title:Journal of animal science, 2018-08, Vol.96 (8), p.3064-3069
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ArticlesPeer ReviewedFull Text
RAPID COMMUNICATION: A haplotype information theory method reveals genes of evolutionary interest in European vs. Asian pigs1
Author / Creator:Hudson, Nicholas J ; Naval-Sánchez, Marina ; Porto-Neto, Laercio ; Pérez-Enciso, Miguel ; Reverter, Antonio
Publisher:US: Oxford University Press
Journal title:Journal of animal science, 2018-07, Vol.96 (8), p.3064-3069
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ArticlesFull Text
Micrococcal nuclease sequencing of porcine sperm suggests a nucleosomal involvement on semen quality and early embryo development
Author / Creator:Gòdia, Marta ; Hammoud, Saher Sue ; Naval-Sánchez, Marina ; Ponte, Inma ; Rodríguez-Gil, Joan Enric ; Sánchez, Armand ; Clop, Alex
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-03
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Showing 1 to 20 of 25 results

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iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

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Evolution of Sex Determination Loci in Atlantic Salmon

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Robust Target Gene Discovery through Transcriptome Perturbations and Genome-Wide Enhancer Predictions in Drosophila Uncovers a Regulatory Basis for Sensory Specification

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Nicotinamide riboside attenuates age-associated metabolic and functional changes in hematopoietic stem cells

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Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds

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Leveraging transcriptome and epigenome landscapes to infer regulatory networks during the onset of sexual maturation

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Chromatin accessibility and regulatory vocabulary across indicine cattle tissues

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Micrococcal nuclease sequencing of porcine sperm suggests enriched co-location between retained histones and genomic regions related to semen quality and early embryo development

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Nuclear receptors connect progenitor transcription factors to cell cycle control

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Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein–Uhlenbeck Models

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RAPID COMMUNICATION: A haplotype information theory method reveals genes of evolutionary interest in European vs. Asian pigs

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Selection signatures in tropical cattle are enriched for promoter and coding regions and reveal missense mutations in the damage response gene HELB

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Association analysis of loci implied in “buffering” epistasis

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Genome-Wide Co-Expression Distributions as a Metric to Prioritize Genes of Functional Importance

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Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae

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iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections: e1003731

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Robust Target Gene Discovery through Transcriptome Perturbations and Genome-Wide Enhancer Predictions in Drosophila Uncovers a Regulatory Basis for Sensory Specification: e1000435

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Rapid Communication: A haplotype information theory method reveals genes of evolutionary interest in European vs. Asian pigs 1

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RAPID COMMUNICATION: A haplotype information theory method reveals genes of evolutionary interest in European vs. Asian pigs1

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Micrococcal nuclease sequencing of porcine sperm suggests a nucleosomal involvement on semen quality and early embryo development

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