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ArticlesPeer ReviewedFull Text
The Role of the Aryl Hydrocarbon Receptor (AHR) in Immune and Inflammatory Diseases
Author / Creator:Neavin, Drew R ; Liu, Duan ; Ray, Balmiki ; Weinshilboum, Richard M
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2018-12, Vol.19 (12), p.3851
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Pitfalls and opportunities for applying latent variables in single-cell eQTL analyses
Author / Creator:Xue, Angli ; Yazar, Seyhan ; Neavin, Drew ; Powell, Joseph E
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2023-02, Vol.24 (1), p.33-33, Article 33
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ERICH3: vesicular association and antidepressant treatment response
Author / Creator:Liu, Duan ; Zhuang, Yongxian ; Zhang, Lingxin ; Gao, Huanyao ; Neavin, Drew ; Carrillo-Roa, Tania ; Wang, Yani ; Yu, Jia ; Qin, Sisi ; Kim, Daniel C. ; Liu, Erica ; Nguyen, Thanh Thanh Le ; Biernacka, Joanna M. ; Kaddurah-Daouk, Rima ; Dunlop, Boadie W. ; Craighead, W. Edward ; Mayberg, Helen S. ; Binder, Elisabeth B. ; Frye, Mark A. ; Wang, Liewei ; Weinshilboum, Richard M.
Publisher:London: Nature Publishing Group UK
Journal title:Molecular psychiatry, 2021-06, Vol.26 (6), p.2415-2428
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A village in a dish model system for population-scale hiPSC studies
Author / Creator:Neavin, Drew R. ; Steinmann, Angela M. ; Farbehi, Nona ; Chiu, Han Sheng ; Daniszewski, Maciej S. ; Arora, Himanshi ; Bermudez, Yasmin ; Moutinho, Cátia ; Chan, Chia-Ling ; Bax, Monique ; Tyebally, Mubarika ; Gnanasambandapillai, Vikkitharan ; Lam, Chuan E. ; Nguyen, Uyen ; Hernández, Damián ; Lidgerwood, Grace E. ; Graham, Robert M. ; Hewitt, Alex W. ; Pébay, Alice ; Palpant, Nathan J. ; Powell, Joseph E.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-06, Vol.14 (1), p.3240-12, Article 3240
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Single cell eQTL analysis identifies cell type-specific genetic control of gene expression in fibroblasts and reprogrammed induced pluripotent stem cells
Author / Creator:Neavin, Drew ; Nguyen, Quan ; Daniszewski, Maciej S ; Liang, Helena H ; Chiu, Han Sheng ; Wee, Yong Kiat ; Senabouth, Anne ; Lukowski, Samuel W ; Crombie, Duncan E ; Lidgerwood, Grace E ; Hernández, Damián ; Vickers, James C ; Cook, Anthony L ; Palpant, Nathan J ; Pébay, Alice ; Hewitt, Alex W ; Powell, Joseph E
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2021-03, Vol.22 (1), p.76-76, Article 76
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ArticlesPeer ReviewedFull Text
Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods
Author / Creator:Neavin, Drew ; Senabouth, Anne ; Arora, Himanshi ; Lee, Jimmy Tsz Hang ; Ripoll-Cladellas, Aida ; Franke, Lude ; Prabhakar, Shyam ; Ye, Chun Jimmie ; McCarthy, Davis J ; Melé, Marta ; Hemberg, Martin ; Powell, Joseph E
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2024-04, Vol.25 (1), p.94-94, Article 94
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Prediction of short-term antidepressant response using probabilistic graphical models with replication across multiple drugs and treatment settings
Author / Creator:Athreya, Arjun P ; Brückl, Tanja ; Binder, Elisabeth B ; John Rush, A ; Biernacka, Joanna ; Frye, Mark A ; Neavin, Drew ; Skime, Michelle ; Monrad, Ditlev ; Iyer, Ravishankar K ; Mayes, Taryn ; Trivedi, Madhukar ; Carter, Rickey E ; Wang, Liewei ; Weinshilboum, Richard M ; Croarkin, Paul E ; Bobo, William V
Publisher:England: Nature Publishing Group
Journal title:Neuropsychopharmacology (New York, N.Y.), 2021-06, Vol.46 (7), p.1272-1282
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Alterations in acylcarnitines, amines, and lipids inform about the mechanism of action of citalopram/escitalopram in major depression
Author / Creator:MahmoudianDehkordi, Siamak ; Ahmed, Ahmed T. ; Bhattacharyya, Sudeepa ; Han, Xianlin ; Baillie, Rebecca A. ; Arnold, Matthias ; Skime, Michelle K. ; John-Williams, Lisa St ; Moseley, M. Arthur ; Thompson, J. Will ; Louie, Gregory ; Riva-Posse, Patricio ; Craighead, W. Edward ; McDonald, William ; Krishnan, Ranga ; Rush, A. John ; Frye, Mark A. ; Dunlop, Boadie W. ; Weinshilboum, Richard M. ; Kaddurah-Daouk, Rima
Publisher:London: Nature Publishing Group UK
Journal title:Translational psychiatry, 2021-03, Vol.11 (1), p.153-14, Article 153
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ArticlesPeer ReviewedFull Text
Metabolomic signature of exposure and response to citalopram/escitalopram in depressed outpatients
Author / Creator:Bhattacharyya, Sudeepa ; Ahmed, Ahmed T. ; Arnold, Matthias ; Liu, Duan ; Luo, Chunqiao ; Zhu, Hongjie ; Mahmoudiandehkordi, Siamak ; Neavin, Drew ; Louie, Gregory ; Dunlop, Boadie W. ; Frye, Mark A. ; Wang, Liewei ; Weinshilboum, Richard M. ; Krishnan, Ranga R. ; Rush, A. John ; Kaddurah-Daouk, Rima
Publisher:London: Nature Publishing Group UK
Journal title:Translational psychiatry, 2019-07, Vol.9 (1), p.173-14, Article 173
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ArticlesPeer ReviewedFull Text
Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics
Author / Creator:Liu, Duan ; Ray, Balmiki ; Neavin, Drew R. ; Zhang, Jiabin ; Athreya, Arjun P. ; Biernacka, Joanna M. ; Bobo, William V. ; Hall-Flavin, Daniel K. ; Skime, Michelle K. ; Zhu, Hongjie ; Jenkins, Gregory D. ; Batzler, Anthony ; Kalari, Krishna R. ; Boakye-Agyeman, Felix ; Matson, Wayne R. ; Bhasin, Swati S. ; Mushiroda, Taisei ; Nakamura, Yusuke ; Kubo, Michiaki ; Iyer, Ravishankar K. ; Wang, Liewei ; Frye, Mark A. ; Kaddurah-Daouk, Rima ; Weinshilboum, Richard M.
Publisher:London: Nature Publishing Group UK
Journal title:Translational psychiatry, 2018-01, Vol.8 (1), p.10-10, Article 10
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ArticlesPeer ReviewedFull Text
Treatment of Major Depressive Disorder in Pediatric Populations
Author / Creator:Neavin, Drew R ; Joyce, Jeremiah ; Swintak, Cosima
Publisher:Switzerland: MDPI AG
Journal title:Diseases, 2018-06, Vol.6 (2), p.48
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Pharmacometabolomics informs pharmacogenomics
Author / Creator:Neavin, Drew ; Kaddurah-Daouk, Rima ; Weinshilboum, Richard
Publisher:New York: Springer US
Journal title:Metabolomics, 2016-07, Vol.12 (7), p.1, Article 121
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Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration
Author / Creator:Senabouth, Anne ; Daniszewski, Maciej ; Lidgerwood, Grace E. ; Liang, Helena H. ; Hernández, Damián ; Mirzaei, Mehdi ; Keenan, Stacey N. ; Zhang, Ran ; Han, Xikun ; Neavin, Drew ; Rooney, Louise ; Lopez Sanchez, Maria Isabel G. ; Gulluyan, Lerna ; Paulo, Joao A. ; Clarke, Linda ; Kearns, Lisa S. ; Gnanasambandapillai, Vikkitharan ; Chan, Chia-Ling ; Nguyen, Uyen ; Steinmann, Angela M. ; McCloy, Rachael A. ; Farbehi, Nona ; Gupta, Vivek K. ; Mackey, David A. ; Bylsma, Guy ; Verma, Nitin ; MacGregor, Stuart ; Watt, Matthew J. ; Guymer, Robyn H. ; Powell, Joseph E. ; Hewitt, Alex W. ; Pébay, Alice
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-07, Vol.13 (1), p.4233-18, Article 4233
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Deep sequencing of proteotoxicity modifier genes uncovers a Presenilin-2/beta-amyloid-actin genetic risk module shared among alpha-synucleinopathies
Author / Creator:Nazeen, Sumaiya ; Wang, Xinyuan ; Zielinski, Dina ; Lam, Isabel ; Hallacli, Erinc ; Xu, Ping ; Ethier, Elizabeth ; Strom, Ronya ; Zanella, Camila A ; Nithianandam, Vanitha ; Ritter, Dylan ; Henderson, Alexander ; Saurat, Nathalie ; Jalwa Afroz ; Nutter-Upham, Andrew ; Benyamini, Hadar ; Copty, Joseph ; Ravishankar, Shyamsundar ; Morrow, Autumn ; Mitchel, Jonathan ; Neavin, Drew ; Gupta, Renuka ; Farbehi, Nona ; Grundman, Jennifer ; Myers, Richard H ; Scherzer, Clemens R ; Trojanowski, John Q ; Van Deerlin, Vivianna M ; Cooper, Antony A ; Lee, Edward B ; Erlich, Yaniv ; Lindquist, Susan ; Peng, Jian ; Geschwind, Daniel H ; Powell, Joseph ; Studer, Lorenz ; Feany, Mel B ; Sunyaev, Shamil R ; Khurana, Vikram
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2024-03
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Demuxafy: Improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods
Author / Creator:Neavin, Drew ; Senabouth, Anne ; Lee, Jimmy ; Ripoll, Aida ; Franke, Lude ; Prabhakar, Shyam ; Ye, Chun ; Mccarthy, Davis ; Mele, Marta ; Hemberg, Martin ; Powell, Joseph
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-03
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Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration
Author / Creator:Senabouth, Anne ; Daniszewski, Maciej ; Lidgerwood, Grace E ; Liang, Helena H ; Hernández, Damián ; Mirzaei, Mehdi ; Zhang, Ran ; Han, Xikun ; Neavin, Drew ; Rooney, Louise ; Isabel Lopez Sanchez ; Gulluyan, Lerna ; Paulo, Joao A ; Clarke, Linda ; Kearns, Lisa S ; Gnanasambandapillai, Vikkitharan ; Chan, Chia-Ling ; Nguyen, Uyen ; Steinmann, Angela M ; Zekanovic, Rachael ; Farbehi, Nona ; Gupta, Vivek K ; Mackey, David A ; Bylsma, Guy ; Verma, Nitin ; Macgregor, Stuart ; Guymer, Robyn H ; Powell, Joseph E ; Hewitt, Alex W ; Pébay, Alice
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-08
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Acylcarnitine Metabolomic Profiles Inform Clinically-Defined Major Depressive Phenotypes
Author / Creator:Ahmed, Ahmed T ; Mahmoudiandehkordi, Siamak ; Bhattacharyya, Sudeepa ; Arnold, Matthias ; Liu, Duan ; Neavin, Drew ; Moseley, M Arthur ; J Will Thompson ; St John Williams, Lisa ; Louie, Gregory ; Skime, Michelle K ; Wang, Liewei ; Riva-Posse, Patricio ; Mcdonald, William ; Bobo, William V ; Craighead, W Edward ; Krishnan, Ranga ; Weinshilboum, Richard M ; Dunlop, Boadie W ; Millington, David S ; Rush, A John ; Frye, Mark A ; The Mood Disorders Precision Medicine Consortium ; Kaddurah-Daouk, Rima
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-05
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The Role of the Aryl Hydrocarbon Receptor (AHR) in Immune and Inflammatory Diseases

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Pitfalls and opportunities for applying latent variables in single-cell eQTL analyses

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ERICH3: vesicular association and antidepressant treatment response

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A village in a dish model system for population-scale hiPSC studies

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Single cell eQTL analysis identifies cell type-specific genetic control of gene expression in fibroblasts and reprogrammed induced pluripotent stem cells

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Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods

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Prediction of short-term antidepressant response using probabilistic graphical models with replication across multiple drugs and treatment settings

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Alterations in acylcarnitines, amines, and lipids inform about the mechanism of action of citalopram/escitalopram in major depression

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Metabolomic signature of exposure and response to citalopram/escitalopram in depressed outpatients

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Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics

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Treatment of Major Depressive Disorder in Pediatric Populations

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Pharmacometabolomics informs pharmacogenomics

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Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration

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Deep sequencing of proteotoxicity modifier genes uncovers a Presenilin-2/beta-amyloid-actin genetic risk module shared among alpha-synucleinopathies

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Demuxafy: Improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods

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Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration

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Acylcarnitine Metabolomic Profiles Inform Clinically-Defined Major Depressive Phenotypes

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