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ArticlesPeer ReviewedFull Text
Exploring the Trade-Off in the Variational Information Bottleneck for Regression with a Single Training Run
Author / Creator:Kudo, Sota ; Ono, Naoaki ; Kanaya, Shigehiko ; Huang, Ming
Publisher:Switzerland: MDPI AG
Journal title:Entropy (Basel, Switzerland), 2024-11, Vol.26 (12), p.1043
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Classification of ischemia from myocardial polar maps in 15O–H2O cardiac perfusion imaging using a convolutional neural network
Author / Creator:Teuho, Jarmo ; Schultz, Jussi ; Klén, Riku ; Knuuti, Juhani ; Saraste, Antti ; Ono, Naoaki ; Kanaya, Shigehiko
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2022-02, Vol.12 (1), p.2839-2839, Article 2839
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Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress
Author / Creator:Horinouchi, Takaaki ; Tamaoka, Kuniyasu ; Furusawa, Chikara ; Ono, Naoaki ; Suzuki, Shingo ; Hirasawa, Takashi ; Yomo, Tetsuya ; Shimizu, Hiroshi
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2010-10, Vol.11 (1), p.579-579, Article 579
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Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks
Author / Creator:Eguchi, Ryohei ; Ono, Naoaki ; Hirai Morita, Aki ; Katsuragi, Tetsuo ; Nakamura, Satoshi ; Huang, Ming ; Altaf-Ul-Amin, Md ; Kanaya, Shigehiko
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2019-07, Vol.20 (1), p.380-380, Article 380
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Divergence of metabolites in three phylogenetically close Monascus species (M. pilosus, M. ruber, and M. purpureus) based on secondary metabolite biosynthetic gene clusters
Author / Creator:Higa, Yuki ; Kim, Young-Soo ; Altaf-Ul-Amin, Md ; Huang, Ming ; Ono, Naoaki ; Kanaya, Shigehiko
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2020-10, Vol.21 (1), p.679-679, Article 679
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Investigating Potential Anti-Bacterial Natural Products Based on Ayurvedic Formulae Using Supervised Network Analysis and Machine Learning Approaches
Author / Creator:Gao, Pei ; Nasution, Ahmad Kamal ; Ono, Naoaki ; Kanaya, Shigehiko ; Altaf-Ul-Amin, Md
Publisher:Switzerland: MDPI AG
Journal title:Pharmaceuticals (Basel, Switzerland), 2025-01, Vol.18 (2), p.192
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Discovering natural products as potential inhibitors of SARS-CoV-2 spike proteins
Author / Creator:Alqaaf, Muhammad ; Nasution, Ahmad Kamal ; Karim, Mohammad Bozlul ; Rumman, Mahfujul Islam ; Sedayu, Muhammad Hendrick ; Supriyanti, Retno ; Ono, Naoaki ; Altaf-Ul-Amin, Md ; Kanaya, Shigehiko
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2025-01, Vol.15 (1), p.200-19, Article 200
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A system biology approach based on metabolic biomarkers and protein–protein interactions for identifying pathways underlying schizophrenia and bipolar disorder
Author / Creator:Altaf-Ul-Amin, Md ; Hirose, Kazuhisa ; Nani, João V. ; Porta, Lucas C. ; Tasic, Ljubica ; Hossain, Shaikh Farhad ; Huang, Ming ; Ono, Naoaki ; Hayashi, Mirian A. F. ; Kanaya, Shigehiko
Publisher:London: Springer Science and Business Media LLC
Journal title:Scientific Reports, 2021-07, Vol.11 (1), p.14450-11, Article 14450
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An integrative network-based approach to identify novel disease genes and pathways: a case study in the context of inflammatory bowel disease
Author / Creator:Eguchi, Ryohei ; Karim, Mohammand Bozlul ; Hu, Pingzhao ; Sato, Tetsuo ; Ono, Naoaki ; Kanaya, Shigehiko ; Altaf-Ul-Amin, Md
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2018-07, Vol.19 (1), p.264-264, Article 264
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Drug Repurposing for Non-Alcoholic Fatty Liver Disease by Analyzing Networks Among Drugs, Diseases, and Genes
Author / Creator:Altaf-Ul-Amin, Md ; Nasution, Ahmad Kamal ; Islam, Rumman Mahfujul ; Gao, Pei ; Ono, Naoaki ; Kanaya, Shigehiko
Publisher:Switzerland: MDPI AG
Journal title:Metabolites, 2025-04, Vol.15 (4), p.255
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Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach
Author / Creator:Altaf-Ul-Amin, Md ; Karim, Mohammad Bozlul ; Hu, Pingzhao ; ONO, Naoaki ; Kanaya, Shigehiko
Publisher:England: BioMed Central Ltd
Journal title:BMC medical genomics, 2020-02, Vol.13 (S3), p.10-10, Article 10
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A Novel CNN-Based Framework for Classification of Signal Quality and Sleep Position from a Capacitive ECG Measurement
Author / Creator:Kido, Koshiro ; Tamura, Toshiyo ; Ono, Naoaki ; Altaf-Ul-Amin, MD ; Sekine, Masaki ; Kanaya, Shigehiko ; Huang, Ming
Publisher:Switzerland: MDPI AG
Journal title:Sensors (Basel, Switzerland), 2019-04, Vol.19 (7), p.1731
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Analysis of Chemical Properties of Edible and Medicinal Ginger by Metabolomics Approach
Author / Creator:Ono, Naoaki ; Sakurai, Hiroaki ; Arita, Masanori ; Tanaka, Ken ; Tezuka, Yasuhiro
Publisher:Cairo, Egypt: Hindawi Publishing Corporation
Journal title:BioMed Research International, 2015-01, Vol.2015 (2015), p.1-7
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Comparison of Sequence Reads Obtained from Three Next-Generation Sequencing Platforms
Author / Creator:Suzuki, Shingo ; Ono, Naoaki ; Furusawa, Chikara ; Ying, Bei-Wen ; Yomo, Tetsuya
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-05, Vol.6 (5), p.e19534
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Design of Fragrance Formulations with Antiviral Activity Using Bayesian Optimization
Author / Creator:Zhang, Fan ; Hirama, Yui ; Onishi, Shintaro ; Mori, Takuya ; Ono, Naoaki ; Kanaya, Shigehiko
Publisher:Switzerland: MDPI AG
Journal title:Microorganisms (Basel), 2024-07, Vol.12 (8), p.1568
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Recent Trends in Computational Biomedical Research
Author / Creator:Altaf-Ul-Amin, Md ; Kanaya, Shigehiko ; Ono, Naoaki ; Huang, Ming
Publisher:Switzerland: MDPI AG
Journal title:Life (Basel, Switzerland), 2021-12, Vol.12 (1), p.27
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Quantitative evaluation model of variable diagnosis for chest X-ray images using deep learning
Author / Creator:Nakagawa, Shota ; Ono, Naoaki ; Hakamata, Yukichika ; Ishii, Takashi ; Saito, Akira ; Yanagimoto, Shintaro ; Kanaya, Shigehiko
Publisher:United States: Public Library of Science
Journal title:PLOS digital health, 2024-03, Vol.3 (3), p.e0000460-e0000460
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Identifying Potential Natural Antibiotics from Unani Formulas through Machine Learning Approaches
Author / Creator:Nasution, Ahmad Kamal ; Alqaaf, Muhammad ; Islam, Rumman Mahfujul ; Wijaya, Sony Hartono ; Ono, Naoaki ; Kanaya, Shigehiko ; Altaf-Ul-Amin, Md
Publisher:Switzerland: MDPI AG
Journal title:Antibiotics (Basel), 2024-10, Vol.13 (10), p.971
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Cooperative Adaptation to Establishment of a Synthetic Bacterial Mutualism
Author / Creator:Hosoda, Kazufumi ; Suzuki, Shingo ; Yamauchi, Yoshinori ; Shiroguchi, Yasunori ; Kashiwagi, Akiko ; Ono, Naoaki ; Mori, Kotaro ; Yomo, Tetsuya
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-02, Vol.6 (2), p.e17105-e17105
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Deep Learning Approach for Predicting the Therapeutic Usages of Unani Formulas towards Finding Essential Compounds
Author / Creator:Wijaya, Sony Hartono ; Nasution, Ahmad Kamal ; Batubara, Irmanida ; Gao, Pei ; Huang, Ming ; Ono, Naoaki ; Kanaya, Shigehiko ; Altaf-Ul-Amin, Md
Publisher:Switzerland: MDPI AG
Journal title:Life, 2023-02, Vol.13 (2), p.439
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Showing 1 to 20 of 54 results

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Exploring the Trade-Off in the Variational Information Bottleneck for Regression with a Single Training Run

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Classification of ischemia from myocardial polar maps in 15O–H2O cardiac perfusion imaging using a convolutional neural network

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Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

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Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks

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Divergence of metabolites in three phylogenetically close Monascus species (M. pilosus, M. ruber, and M. purpureus) based on secondary metabolite biosynthetic gene clusters

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Investigating Potential Anti-Bacterial Natural Products Based on Ayurvedic Formulae Using Supervised Network Analysis and Machine Learning Approaches

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Discovering natural products as potential inhibitors of SARS-CoV-2 spike proteins

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A system biology approach based on metabolic biomarkers and protein–protein interactions for identifying pathways underlying schizophrenia and bipolar disorder

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An integrative network-based approach to identify novel disease genes and pathways: a case study in the context of inflammatory bowel disease

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Drug Repurposing for Non-Alcoholic Fatty Liver Disease by Analyzing Networks Among Drugs, Diseases, and Genes

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Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach

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A Novel CNN-Based Framework for Classification of Signal Quality and Sleep Position from a Capacitive ECG Measurement

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Analysis of Chemical Properties of Edible and Medicinal Ginger by Metabolomics Approach

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Comparison of Sequence Reads Obtained from Three Next-Generation Sequencing Platforms

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Design of Fragrance Formulations with Antiviral Activity Using Bayesian Optimization

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Recent Trends in Computational Biomedical Research

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Quantitative evaluation model of variable diagnosis for chest X-ray images using deep learning

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Identifying Potential Natural Antibiotics from Unani Formulas through Machine Learning Approaches

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Cooperative Adaptation to Establishment of a Synthetic Bacterial Mutualism

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Deep Learning Approach for Predicting the Therapeutic Usages of Unani Formulas towards Finding Essential Compounds

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