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ArticlesPeer ReviewedFull Text
Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity
Author / Creator:Chang, Matthew T ; Asthana, Saurabh ; Gao, Sizhi Paul ; Lee, Byron H ; Chapman, Jocelyn S ; Kandoth, Cyriac ; Gao, JianJiong ; Socci, Nicholas D ; Solit, David B ; Olshen, Adam B ; Schultz, Nikolaus ; Taylor, Barry S
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2016-02, Vol.34 (2), p.155-163
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Integrative Subtype Discovery in Glioblastoma Using iCluster
Author / Creator:Shen, Ronglai ; Mo, Qianxing ; Schultz, Nikolaus ; Seshan, Venkatraman E. ; Olshen, Adam B. ; Huse, Jason ; Ladanyi, Marc ; Sander, Chris
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-04, Vol.7 (4), p.e35236-e35236
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Pattern discovery and cancer gene identification in integrated cancer genomic data
Author / Creator:Mo, Qianxing ; Wang, Sijian ; Seshan, Venkatraman E. ; Olshen, Adam B. ; Schultz, Nikolaus ; Sander, Chris ; Powers, R. Scott ; Ladanyi, Marc ; Shen, Ronglai
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-03, Vol.110 (11), p.4245-4250
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Does multi-way, long-range chromatin contact data advance 3D genome reconstruction?
Author / Creator:Olshen, Adam B. ; Segal, Mark R.
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2023-02, Vol.24 (1), p.64-64, Article 64
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Mutational Analysis Reveals the Origin and Therapy-Driven Evolution of Recurrent Glioma
Author / Creator:Johnson, Brett E. ; Mazor, Tali ; Hong, Chibo ; Barnes, Michael ; Aihara, Koki ; McLean, Cory Y. ; Fouse, Shaun D. ; Yamamoto, Shogo ; Ueda, Hiroki ; Tatsuno, Kenji ; Asthana, Saurabh ; Jalbert, Llewellyn E. ; Nelson, Sarah J. ; Bollen, Andrew W. ; Gustafson, W. Clay ; Charron, Elise ; Weiss, William A. ; Smirnov, Ivan V. ; Song, Jun S. ; Olshen, Adam B. ; Cha, Soonmee ; Zhao, Yongjun ; Moore, Richard A. ; Mungali, Andrew J. ; Jones, Steven J. M. ; Hirst, Martin ; Marra, Marco A. ; Saito, Nobuhito ; Aburatani, Hiroyuki ; Mukasa, Akitake ; Berger, Mitchel S. ; Chang, Susan M. ; Taylor, Barry S. ; Costello, Joseph F.
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2014-01, Vol.343 (6167), p.189-193
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Changes in Abundance of Oral Microbiota Associated with Oral Cancer
Author / Creator:Schmidt, Brian L. ; Kuczynski, Justin ; Bhattacharya, Aditi ; Huey, Bing ; Corby, Patricia M. ; Queiroz, Erica L. S. ; Nightingale, Kira ; Kerr, A. Ross ; DeLacure, Mark D. ; Veeramachaneni, Ratna ; Olshen, Adam B. ; Albertson, Donna G.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-06, Vol.9 (6), p.e98741-e98741
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Pan-cancer identification of clinically relevant genomic subtypes using outcome-weighted integrative clustering
Author / Creator:Arora, Arshi ; Olshen, Adam B. ; Seshan, Venkatraman E. ; Shen, Ronglai
Publisher:England: BioMed Central Ltd
Journal title:Genome medicine, 2020-12, Vol.12 (1), p.110-110, Article 110
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Genome-wide DNA methylation is predictive of outcome in juvenile myelomonocytic leukemia
Author / Creator:Stieglitz, Elliot ; Mazor, Tali ; Olshen, Adam B. ; Geng, Huimin ; Gelston, Laura C. ; Akutagawa, Jon ; Lipka, Daniel B. ; Plass, Christoph ; Flotho, Christian ; Chehab, Farid F. ; Braun, Benjamin S. ; Costello, Joseph F. ; Loh, Mignon L.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2017-12, Vol.8 (1), p.2127-8, Article 2127
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Therapeutic implications of transcriptomics in head and neck cancer patient-derived xenografts
Author / Creator:Lee, Rex H. ; Roy, Ritu ; Li, Hua ; Hechmer, Aaron ; Zhu, Tian Ran ; Izgutdina, Adila ; Olshen, Adam B. ; Johnson, Daniel E. ; Grandis, Jennifer R.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2023-03, Vol.18 (3), p.e0282177-e0282177
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ArticlesPeer ReviewedFull Text
Quantitative proteomic analyses of mammary organoids reveals distinct signatures after exposure to environmental chemicals
Author / Creator:Williams, Katherine E. ; Lemieux, George A. ; Hassis, Maria E. ; Olshen, Adam B. ; Fisher, Susan J. ; Werb, Zena
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2016-03, Vol.113 (10), p.E1343-E1351
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Genome-wide association study provides evidence for a breast cancer risk locus at 6q22.33
Author / Creator:Gold, Bert ; Kirchhoff, Tomas ; Stefanov, Stefan ; Lautenberger, James ; Viale, Agnes ; Garber, Judy ; Friedman, Eitan ; Narod, Steven ; Olshen, Adam B ; Gregersen, Peter ; Kosarin, Kristi ; Olsh, Adam ; Bergeron, Julie ; Ellis, Nathan A ; Klein, Robert J ; Clark, Andrew G ; Norton, Larry ; Dean, Michael ; Boyd, Jeff ; Offit, Kenneth
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2008-03, Vol.105 (11), p.4340-4345
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ArticlesPeer ReviewedFull Text
Perturbations in common and distinct inflammatory pathways associated with morning and evening fatigue in outpatients receiving chemotherapy
Author / Creator:Kober, Kord M. ; Harris, Carolyn ; Conley, Yvette P. ; Dhruva, Anand ; Dokiparthi, Vasuda ; Hammer, Marilyn J. ; Levine, Jon D. ; Oppegaard, Kate ; Paul, Steven ; Shin, Joosun ; Sucher, Anatol ; Wright, Fay ; Yuen, Brian ; Olshen, Adam B. ; Miaskowski, Christine
Publisher:United States: John Wiley & Sons, Inc
Journal title:Cancer medicine (Malden, MA), 2023-03, Vol.12 (6), p.7369-7380
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ArticlesPeer ReviewedFull Text
Genetic Analysis of the Early Natural History of Epithelial Ovarian Carcinoma
Author / Creator:Pothuri, Bhavana ; Leitao, Mario M. ; Levine, Douglas A. ; Viale, Agnès ; Olshen, Adam B. ; Arroyo, Crispinita ; Bogomolniy, Faina ; Olvera, Narciso ; Lin, Oscar ; Soslow, Robert A. ; Robson, Mark E. ; Offit, Kenneth ; Barakat, Richard R. ; Boyd, Jeff
Publisher:United States: Public Library of Science
Journal title:PloS one, 2010-04, Vol.5 (4), p.e10358-e10358
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Development and Validation of a Gene-Based Model for Outcome Prediction in Germ Cell Tumors Using a Combined Genomic and Expression Profiling Approach
Author / Creator:Korkola, James E. ; Heck, Sandy ; Olshen, Adam B. ; Feldman, Darren R. ; Reuter, Victor E. ; Houldsworth, Jane ; Bosl, George J. ; Chaganti, R. S. K.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-12, Vol.10 (12), p.e0142846-e0142846
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COVIDNearTerm: A simple method to forecast COVID-19 hospitalizations
Author / Creator:Olshen, Adam B. ; Garcia, Ariadna ; Kapphahn, Kristopher I. ; Weng, Yingjie ; Vargo, Jason ; Pugliese, John A. ; Crow, David ; Wesson, Paul D. ; Rutherford, George W. ; Gonen, Mithat ; Desai, Manisha
Publisher:Cambridge: Cambridge University Press
Journal title:Journal of clinical and translational science, 2022-01, Vol.6 (1), p.e59-e59, Article e59
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A classification model for distinguishing copy number variants from cancer-related alterations
Author / Creator:Ostrovnaya, Irina ; Nanjangud, Gouri ; Olshen, Adam B
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2010-06, Vol.11 (1), p.297-297, Article 297
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Copy number and gene expression differences between African American and Caucasian American prostate cancer
Author / Creator:Rose, Amy E ; Satagopan, Jaya M ; Oddoux, Carole ; Zhou, Qin ; Xu, Ruliang ; Olshen, Adam B ; Yu, Jessie Z ; Dash, Atreya ; Jean-Gilles, Jerome ; Reuter, Victor ; Gerald, William L ; Lee, Peng ; Osman, Iman
Publisher:England: BioMed Central Ltd
Journal title:Journal of translational medicine, 2010-07, Vol.8 (1), p.70-70, Article 70
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A colorectal cancer classification system that associates cellular phenotype and responses to therapy
Author / Creator:Sadanandam, Anguraj ; Lyssiotis, Costas A ; Homicsko, Krisztian ; Collisson, Eric A ; Gibb, William J ; Wullschleger, Stephan ; Ostos, Liliane C Gonzalez ; Lannon, William A ; Grotzinger, Carsten ; Del Rio, Maguy ; Lhermitte, Benoit ; Olshen, Adam B ; Wiedenmann, Bertram ; Cantley, Lewis C ; Gray, Joe W ; Hanahan, Douglas
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2013-05, Vol.19 (5), p.619-625
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Subtypes of pancreatic ductal adenocarcinoma and their differing responses to therapy
Author / Creator:Collisson, Eric A ; Sadanandam, Anguraj ; Olson, Peter ; Gibb, William J ; Truitt, Morgan ; Gu, Shenda ; Cooc, Janine ; Weinkle, Jennifer ; Kim, Grace E ; Jakkula, Lakshmi ; Feiler, Heidi S ; Ko, Andrew H ; Olshen, Adam B ; Danenberg, Kathleen L ; Tempero, Margaret A ; Spellman, Paul T ; Hanahan, Douglas ; Gray, Joe W
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2011-04, Vol.17 (4), p.500-503
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Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway
Author / Creator:Shain, A Hunter ; Garrido, Maria ; Botton, Thomas ; Talevich, Eric ; Yeh, Iwei ; Sanborn, J Zachary ; Chung, Jongsuk ; Wang, Nicholas J ; Kakavand, Hojabr ; Mann, Graham J ; Thompson, John F ; Wiesner, Thomas ; Roy, Ritu ; Olshen, Adam B ; Gagnon, Alexander ; Gray, Joe W ; Huh, Nam ; Hur, Joe S ; Busam, Klaus J ; Scolyer, Richard A ; Cho, Raymond J ; Murali, Rajmohan ; Bastian, Boris C
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2015-10, Vol.47 (10), p.1194-1199
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Showing 1 to 20 of 43 results

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Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity

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Integrative Subtype Discovery in Glioblastoma Using iCluster

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Pattern discovery and cancer gene identification in integrated cancer genomic data

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Does multi-way, long-range chromatin contact data advance 3D genome reconstruction?

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Mutational Analysis Reveals the Origin and Therapy-Driven Evolution of Recurrent Glioma

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Changes in Abundance of Oral Microbiota Associated with Oral Cancer

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Pan-cancer identification of clinically relevant genomic subtypes using outcome-weighted integrative clustering

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Genome-wide DNA methylation is predictive of outcome in juvenile myelomonocytic leukemia

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Therapeutic implications of transcriptomics in head and neck cancer patient-derived xenografts

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Quantitative proteomic analyses of mammary organoids reveals distinct signatures after exposure to environmental chemicals

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Genome-wide association study provides evidence for a breast cancer risk locus at 6q22.33

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Perturbations in common and distinct inflammatory pathways associated with morning and evening fatigue in outpatients receiving chemotherapy

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Genetic Analysis of the Early Natural History of Epithelial Ovarian Carcinoma

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Development and Validation of a Gene-Based Model for Outcome Prediction in Germ Cell Tumors Using a Combined Genomic and Expression Profiling Approach

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COVIDNearTerm: A simple method to forecast COVID-19 hospitalizations

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A classification model for distinguishing copy number variants from cancer-related alterations

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Copy number and gene expression differences between African American and Caucasian American prostate cancer

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A colorectal cancer classification system that associates cellular phenotype and responses to therapy

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Subtypes of pancreatic ductal adenocarcinoma and their differing responses to therapy

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Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway

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