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Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing
Author / Creator:Bartoschek, Michael ; Oskolkov, Nikolay ; Bocci, Matteo ; Lövrot, John ; Larsson, Christer ; Sommarin, Mikael ; Madsen, Chris D. ; Lindgren, David ; Pekar, Gyula ; Karlsson, Göran ; Ringnér, Markus ; Bergh, Jonas ; Björklund, Åsa ; Pietras, Kristian
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-12, Vol.9 (1), p.5150-13, Article 5150
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Predicting type 2 diabetes via machine learning integration of multiple omics from human pancreatic islets
Author / Creator:Rönn, Tina ; Perfilyev, Alexander ; Oskolkov, Nikolay ; Ling, Charlotte
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2024-06, Vol.14 (1), p.14637-17, Article 14637
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Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia
Author / Creator:Halvorsen, Matthew ; Huh, Ruth ; Oskolkov, Nikolay ; Wen, Jia ; Netotea, Sergiu ; Giusti-Rodriguez, Paola ; Karlsson, Robert ; Bryois, Julien ; Nystedt, Björn ; Ameur, Adam ; Kähler, Anna K. ; Ancalade, NaEshia ; Farrell, Martilias ; Crowley, James J. ; Li, Yun ; Magnusson, Patrik K. E. ; Gyllensten, Ulf ; Hultman, Christina M. ; Sullivan, Patrick F. ; Szatkiewicz, Jin P.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-04, Vol.11 (1), p.1842-1842, Article 1842
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Genetic variant effects on gene expression in human pancreatic islets and their implications for T2D
Author / Creator:Viñuela, Ana ; Varshney, Arushi ; van de Bunt, Martijn ; Prasad, Rashmi B. ; Asplund, Olof ; Bennett, Amanda ; Boehnke, Michael ; Brown, Andrew A. ; Erdos, Michael R. ; Fadista, João ; Hansson, Ola ; Hatem, Gad ; Howald, Cédric ; Iyengar, Apoorva K. ; Johnson, Paul ; Krus, Ulrika ; MacDonald, Patrick E. ; Mahajan, Anubha ; Manning Fox, Jocelyn E. ; Narisu, Narisu ; Nylander, Vibe ; Orchard, Peter ; Oskolkov, Nikolay ; Panousis, Nikolaos I. ; Payne, Anthony ; Stitzel, Michael L. ; Vadlamudi, Swarooparani ; Welch, Ryan ; Collins, Francis S. ; Mohlke, Karen L. ; Gloyn, Anna L. ; Scott, Laura J. ; Dermitzakis, Emmanouil T. ; Groop, Leif ; Parker, Stephen C. J. ; McCarthy, Mark I.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-09, Vol.11 (1), p.4912-14, Article 4912
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Unraveling the ancient fungal DNA from the Iceman gut
Author / Creator:Oskolkov, Nikolay ; Sandionigi, Anna ; Götherström, Anders ; Canini, Fabiana ; Turchetti, Benedetta ; Zucconi, Laura ; Mimmo, Tanja ; Buzzini, Pietro ; Borruso, Luigimaria
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2024-12, Vol.25 (1), p.1225-11, Article 1225
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aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow
Author / Creator:Pochon, Zoé ; Bergfeldt, Nora ; Kırdök, Emrah ; Vicente, Mário ; Naidoo, Thijessen ; van der Valk, Tom ; Altınışık, N. Ezgi ; Krzewińska, Maja ; Dalén, Love ; Götherström, Anders ; Mirabello, Claudio ; Unneberg, Per ; Oskolkov, Nikolay
Publisher:London: BioMed Central Ltd
Journal title:Genome Biology, 2023-10, Vol.24 (1), p.1-242, Article 242
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Genetic predisposition for beta cell fragility underlies type 1 and type 2 diabetes
Author / Creator:Dooley, James ; Tian, Lei ; Schonefeldt, Susann ; Delghingaro-Augusto, Viviane ; Garcia-Perez, Josselyn E ; Pasciuto, Emanuela ; Di Marino, Daniele ; Carr, Edward J ; Oskolkov, Nikolay ; Lyssenko, Valeriya ; Franckaert, Dean ; Lagou, Vasiliki ; Overbergh, Lut ; Vandenbussche, Jonathan ; Allemeersch, Joke ; Chabot-Roy, Genevieve ; Dahlstrom, Jane E ; Laybutt, D Ross ; Petrovsky, Nikolai ; Socha, Luis ; Gevaert, Kris ; Jetten, Anton M ; Lambrechts, Diether ; Linterman, Michelle A ; Goodnow, Chris C ; Nolan, Christopher J ; Lesage, Sylvie ; Schlenner, Susan M ; Liston, Adrian
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2016-05, Vol.48 (5), p.519-527
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Author Correction: Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia
Author / Creator:Halvorsen, Matthew ; Huh, Ruth ; Oskolkov, Nikolay ; Wen, Jia ; Netotea, Sergiu ; Giusti-Rodriguez, Paola ; Karlsson, Robert ; Bryois, Julien ; Nystedt, Björn ; Ameur, Adam ; Kähler, Anna K. ; Ancalade, NaEshia ; Farrell, Martilias ; Crowley, James J. ; Li, Yun ; Magnusson, Patrik K. E. ; Gyllensten, Ulf ; Hultman, Christina M. ; Sullivan, Patrick F. ; Szatkiewicz, Jin P.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-01, Vol.13 (1), p.191-191, Article 191
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App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden
Author / Creator:Kennedy, Beatrice ; Fitipaldi, Hugo ; Hammar, Ulf ; Maziarz, Marlena ; Tsereteli, Neli ; Oskolkov, Nikolay ; Varotsis, Georgios ; Franks, Camilla A. ; Nguyen, Diem ; Spiliopoulos, Lampros ; Adami, Hans-Olov ; Björk, Jonas ; Engblom, Stefan ; Fall, Katja ; Grimby-Ekman, Anna ; Litton, Jan-Eric ; Martinell, Mats ; Oudin, Anna ; Sjöström, Torbjörn ; Timpka, Toomas ; Sudre, Carole H. ; Graham, Mark S. ; du Cadet, Julien Lavigne ; Chan, Andrew T. ; Davies, Richard ; Ganesh, Sajaysurya ; May, Anna ; Ourselin, Sébastien ; Pujol, Joan Capdevila ; Selvachandran, Somesh ; Wolf, Jonathan ; Spector, Tim D. ; Steves, Claire J. ; Gomez, Maria F. ; Franks, Paul W. ; Fall, Tove
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-04, Vol.13 (1), p.2110-2110, Article 2110
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Epigenetic modulators link mitochondrial redox homeostasis to cardiac function in a sex-dependent manner
Author / Creator:ElBeck, Zaher ; Hossain, Mohammad Bakhtiar ; Siga, Humam ; Oskolkov, Nikolay ; Karlsson, Fredrik ; Lindgren, Julia ; Walentinsson, Anna ; Koppenhöfer, Dominique ; Jarvis, Rebecca ; Bürli, Roland ; Jamier, Tanguy ; Franssen, Elske ; Firth, Mike ; Degasperi, Andrea ; Bendtsen, Claus ; Menzies, Robert I. ; Streckfuss-Bömeke, Katrin ; Kohlhaas, Michael ; Nickel, Alexander G. ; Lund, Lars H. ; Maack, Christoph ; Végvári, Ákos ; Betsholtz, Christer
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-03, Vol.15 (1), p.2358-23, Article 2358
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Identification of microbial pathogens in Neolithic Scandinavian humans
Author / Creator:Bergfeldt, Nora ; Kırdök, Emrah ; Oskolkov, Nikolay ; Mirabello, Claudio ; Unneberg, Per ; Malmström, Helena ; Fraser, Magdalena ; Sanchez-Quinto, Federico ; Jorgensen, Roger ; Skar, Birgitte ; Lidén, Kerstin ; Jakobsson, Mattias ; Storå, Jan ; Götherström, Anders
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2024-03, Vol.14 (1), p.5630-5630, Article 5630
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High-throughput muscle fiber typing from RNA sequencing data
Author / Creator:Oskolkov, Nikolay ; Santel, Malgorzata ; Parikh, Hemang M. ; Ekström, Ola ; Camp, Gray J. ; Miyamoto-Mikami, Eri ; Ström, Kristoffer ; Mir, Bilal Ahmad ; Kryvokhyzha, Dmytro ; Lehtovirta, Mikko ; Kobayashi, Hiroyuki ; Kakigi, Ryo ; Naito, Hisashi ; Eriksson, Karl-Fredrik ; Nystedt, Björn ; Fuku, Noriyuki ; Treutlein, Barbara ; Pääbo, Svante ; Hansson, Ola
Publisher:London: BioMed Central Ltd
Journal title:Skeletal muscle, 2022-07, Vol.12 (1), p.1-16, Article 16
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Myocardin Family Members Drive Formation of Caveolae
Author / Creator:Krawczyk, Katarzyna K. ; Yao Mattisson, Ingrid ; Ekman, Mari ; Oskolkov, Nikolay ; Grantinge, Rebecka ; Kotowska, Dorota ; Olde, Björn ; Hansson, Ola ; Albinsson, Sebastian ; Miano, Joseph M. ; Rippe, Catarina ; Swärd, Karl
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-08, Vol.10 (8), p.e0133931-e0133931
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A Syntenic Cross Species Aneuploidy Genetic Screen Links RCAN1 Expression to β-Cell Mitochondrial Dysfunction in Type 2 Diabetes
Author / Creator:Peiris, Heshan ; Duffield, Michael D. ; Fadista, Joao ; Jessup, Claire F. ; Kashmir, Vinder ; Genders, Amanda J. ; McGee, Sean L. ; Martin, Alyce M. ; Saiedi, Madiha ; Morton, Nicholas ; Carter, Roderick ; Cousin, Michael A. ; Kokotos, Alexandros C. ; Oskolkov, Nikolay ; Volkov, Petr ; Hough, Tertius A. ; Fisher, Elizabeth M. C. ; Tybulewicz, Victor L. J. ; Busciglio, Jorge ; Coskun, Pinar E. ; Becker, Ann ; Belichenko, Pavel V. ; Mobley, William C. ; Ryan, Michael T. ; Chan, Jeng Yie ; Laybutt, D. Ross ; Coates, P. Toby ; Yang, Sijun ; Ling, Charlotte ; Groop, Leif ; Pritchard, Melanie A. ; Keating, Damien J.
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2016-05, Vol.12 (5), p.e1006033-e1006033
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Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT [version 2; peer review: 1 approved, 3 approved with reservations]
Author / Creator:Borry, Maxime ; Forsythe, Adrian ; Andrades Valtueña, Aida ; Hübner, Alexander ; Ibrahim, Anan ; Quagliariello, Andrea ; White, Anna E. ; Kocher, Arthur ; Vågene‬, Åshild J. ; Bartholdy, Bjørn Peare ; Spurīte, Diāna ; Ponce-Soto, Gabriel Yaxal ; Neumann, Gunnar ; Huang, I-Ting ; Light, Ian ; Velsko, Irina M. ; Jackson, Iseult ; Frangenberg, Jasmin ; Serrano, Javier G. ; Fumey, Julien ; Özdoğan, Kadir T. ; Blevins, Kelly E. ; Daly, Kevin G. ; Lopopolo, Maria ; Moraitou, Markella ; Michel, Megan ; van Os, Meriam ; Bravo-Lopez, Miriam J. ; Sarhan, Mohamed S. ; Dagtas, Nihan D. ; Oskolkov, Nikolay ; Smith, Olivia S. ; Lebrasseur, Ophélie ; Rozwalak, Piotr ; Eisenhofer, Raphael ; Wasef, Sally ; Ramachandran, Shreya L. ; Vanghi, Valentina ; Warinner, Christina ; Fellows Yates, James A.
Publisher:England: Faculty of 1000 Ltd
Journal title:F1000 research, 2024, Vol.12, p.926
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Mercury-Selenium Accumulation Patterns in Muscle Tissue of Two Freshwater Fish Species, Eurasian Perch
Author / Creator:Regnell, Olof ; Tesson, Sylvie V. M ; Oskolkov, Nikolay ; Nerentorp, Michelle
Publisher:Springer
Journal title:Water, air, and soil pollution, 2022-07, Vol.233 (7)
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Identification of proliferative and mature β-cells in the islets of Langerhans
Author / Creator:Bader, Erik ; Migliorini, Adriana ; Gegg, Moritz ; Moruzzi, Noah ; Gerdes, Jantje ; Roscioni, Sara S. ; Bakhti, Mostafa ; Brandl, Elisabeth ; Irmler, Martin ; Beckers, Johannes ; Aichler, Michaela ; Feuchtinger, Annette ; Leitzinger, Christin ; Zischka, Hans ; Wang-Sattler, Rui ; Jastroch, Martin ; Tschöp, Matthias ; Machicao, Fausto ; Staiger, Harald ; Häring, Hans-Ulrich ; Chmelova, Helena ; Chouinard, Julie A. ; Oskolkov, Nikolay ; Korsgren, Olle ; Speier, Stephan ; Lickert, Heiko
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2016-07, Vol.535 (7612), p.430-434
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Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci
Author / Creator:Reschen, Michael E ; Mahajan, Anubha ; William Rayner, N ; Scott, Laura J ; Yengo, Loic ; Wahl, Simone ; Kestler, Hans ; Chheda, Himanshu ; Eisele, Lewin ; Steinthorsdottir, Valgerdur ; Chen, Han ; Fuchsberger, Christian ; Kwan, Phoenix ; Thomsen, Soren K ; Rundle, Jana K ; van de Bunt, Martijn ; Voight, Benjamin F ; Abecasis, Gonçalo R ; Baldassarre, Damiano ; Carey, Jason ; Chines, Peter S ; Crenshaw, Andrew T ; Edkins, Sarah ; Eury, Elodie ; Fontanillas, Pierre ; Franks, Paul W ; Gertow, Karl ; Groves, Christopher J ; Hassinen, Maija ; Herder, Christian ; Hreidarsson, Astradur B ; Jackson, Anne U ; Jonsson, Anna ; Jørgensen, Marit E ; Jørgensen, Torben ; Kao, Wen-Hong L ; Kerrison, Nicola D ; Kinnunen, Leena ; Kravic, Jasmina ; Langford, Cordelia ; Lichtner, Peter ; Lindholm, Eero ; Lobbens, Stéphane ; Luan, Jian'an ; Meyer, Julia ; Mihailov, Evelin ; Mühleisen, Thomas W ; Navarro, Carmen ; Oskolkov, Nikolay N ; Pechlivanis, Sonali ; Platou, Carl G P ; Rybin, Denis ; van der Schouw, Yvonne T ; Sennblad, Bengt ; Steinbach, Gerald ; Storm, Petter ; Sun, Qi ; Thorand, Barbara ; Tikkanen, Emmi ; Trakalo, Joseph ; Tremoli, Elena ; Wood, Andrew R ; Zeggini, Eleftheria ; Birney, Ewan ; Pasquali, Lorenzo ; Pankow, James S ; van Duijn, Cornelia ; Sijbrands, Eric ; Hu, Frank B ; Thorsteinsdottir, Unnur ; Stefansson, Kari ; Lakka, Timo A ; Rauramaa, Rainer ; Stumvoll, Michael ; Korpi-Hyövälti, Eeva ; Kuusisto, Johanna ; Metspalu, Andres ; Jöcke, Karl-Heinz ; Moebus, Susanne ; Bergman, Richard N ; Collins, Francis S ; Mohlke, Karen L ; Koistinen, Heikki ; Tuomilehto, Jaakko ; Deloukas, Panagiotis ; Donnelly, Peter J ; Frayling, Timothy M ; Sladek, Rob ; Froguel, Philippe ; Hansen, Torben ; Kathiresan, Sekar ; Barroso, Inês ; Langenberg, Claudia ; Wareham, Nicholas J ; O'Callaghan, Christopher A ; Gloyn, Anna L ; Altshuler, David ; Boehnke, Michael ; Teslovich, Tanya M ; Morris, Andrew P
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2015-12, Vol.47 (12), p.1415-1425
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Mercury–Selenium Accumulation Patterns in Muscle Tissue of Two Freshwater Fish Species, Eurasian Perch (Perca fluviatilis) and Vendace (Coregonus albula)
Author / Creator:Regnell, Olof ; Tesson, Sylvie V. M. ; Oskolkov, Nikolay ; Nerentorp, Michelle
Publisher:Cham: Springer International Publishing
Journal title:Water, air, and soil pollution, 2022-07, Vol.233 (7), Article 236
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Epigenetic modulators link mitochondrial redox homeostasis to cardiac function
Author / Creator:Elbeck, Zaher ; Mohammad Bakhtiar Hossain ; Humam Siga ; Oskolkov, Nikolay ; Karlsson, Fredrik ; Lindgren, Julia ; Walentinsson, Anna ; Cristobal Dos Remedios ; Koppenhöfer, Dominique ; Jarvis, Rebecca ; Bürli, Roland ; Jamier, Tanguy ; Franssen, Elske ; Firth, Mike ; Degasperi, Andrea ; Bendtsen, Claus ; Dudek, Jan ; Kohlhaas, Michael ; Nickel, Alexander G ; Lund, Lars H ; Maack, Christoph ; Végvári, Ákos ; Betsholtz, Christer
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-03
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Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing

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Predicting type 2 diabetes via machine learning integration of multiple omics from human pancreatic islets

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Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia

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Genetic variant effects on gene expression in human pancreatic islets and their implications for T2D

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Unraveling the ancient fungal DNA from the Iceman gut

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aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow

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Genetic predisposition for beta cell fragility underlies type 1 and type 2 diabetes

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Author Correction: Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia

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App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden

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Epigenetic modulators link mitochondrial redox homeostasis to cardiac function in a sex-dependent manner

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Identification of microbial pathogens in Neolithic Scandinavian humans

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High-throughput muscle fiber typing from RNA sequencing data

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Myocardin Family Members Drive Formation of Caveolae

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A Syntenic Cross Species Aneuploidy Genetic Screen Links RCAN1 Expression to β-Cell Mitochondrial Dysfunction in Type 2 Diabetes

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Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT [version 2; peer review: 1 approved, 3 approved with reservations]

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Mercury-Selenium Accumulation Patterns in Muscle Tissue of Two Freshwater Fish Species, Eurasian Perch

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Identification of proliferative and mature β-cells in the islets of Langerhans

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Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci

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Mercury–Selenium Accumulation Patterns in Muscle Tissue of Two Freshwater Fish Species, Eurasian Perch (Perca fluviatilis) and Vendace (Coregonus albula)

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Epigenetic modulators link mitochondrial redox homeostasis to cardiac function

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