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ArticlesPeer ReviewedFull Text
Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system
Author / Creator:Paul, Sinu ; Croft, Nathan P. ; Purcell, Anthony W. ; Tscharke, David C. ; Sette, Alessandro ; Nielsen, Morten ; Peters, Bjoern
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2020-05, Vol.16 (5), p.e1007757-e1007757
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Footprints of antigen processing boost MHC class II natural ligand predictions
Author / Creator:Barra, Carolina ; Alvarez, Bruno ; Paul, Sinu ; Sette, Alessandro ; Peters, Bjoern ; Andreatta, Massimo ; Buus, Søren ; Nielsen, Morten
Publisher:England: BioMed Central Ltd
Journal title:Genome medicine, 2018-11, Vol.10 (1), p.84-84, Article 84
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Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses
Author / Creator:da Silva Antunes, Ricardo ; Paul, Sinu ; Sidney, John ; Weiskopf, Daniela ; Dan, Jennifer M. ; Phillips, Elizabeth ; Mallal, Simon ; Crotty, Shane ; Sette, Alessandro ; Lindestam Arlehamn, Cecilia S.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-01, Vol.12 (1), p.e0169086-e0169086
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ArticlesPeer ReviewedFull Text
Automatic Generation of Validated Specific Epitope Sets
Author / Creator:Sette, Alessandro ; Weiskopf, Daniela ; Lindestam Arlehamn, Cecilia ; Paul, Sinu ; Sidney, John ; Carrasco Pro, Sebastian ; Peters, Bjoern
Publisher:Cairo, Egypt: Hindawi Publishing Corporation
Journal title:Journal of immunology research, 2015-01, Vol.2015 (2015), p.1-11
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A Quantitative Analysis of Complexity of Human Pathogen-Specific CD4 T Cell Responses in Healthy M. tuberculosis Infected South Africans
Author / Creator:Lindestam Arlehamn, Cecilia S. ; McKinney, Denise M. ; Carpenter, Chelsea ; Paul, Sinu ; Rozot, Virginie ; Makgotlho, Edward ; Gregg, Yolande ; van Rooyen, Michele ; Ernst, Joel D. ; Hatherill, Mark ; Hanekom, Willem A. ; Peters, Bjoern ; Scriba, Thomas J. ; Sette, Alessandro
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2016-07, Vol.12 (7), p.e1005760-e1005760
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Immunological consequences of intragenus conservation of Mycobacterium tuberculosis T-cell epitopes
Author / Creator:Lindestam Arlehamn, Cecilia S. ; Paul, Sinu ; Mele, Federico ; Huang, Charlie ; Greenbaum, Jason A. ; Vita, Randi ; Sidney, John ; Peters, Bjoern ; Sallusto, Federica ; Sette, Alessandro
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2015-01, Vol.112 (2), p.E147-E155
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ArticlesPeer ReviewedFull Text
Correction: Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses
Author / Creator:da Silva Antunes, Ricardo ; Paul, Sinu ; Sidney, John ; Weiskopf, Daniela ; Dan, Jennifer M. ; Phillips, Elizabeth ; Mallal, Simon ; Crotty, Shane ; Sette, Alessandro ; Lindestam Arlehamn, Cecilia S.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2018, Vol.13 (2), p.e0193382-e0193382
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ArticlesPeer ReviewedFull Text
Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes
Author / Creator:Paul, Sinu ; Arlehamn, Cecilia S. Lindestam ; Schulten, Veronique ; Westernberg, Luise ; Sidney, John ; Peters, Bjoern ; Sette, Alessandro
Publisher:England: BioMed Central Ltd
Journal title:BMC immunology, 2017-06, Vol.18 (S1), p.20-20, Article 20
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Evaluating the Immunogenicity of Protein Drugs by Applying In Vitro MHC Binding Data and the Immune Epitope Database and Analysis Resource
Author / Creator:Sette, Alessandro ; Kim, Yohan ; Fleri, Ward ; Weiskopf, Daniela ; Sidney, John ; Kolla, Ravi V. ; Paul, Sinu ; Peters, Bjoern
Publisher:Cairo, Egypt: Hindawi Publishing Corporation
Journal title:Journal of immunology research, 2013-01, Vol.2013 (2013), p.1-7
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Frequent associations between CTL and T-Helper epitopes in HIV-1 genomes and implications for multi-epitope vaccine designs
Author / Creator:Paul, Sinu ; Piontkivska, Helen
Publisher:England: BioMed Central Ltd
Journal title:BMC microbiology, 2010-08, Vol.10 (1), p.212-212
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Discovery of novel targets for multi-epitope vaccines: Screening of HIV-1 genomes using association rule mining
Author / Creator:Paul, Sinu ; Piontkivska, Helen
Publisher:England: BioMed Central Ltd
Journal title:Retrovirology, 2009-07, Vol.6 (1), p.62-62, Article 62
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Human CD8⁺ T-Cell Responses Against the 4 Dengue Virus Serotypes Are Associated With Distinct Patterns of Protein Targets
Author / Creator:Weiskopf, Daniela ; Cerpas, Cristhiam ; Angelo, Michael A. ; Bangs, Derek J. ; Sidney, John ; Paul, Sinu ; Peters, Bjoern ; Sanches, Françoise P. ; Silvera, Cassia G. T. ; Costa, Priscilla R. ; Kallas, Esper G. ; Gresh, Lionel ; de Silva, Aruna D. ; Balmaseda, Angel ; Harris, Eva ; Sette, Alessandro
Publisher:United States: Oxford University Press
Journal title:The Journal of infectious diseases, 2015-12, Vol.212 (11), p.1743-1751
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ArticlesPeer ReviewedFull Text
HLA-DRB1 Alleles Are Associated With Different Magnitudes of Dengue Virus-Specific CD4⁺ T-Cell Responses
Author / Creator:Weiskopf, Daniela ; Angelo, Michael A. ; Grifoni, Alba ; O'Rourke, Patrick H. ; Sidney, John ; Paul, Sinu ; De Silva, Aruna D. ; Phillips, Elizabeth ; Mallal, Simon ; Premawansa, Sunil ; Premawansa, Gayani ; Wijewickrama, Ananda ; Peters, Bjoern ; Sette, Alessandro
Publisher:United States: Oxford University Press
Journal title:The Journal of infectious diseases, 2016-10, Vol.214 (7), p.1117-1124
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ArticlesPeer ReviewedFull Text
High-resolution African HLA resource uncovers HLA-DRB1 expression effects underlying vaccine response
Author / Creator:Mentzer, Alexander J ; Dilthey, Alexander T ; Pollard, Martin ; Gurdasani, Deepti ; Karakoc, Emre ; Carstensen, Tommy ; Muhwezi, Allan ; Cutland, Clare ; Diarra, Amidou ; da Silva Antunes, Ricardo ; Paul, Sinu ; Smits, Gaby ; Wareing, Susan ; Kim, HwaRan ; Pomilla, Cristina ; Chong, Amanda Y ; Brandt, Debora Y. C ; Nielsen, Rasmus ; Neaves, Samuel ; Timpson, Nicolas ; Crinklaw, Austin ; Lindestam Arlehamn, Cecilia S ; Rautanen, Anna ; Kizito, Dennison ; Parks, Tom ; Auckland, Kathryn ; Elliott, Kate E ; Mills, Tara ; Ewer, Katie ; Edwards, Nick ; Fatumo, Segun ; Webb, Emily ; Peacock, Sarah ; Jeffery, Katie ; van der Klis, Fiona R. M ; Kaleebu, Pontiano ; Vijayanand, Pandurangan ; Peters, Bjorn ; Sette, Alessandro ; Cereb, Nezih ; Sirima, Sodiomon ; Madhi, Shabir A ; Elliott, Alison M ; McVean, Gil ; Hill, Adrian V. S ; Sandhu, Manjinder S
Publisher:New York: Nature Publishing Group
Journal title:Nature medicine, 2024-05, Vol.30 (5), p.1384-1394
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ArticlesPeer ReviewedFull Text
The Use of the Immune Epitope Database to Study Autoimmune Epitope Data Related to Alopecia Areata
Author / Creator:Sette, Alessandro ; Paul, Sinu ; Vaughan, Kerrie ; Peters, Bjoern
Publisher:United States: Elsevier Inc
Journal title:The Journal of investigative dermatology symposium proceedings, 2015-11, Vol.17 (2), p.36-41
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ArticlesPeer ReviewedFull Text
Correction: Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4.sup.+ T Cell Responses
Author / Creator:da Silva Antunes, Ricardo ; Paul, Sinu ; Sidney, John ; Weiskopf, Daniela ; Dan, Jennifer M ; Phillips, Elizabeth ; Mallal, Simon ; Crotty, Shane ; Sette, Alessandro ; Lindestam Arlehamn, Cecilia S
Publisher:Public Library of Science
Journal title:PloS one, 2018-02, Vol.13 (2), p.e0193382
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Peripheral blood T-cell deficiency and hyperinflammatory monocyte responses associate with MAC lung disease
Author / Creator:Cecilia S Lindestam Arlehamn ; Benson, Basilin ; Kuan, Rebecca ; Dill-Mcfarland, Kimberley A ; Peterson, Glenna J ; Sinu, Paul ; Nguyen, Felicia K ; Gilman, Robert H ; Saito, Mayuko ; Taplitz, Randy ; Arentz, Matthew ; Goss, Christopher H ; Aitken, Moira L ; Horne, David J ; Shah, Javeed A ; Sette, Alessandro ; Hawn, Thomas R
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-03
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ArticlesFull Text
Benchmarking predictions of MHC class I restricted T cell epitopes
Author / Creator:Sinu, Paul ; Croft, Nathan P ; Purcell, Anthony W ; Tscharke, David C ; Sette, Alessandro ; Nielsen, Morten ; Peters, Bjoern
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-07
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ArticlesPeer ReviewedFull Text
Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4.sup.+ T Cell Responses
Author / Creator:da Silva Antunes, Ricardo ; Paul, Sinu ; Sidney, John ; Weiskopf, Daniela ; Dan, Jennifer M ; Phillips, Elizabeth ; Mallal, Simon ; Crotty, Shane ; Sette, Alessandro ; Lindestam Arlehamn, Cecilia S
Publisher:Public Library of Science
Journal title:PloS one, 2017-01, Vol.12 (1), p.e0169086
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ArticlesFull Text
NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data
Author / Creator:Jurtz, Vanessa Isabell ; Sinu, Paul ; Andreatta, Massimo ; Marcatili, Paolo ; Peters, Bjoern ; Nielsen, Morten
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2017-09
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Showing 1 to 20 of 24 results

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Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system

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Footprints of antigen processing boost MHC class II natural ligand predictions

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Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses

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Automatic Generation of Validated Specific Epitope Sets

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A Quantitative Analysis of Complexity of Human Pathogen-Specific CD4 T Cell Responses in Healthy M. tuberculosis Infected South Africans

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Immunological consequences of intragenus conservation of Mycobacterium tuberculosis T-cell epitopes

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Correction: Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses

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Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes

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Evaluating the Immunogenicity of Protein Drugs by Applying In Vitro MHC Binding Data and the Immune Epitope Database and Analysis Resource

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Frequent associations between CTL and T-Helper epitopes in HIV-1 genomes and implications for multi-epitope vaccine designs

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Discovery of novel targets for multi-epitope vaccines: Screening of HIV-1 genomes using association rule mining

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Human CD8⁺ T-Cell Responses Against the 4 Dengue Virus Serotypes Are Associated With Distinct Patterns of Protein Targets

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HLA-DRB1 Alleles Are Associated With Different Magnitudes of Dengue Virus-Specific CD4⁺ T-Cell Responses

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High-resolution African HLA resource uncovers HLA-DRB1 expression effects underlying vaccine response

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The Use of the Immune Epitope Database to Study Autoimmune Epitope Data Related to Alopecia Areata

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Correction: Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4.sup.+ T Cell Responses

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Peripheral blood T-cell deficiency and hyperinflammatory monocyte responses associate with MAC lung disease

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Benchmarking predictions of MHC class I restricted T cell epitopes

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Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4.sup.+ T Cell Responses

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NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

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