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The genome sequence of the colonial chordate, Botryllus schlosseri
Author / Creator:Voskoboynik, Ayelet ; Neff, Norma F ; Sahoo, Debashis ; Newman, Aaron M ; Pushkarev, Dmitry ; Koh, Winston ; Passarelli, Benedetto ; Fan, H Christina ; Mantalas, Gary L ; Palmeri, Karla J ; Ishizuka, Katherine J ; Gissi, Carmela ; Griggio, Francesca ; Ben-Shlomo, Rachel ; Corey, Daniel M ; Penland, Lolita ; White, Richard A ; Weissman, Irving L ; Quake, Stephen R
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2013-07, Vol.2, p.e00569-e00569
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High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis
Author / Creator:Wang, Wanxin ; Penland, Lolita ; Gokce, Ozgun ; Croote, Derek ; Quake, Stephen R.
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2018-02, Vol.19 (1), p.140-140, Article 140
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Determinism and stochasticity during maturation of the zebrafish antibody repertoire
Author / Creator:Jiang, Ning ; Weinstein, Joshua A ; Penland, Lolita ; White, Richard A. III ; Fisher, Daniel S ; Quake, Stephen R
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2011-03, Vol.108 (13), p.5348-5353
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Identification of a Colonial Chordate Histocompatibility Gene
Author / Creator:Voskoboynik, Ayelet ; Newman, Aaron M. ; Corey, Daniel M. ; Sahoo, Debashis ; Pushkarev, Dmitry ; Neff, Norma F. ; Passarelli, Benedetto ; Koh, Winston ; Ishizuka, Katherine J. ; Palmeri, Karla J. ; Dimov, Ivan K. ; Keasar, Chen ; Fan, H. Christina ; Mantalas, Gary L. ; Sinha, Rahul ; Penland, Lolita ; Quake, Stephen R. ; Weissman, Irving L.
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2013-07, Vol.341 (6144), p.384-387
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Monitoring Pharmacologically Induced Immunosuppression by Immune Repertoire Sequencing to Detect Acute Allograft Rejection in Heart Transplant Patients: A Proof-of-Concept Diagnostic Accuracy Study
Author / Creator:Vollmers, Christopher ; De Vlaminck, Iwijn ; Valantine, Hannah A. ; Penland, Lolita ; Luikart, Helen ; Strehl, Calvin ; Cohen, Garrett ; Khush, Kiran K. ; Quake, Stephen R.
Publisher:United States: Public Library of Science
Journal title:PLoS medicine, 2015-10, Vol.12 (10), p.e1001890-e1001890
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Novel Exons and Splice Variants in the Human Antibody Heavy Chain Identified by Single Cell and Single Molecule Sequencing
Author / Creator:Vollmers, Christopher ; Penland, Lolita ; Kanbar, Jad N. ; Quake, Stephen R.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-01, Vol.10 (1), p.e0117050-e0117050
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Jellyfish swarms, tourists, and the Christ-child
Author / Creator:Dawson, Mike N ; Martin, Laura E. ; Penland, Lolita K.
Publisher:Dordrecht: Springer
Journal title:Hydrobiologia, 2001-05, Vol.451 (1-3), p.131-144
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A molecular cell atlas of the human lung from single-cell RNA sequencing
Author / Creator:Travaglini, Kyle J. ; Nabhan, Ahmad N. ; Penland, Lolita ; Sinha, Rahul ; Gillich, Astrid ; Sit, Rene V. ; Chang, Stephen ; Conley, Stephanie D. ; Mori, Yasuo ; Seita, Jun ; Berry, Gerald J. ; Shrager, Joseph B. ; Metzger, Ross J. ; Kuo, Christin S. ; Neff, Norma ; Weissman, Irving L. ; Quake, Stephen R. ; Krasnow, Mark A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2020-11, Vol.587 (7835), p.619-625
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A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Author / Creator:Almanzar, Nicole ; Antony, Jane ; Baghel, Ankit S. ; Bakerman, Isaac ; Bansal, Ishita ; Barres, Ben A. ; Beachy, Philip A. ; Berdnik, Daniela ; Bilen, Biter ; Brownfield, Douglas ; Cain, Corey ; Chan, Charles K. F. ; Chen, Michelle B. ; Clarke, Michael F. ; Conley, Stephanie D. ; Darmanis, Spyros ; Demers, Aaron ; Demir, Kubilay ; de Morree, Antoine ; Divita, Tessa ; du Bois, Haley ; Ebadi, Hamid ; Espinoza, F. Hernán ; Fish, Matt ; Gan, Qiang ; George, Benson M. ; Gillich, Astrid ; Gòmez-Sjöberg, Rafael ; Green, Foad ; Genetiano, Geraldine ; Gu, Xueying ; Gulati, Gunsagar S. ; Hahn, Oliver ; Haney, Michael Seamus ; Hang, Yan ; Harris, Lincoln ; He, Mu ; Hosseinzadeh, Shayan ; Huang, Albin ; Huang, Kerwyn Casey ; Iram, Tal ; Isobe, Taichi ; Ives, Feather ; Jones, Robert C. ; Kao, Kevin S. ; Karkanias, Jim ; Karnam, Guruswamy ; Keller, Andreas ; Kershner, Aaron M. ; Khoury, Nathalie ; Kim, Seung K. ; Kiss, Bernhard M. ; Kong, William ; Krasnow, Mark A. ; Kumar, Maya E. ; Kuo, Christin S. ; Lam, Jonathan ; Lee, Davis P. ; Lee, Song E. ; Lehallier, Benoit ; Leventhal, Olivia ; Li, Guang ; Li, Qingyun ; Liu, Ling ; Lo, Annie ; Lu, Wan-Jin ; Lugo-Fagundo, Maria F. ; Manjunath, Anoop ; May, Andrew P. ; Maynard, Ashley ; McGeever, Aaron ; McKay, Marina ; McNerney, M. Windy ; Merrill, Bryan ; Metzger, Ross J. ; Mignardi, Marco ; Min, Dullei ; Nabhan, Ahmad N. ; Neff, Norma F. ; Ng, Katharine M. ; Nguyen, Patricia K. ; Noh, Joseph ; Nusse, Roel ; Pálovics, Róbert ; Patkar, Rasika ; Peng, Weng Chuan ; Penland, Lolita ; Pisco, Angela Oliveira ; Pollard, Katherine ; Puccinelli, Robert ; Qi, Zhen ; Quake, Stephen R. ; Rando, Thomas A. ; Rulifson, Eric J. ; Schaum, Nicholas ; Segal, Joe M. ; Sikandar, Shaheen S. ; Sinha, Rahul ; Sit, Rene V. ; Sonnenburg, Justin
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2020-07, Vol.583 (7817), p.590-595
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Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
Author / Creator:Schaum, Nicholas ; Karkanias, Jim ; Neff, Norma F. ; May, Andrew P. ; Quake, Stephen R. ; Wyss-Coray, Tony ; Darmanis, Spyros ; Batson, Joshua ; Botvinnik, Olga ; Chen, Michelle B. ; Chen, Steven ; Green, Foad ; Jones, Robert ; Maynard, Ashley ; Penland, Lolita ; Pisco, Angela Oliveira ; Sit, Rene V. ; Stanley, Geoffrey M. ; Webber, James T. ; Zanini, Fabio ; Baghel, Ankit S ; Bakerman, Isaac ; Bansal, Ishita ; Berdnik, Daniela ; Bilen, Biter ; Brownfield, Douglas ; Cain, Corey ; Cho, Min ; Cirolia, Giana ; Conley, Stephanie D. ; Darmanis, Spyros ; Demers, Aaron ; Demir, Kubilay ; de Morree, Antoine ; Divita, Tessa ; du Bois, Haley ; Dulgeroff, Laughing Bear Torrez ; Ebadi, Hamid ; Espinoza, F. Hernán ; Fish, Matt ; Gan, Qiang ; George, Benson M. ; Gillich, Astrid ; Genetiano, Geraldine ; Gu, Xueying ; Gulati, Gunsagar S. ; Hang, Yan ; Hosseinzadeh, Shayan ; Huang, Albin ; Iram, Tal ; Isobe, Taichi ; Ives, Feather ; Kao, Kevin S. ; Karnam, Guruswamy ; Kershner, Aaron M. ; Kiss, Bernhard M. ; Kong, William ; Kumar, Maya E. ; Lam, Jonathan ; Lee, Davis P. ; Lee, Song E. ; Li, Guang ; Li, Qingyun ; Liu, Ling ; Lo, Annie ; Lu, Wan-Jin ; Manjunath, Anoop ; May, Kaia L. ; May, Oliver L. ; McKay, Marina ; Metzger, Ross J. ; Mignardi, Marco ; Min, Dullei ; Nabhan, Ahmad N. ; Ng, Katharine M. ; Noh, Joseph ; Patkar, Rasika ; Peng, Weng Chuan ; Puccinelli, Robert ; Rulifson, Eric J. ; Sikandar, Shaheen S. ; Sinha, Rahul ; Szade, Krzysztof ; Tan, Weilun ; Tato, Cristina ; Tellez, Krissie ; Travaglini, Kyle J. ; Tropini, Carolina ; Waldburger, Lucas ; van Weele, Linda J. ; Wosczyna, Michael N. ; Xiang, Jinyi ; Xue, Soso ; Youngyunpipatkul, Justin ; Zardeneta, Macy E. ; Zhang, Fan ; Zhou, Lu ; oungyunpipatkul, Justin Y ; Castro, Paola ; Croote, Derek
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2018-10, Vol.562 (7727), p.367-372
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ArticlesPeer ReviewedFull Text
Monitoring Pharmacologically Induced Immunosuppression by Immune Repertoire Sequencing to Detect Acute Allograft Rejection in Heart Transplant Patients: A Proof-of-Concept Diagnostic Accuracy Study: e...
Author / Creator:Vollmers, Christopher ; Vlaminck, Iwijn De ; Valantine, Hannah A ; Penland, Lolita ; Luikart, Helen ; Strehl, Calvin ; Cohen, Garrett ; Khush, Kiran K ; Quake, Stephen R
Publisher:San Francisco: Public Library of Science
Journal title:PLoS medicine, 2015-10, Vol.12 (10)
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Novel Exons and Splice Variants in the Human Antibody Heavy Chain Identified by Single Cell and Single Molecule Sequencing: e0117050
Author / Creator:Vollmers, Christopher ; Penland, Lolita ; Kanbar, Jad N ; Quake, Stephen R
Journal title:PloS one, 2015-01, Vol.10 (1)
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Tabula Microcebus: A transcriptomic cell atlas of mouse lemur, an emerging primate model organism
Author / Creator:The Tabula Microcebus Consortium ; Ezran, Camille ; Liu, Shixuan ; Chang, Stephen ; Jingsi Ming ; Botvinnik, Olga ; Penland, Lolita ; Tarashansky, Alexander ; De Morree, Antoine ; Travaglini, Kyle J ; Hasegawa, Kazuteru ; Sin, Hosu ; Sit, Rene ; Okamoto, Jennifer ; Sinha, Rahul ; Zhang, Yue ; Karanewsky, Caitlin J ; Pendleton, Jozeph L ; Morri, Maurizio ; Perret, Martine ; Aujard, Fabienne ; Stryer, Lubert ; Artandi, Steven ; Fuller, Margaret ; Weissman, Irving L ; Rando, Thomas A ; Ferrell, James E ; Wang, Bo ; Iwijn De Vlaminck ; Yang, Can ; Casey, Kerriann M ; Albertelli, Megan A ; Angela Oliveira Pisco ; Karkanias, Jim ; Neff, Norma ; Wu, Angela ; Quake, Stephen R ; Krasnow, Mark A
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2024-06
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High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis
Author / Creator:Wang, Wanxin ; Penland, Lolita ; Gokce, Ozgun ; Croote, Derek ; Quake, Stephen R
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2017-03
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A murine aging cell atlas reveals cell identity and tissue-specific trajectories of aging
Author / Creator:Kimmel, Jacob C ; Penland, Lolita ; Rubinstein, Nimrod D ; Hendrickson, David G ; Kelley, David R ; Rosenthal, Adam Z
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-06
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Ageing hallmarks exhibit organ-specific temporal signatures
Author / Creator:Schaum, Nicholas ; Lehallier, Benoit ; Hahn, Oliver ; Pálovics, Róbert ; Hosseinzadeh, Shayan ; Lee, Song E. ; Sit, Rene ; Lee, Davis P. ; Losada, Patricia Morán ; Zardeneta, Macy E. ; Fehlmann, Tobias ; Webber, James T. ; McGeever, Aaron ; Calcuttawala, Kruti ; Zhang, Hui ; Berdnik, Daniela ; Mathur, Vidhu ; Tan, Weilun ; Zee, Alexander ; Tan, Michelle ; Pisco, Angela Oliveira ; Karkanias, Jim ; Neff, Norma F. ; Keller, Andreas ; Darmanis, Spyros ; Quake, Stephen R. ; Wyss-Coray, Tony
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2020-07, Vol.583 (7817), p.596-602
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A molecular cell atlas of the human lung from single cell RNA sequencing
Author / Creator:Travaglini, Kyle J ; Nabhan, Ahmad N ; Penland, Lolita ; Sinha, Rahul ; Gillich, Astrid ; Sit, Rene V ; Chang, Stephen ; Conley, Stephanie D ; Mori, Yasuo ; Seita, Jun ; Berry, Gerald J ; Shrager, Joseph B ; Metzger, Ross J ; Kuo, Christin S ; Neff, Norma ; Weissman, Irving L ; Quake, Stephen R ; Krasnow, Mark A
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-03
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Molecular hallmarks of heterochronic parabiosis at single-cell resolution
Author / Creator:Pálovics, Róbert ; Keller, Andreas ; Schaum, Nicholas ; Tan, Weilun ; Fehlmann, Tobias ; Borja, Michael ; Kern, Fabian ; Bonanno, Liana ; Calcuttawala, Kruti ; Webber, James ; McGeever, Aaron ; Luo, Jian ; Pisco, Angela Oliveira ; Karkanias, Jim ; Neff, Norma F. ; Darmanis, Spyros ; Quake, Stephen R. ; Wyss-Coray, Tony
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2022-03, Vol.603 (7900), p.309-314
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Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory pro...
Author / Creator:Muus, Christoph ; Luecken, Malte D ; Eraslan, Gokcen ; Heimberg, Graham ; Sikkema, Lisa ; Kobayashi, Yoshihiko ; Eeshit Dhaval Vaishnav ; Subramanian, Ayshwarya ; Smillie, Christopher ; Duong, Elizabeth Thu ; Fiskin, Evgenij ; Triglia, Elena Torlai ; Becavin, Christophe ; Ansari, Meshal ; Cai, Peiwen ; Lin, Brian ; Buchanan, Justin ; Chen, Sijia ; Shu, Jian ; Haber, Adam L ; Chung, Hattie ; Montoro, Daniel T ; Adams, Taylor ; Hananeh Aliee ; Allon, Samuel J ; Andrusivova, Zaneta ; Angelidis, Ilias ; Orr Ashenberg ; Bassler, Kevin ; Benhar, Inbal ; Bergenstrahle, Joseph ; Bergenstrahle, Ludvig ; Bolt, Liam ; Braun, Emelie ; Chaffin, Mark ; Chichelnitskiy, Evgeny ; Chiou, Joshua ; Conlon, Thomas M ; Cuoco, Michael S ; Deprez, Marie ; Fischer, David S ; Gillich, Astrid ; Gould, Joshua ; Guo, Minzhe ; Gutierrez, Austin J ; Habermann, Arun C ; Tyler, Harvey ; He, Peng ; Hou, Xiaomeng ; Jaiswal, Alok ; Jiang, Peiyong ; Kapellos, Theodoros ; Kuo, Christin S ; Larsson, Ludvig ; Leney-Greene, Michael A ; Lim, Kyungtae ; Litvinukova, Monika ; Lu, Ji ; Ludwig, Leif S ; Luo, Wendy ; Maatz, Henrike ; Lira Mamanova ; Manakongtreecheep, Kasidet ; Charles-Hugo Marquette ; Mbano, Ian ; Mcadams, Alexi M ; Metzger, Ross J ; Nabhan, Ahmad N ; Nyquist, Sarah K ; Ordovas-Montanes, Jose ; Penland, Lolita ; Poirion, Olivier B ; Poli, Segio ; Cancan Qi ; Reichart, Daniel ; Rosas, Ivan ; Schupp, Jonas ; Sinha, Rahul ; Sit, Rene V ; Slowikowski, Kamil ; Slyper, Michal ; Smith, Neal ; Sountoulidis, Alex ; Strunz, Maximilian ; Talavera-Lopez, Carlos ; Tan, Peng ; Tantivit, Jessica ; Travaglini, Kyle J ; Tucker, Nathan R ; Vernon, Katherine ; Wadsworth, Marc H ; Waldman, Julia ; Wang, Xiuting ; Yan, Wenjun ; Ali Onder Yildirim ; Zhao, William ; Ziegler, Carly G K ; Regev, Aviv ; The Nhlbi Lungmap Consortium ; The Human Cell Atlas Lung Biological Network
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-04
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Single-cell transcriptomic characterization of 20 organs and tissues from individual mice creates a Tabula Muris
Author / Creator:The Tabula Muris Consortium ; Quake, Stephen R ; Wyss-Coray, Tony ; Darmanis, Spyros
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2018-03
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Showing 1 to 20 of 21 results

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The genome sequence of the colonial chordate, Botryllus schlosseri

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High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

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Determinism and stochasticity during maturation of the zebrafish antibody repertoire

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Identification of a Colonial Chordate Histocompatibility Gene

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Monitoring Pharmacologically Induced Immunosuppression by Immune Repertoire Sequencing to Detect Acute Allograft Rejection in Heart Transplant Patients: A Proof-of-Concept Diagnostic Accuracy Study

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Novel Exons and Splice Variants in the Human Antibody Heavy Chain Identified by Single Cell and Single Molecule Sequencing

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Jellyfish swarms, tourists, and the Christ-child

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A molecular cell atlas of the human lung from single-cell RNA sequencing

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A single-cell transcriptomic atlas characterizes ageing tissues in the mouse

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Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

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Monitoring Pharmacologically Induced Immunosuppression by Immune Repertoire Sequencing to Detect Acute Allograft Rejection in Heart Transplant Patients: A Proof-of-Concept Diagnostic Accuracy Study: e...

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Novel Exons and Splice Variants in the Human Antibody Heavy Chain Identified by Single Cell and Single Molecule Sequencing: e0117050

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Tabula Microcebus: A transcriptomic cell atlas of mouse lemur, an emerging primate model organism

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High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

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A murine aging cell atlas reveals cell identity and tissue-specific trajectories of aging

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Ageing hallmarks exhibit organ-specific temporal signatures

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A molecular cell atlas of the human lung from single cell RNA sequencing

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Molecular hallmarks of heterochronic parabiosis at single-cell resolution

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Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory pro...

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Single-cell transcriptomic characterization of 20 organs and tissues from individual mice creates a Tabula Muris

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