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Development of a deep learning-based 1D convolutional neural network model for cross-species natural killer T cell identification using peripheral blood mononuclear cell single-cell RNA sequencing dat...
Author / Creator:Chokeshaiusaha, Kaj ; Sananmuang, Thanida ; Puthier, Denis ; Kedkovid, Roongtham
Publisher:India: Veterinary World
Journal title:Veterinary World, 2024-12, Vol.17 (12), p.2846-2857
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Drosophila Microbiota Modulates Host Metabolic Gene Expression via IMD/NF-κB Signaling
Author / Creator:Combe, Berra Erkosar ; Defaye, Arnaud ; Bozonnet, Noémie ; Puthier, Denis ; Royet, Julien ; Leulier, François
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014, Vol.9 (4), p.e94729
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Genetic Predisposition to the Mortality in Septic Shock Patients: From GWAS to the Identification of a Regulatory Variant Modulating the Activity of a CISH Enhancer
Author / Creator:Rosier, Florian ; Brisebarre, Audrey ; Dupuis, Claire ; Baaklini, Sabrina ; Puthier, Denis ; Brun, Christine ; Pradel, Lydie C. ; Rihet, Pascal ; Payen, Didier
Publisher:MDPI
Journal title:International journal of molecular sciences, 2021-05, Vol.22 (11), p.5852
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Anomaly detection in genomic catalogues using unsupervised multi-view autoencoders
Author / Creator:Ferré, Quentin ; Chèneby, Jeanne ; Puthier, Denis ; Capponi, Cécile ; Ballester, Benoît
Publisher:London: BioMed Central Ltd
Journal title:BMC bioinformatics, 2021-09, Vol.22 (1), p.1-26, Article 460
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Cross-species analysis of differential transcript usage in humans and chickens with fatty liver disease
Author / Creator:Chokeshaiusaha, Kaj ; Sananmuang, Thanida ; Puthier, Denis ; Nguyen, Catherine
Publisher:India: Veterinary World
Journal title:Veterinary World, 2023-09, Vol.16 (9), p.1964-1973
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A novel cross-species differential tumor classification method based on exosome-derived microRNA biomarkers established by human-dog lymphoid and mammary tumor cell lines' transcription profiles
Author / Creator:Chokeshaiusaha, Kaj ; Sananmuang, Thanida ; Puthier, Denis ; Nguyen, Catherine
Publisher:India: Veterinary World
Journal title:Veterinary World, 2022-05, Vol.15 (5), p.1163-1170
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A demonstration of the H3 trimethylation ChIP-seq analysis of galline follicular mesenchymal cells and male germ cells
Author / Creator:Chokeshaiusaha, Kaj ; Puthier, Denis ; Nguyen, Catherine ; Sananmuang, Thanida
Publisher:Korea (South): Asian - Australasian Association of Animal Production Societies
Journal title:Asian-australasian journal of animal sciences, 2018-06, Vol.31 (6), p.791-797
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Integration of high-throughput reporter assays identify a critical enhancer of the Ikzf1 gene
Author / Creator:Alomairi, Jaafar ; Molitor, Anne M. ; Sadouni, Nori ; Hussain, Saadat ; Torres, Magali ; Saadi, Wiam ; Dao, Lan T. M. ; Charbonnier, Guillaume ; Santiago-Algarra, David ; Andrau, Jean Christophe ; Puthier, Denis ; Sexton, Tom ; Spicuglia, Salvatore
Publisher:United States: Public Library of Science
Journal title:PloS one, 2020-05, Vol.15 (5), p.e0233191
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Identifying common and specific microRNAs expressed in peripheral blood mononuclear cell of type 1, type 2, and gestational diabetes mellitus patients
Author / Creator:Collares, Cristhianna VA ; Evangelista, Adriane F ; Xavier, Danilo J ; Rassi, Diane M ; Arns, Thais ; Foss-Freitas, Maria C ; Foss, Milton C ; Puthier, Denis ; Sakamoto-Hojo, Elza T ; Passos, Geraldo A ; Donadi, Eduardo A
Publisher:England: BioMed Central Ltd
Journal title:BMC research notes, 2013-11, Vol.6 (1), p.491-491, Article 491
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The Contribution of Multiplexing Single Cell RNA Sequencing in Acute Myeloid Leukemia
Author / Creator:Madaci, Lamia ; Gard, Charlyne ; Nin, Sébastien ; Venton, Geoffroy ; Rihet, Pascal ; Puthier, Denis ; Loriod, Béatrice ; Costello, Régis
Publisher:Switzerland: MDPI AG
Journal title:Diseases, 2023-07, Vol.11 (3), p.96
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A critical regulator of Bcl2 revealed by systematic transcript discovery of lncRNAs associated with T-cell differentiation
Author / Creator:Saadi, Wiam ; Kermezli, Yasmina ; Dao, Lan T. M. ; Mathieu, Evelyne ; Santiago-Algarra, David ; Manosalva, Iris ; Torres, Magali ; Belhocine, Mohamed ; Pradel, Lydie ; Loriod, Beatrice ; Aribi, Mourad ; Puthier, Denis ; Spicuglia, Salvatore
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-03, Vol.9 (1), p.4707, Article 4707
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Entropy Measures Quantify Global Splicing Disorders in Cancer
Author / Creator:Ritchie, William ; Granjeaud, Samuel ; Puthier, Denis ; Gautheret, Daniel
Publisher:United States: PLOS
Journal title:PLoS computational biology, 2008-03, Vol.4 (3), p.e1000011
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Single-Cell Transcriptome Analysis of Acute Myeloid Leukemia Cells Using Methanol Fixation and Cryopreservation
Author / Creator:Madaci, Lamia ; Gard, Charlyne ; Nin, Sébastien ; Sarrabay, Alexandre ; Baier, Céline ; Venton, Geoffroy ; Rihet, Pascal ; Puthier, Denis ; Loriod, Béatrice ; Costello, Régis
Publisher:Switzerland: MDPI AG
Journal title:Diseases, 2023-12, Vol.12 (1), p.1
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An innovative approach to predict immune-associated genes mutually targeted by cow and human milk microRNAs expression profiles
Author / Creator:Chokeshaiusaha, Kaj ; Sananmuang, Thanida ; Puthier, Denis ; Nguyen, Catherine
Publisher:India: Veterinary World
Journal title:Veterinary World, 2018-09, Vol.11 (9), p.1203-1209
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RNA-Guided Genomic Localization of H2A.L.2 Histone Variant
Author / Creator:Hoghoughi, Naghmeh ; Barral, Sophie ; Curtet, Sandrine ; Chuffart, Florent ; Charbonnier, Guillaume ; Puthier, Denis ; Buchou, Thierry ; Rousseaux, Sophie ; Khochbin, Saadi
Publisher:Switzerland: MDPI
Journal title:Cells (Basel, Switzerland), 2020-02, Vol.9 (2), p.474
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Differential DNA methylation analysis across the promoter regions using methylated DNA immunoprecipitation sequencing profiling of porcine loin muscle
Author / Creator:Chokeshaiusaha, Kaj ; Puthier, Denis ; Sananmuang, Thanida ; Olanratmanee, Em-on ; Nguyen, Catherine ; Kedkovid, Roongtham
Publisher:India: Veterinary World
Journal title:Veterinary World, 2020-06, Vol.13 (6), p.1113-1125
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Platelets Alter Gene Expression Profile in Human Brain Endothelial Cells in an In Vitro Model of Cerebral Malaria
Author / Creator:Barbier, Mathieu ; Faille, Dorothée ; Loriod, Béatrice ; Textoris, Julien ; Camus, Claire ; Puthier, Denis ; Flori, Laurence ; Wassmer, Samuel Crocodile ; Victorero, Geneviève ; Alessi, Marie-Christine ; Fusaï, Thierry ; Nguyen, Catherine ; Grau, Georges E. ; Rihet, Pascal
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-05, Vol.6 (5), p.e19651
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TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks
Author / Creator:Lepoivre, Cyrille ; Bergon, Aurélie ; Lopez, Fabrice ; Perumal, Narayanan B ; Nguyen, Catherine ; Imbert, Jean ; Puthier, Denis
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2012-01, Vol.13 (1), p.19-19, Article 19
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Gene expression analysis reveals early changes in several molecular pathways in cerebral malaria-susceptible mice versus cerebral malaria-resistant mice
Author / Creator:Delahaye, Nicolas F ; Coltel, Nicolas ; Puthier, Denis ; Barbier, Mathieu ; Benech, Philippe ; Joly, Florence ; Iraqi, Fuad A ; Grau, Georges E ; Nguyen, Catherine ; Rihet, Pascal
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2007-12, Vol.8 (1), p.452-452, Article 452
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TranscriptomeBrowser: A Powerful and Flexible Toolbox to Explore Productively the Transcriptional Landscape of the Gene Expression Omnibus Database
Author / Creator:Lopez, Fabrice ; Textoris, Julien ; Bergon, Aurélie ; Didier, Gilles ; Remy, Elisabeth ; Granjeaud, Samuel ; Imbert, Jean ; Nguyen, Catherine ; Puthier, Denis
Publisher:United States: Public Library of Science
Journal title:PloS one, 2008-12, Vol.3 (12), p.e4001-e4001
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Development of a deep learning-based 1D convolutional neural network model for cross-species natural killer T cell identification using peripheral blood mononuclear cell single-cell RNA sequencing dat...

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Drosophila Microbiota Modulates Host Metabolic Gene Expression via IMD/NF-κB Signaling

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Genetic Predisposition to the Mortality in Septic Shock Patients: From GWAS to the Identification of a Regulatory Variant Modulating the Activity of a CISH Enhancer

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Anomaly detection in genomic catalogues using unsupervised multi-view autoencoders

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Cross-species analysis of differential transcript usage in humans and chickens with fatty liver disease

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A novel cross-species differential tumor classification method based on exosome-derived microRNA biomarkers established by human-dog lymphoid and mammary tumor cell lines' transcription profiles

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A demonstration of the H3 trimethylation ChIP-seq analysis of galline follicular mesenchymal cells and male germ cells

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Integration of high-throughput reporter assays identify a critical enhancer of the Ikzf1 gene

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Identifying common and specific microRNAs expressed in peripheral blood mononuclear cell of type 1, type 2, and gestational diabetes mellitus patients

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The Contribution of Multiplexing Single Cell RNA Sequencing in Acute Myeloid Leukemia

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A critical regulator of Bcl2 revealed by systematic transcript discovery of lncRNAs associated with T-cell differentiation

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Entropy Measures Quantify Global Splicing Disorders in Cancer

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Single-Cell Transcriptome Analysis of Acute Myeloid Leukemia Cells Using Methanol Fixation and Cryopreservation

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An innovative approach to predict immune-associated genes mutually targeted by cow and human milk microRNAs expression profiles

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RNA-Guided Genomic Localization of H2A.L.2 Histone Variant

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Differential DNA methylation analysis across the promoter regions using methylated DNA immunoprecipitation sequencing profiling of porcine loin muscle

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Platelets Alter Gene Expression Profile in Human Brain Endothelial Cells in an In Vitro Model of Cerebral Malaria

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TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks

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Gene expression analysis reveals early changes in several molecular pathways in cerebral malaria-susceptible mice versus cerebral malaria-resistant mice

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TranscriptomeBrowser: A Powerful and Flexible Toolbox to Explore Productively the Transcriptional Landscape of the Gene Expression Omnibus Database

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