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ArticlesPeer ReviewedFull Text
Succession and Replacement of Bacterial Populations in the Caecum of Egg Laying Hens over Their Whole Life
Author / Creator:Videnska, Petra ; Sedlar, Karel ; Lukac, Maja ; Faldynova, Marcela ; Gerzova, Lenka ; Cejkova, Darina ; Sisak, Frantisek ; Rychlik, Ivan
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-12, Vol.9 (12), p.e115142-e115142
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Stool sampling and DNA isolation kits affect DNA quality and bacterial composition following 16S rRNA gene sequencing using MiSeq Illumina platform
Author / Creator:Videnska, Petra ; Smerkova, Kristyna ; Zwinsova, Barbora ; Popovici, Vlad ; Micenkova, Lenka ; Sedlar, Karel ; Budinska, Eva
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-09, Vol.9 (1), p.13837-14, Article 13837
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Acidogenesis, solventogenesis, metabolic stress response and life cycle changes in Clostridium beijerinckii NRRL B-598 at the transcriptomic level
Author / Creator:Patakova, Petra ; Branska, Barbora ; Sedlar, Karel ; Vasylkivska, Maryna ; Jureckova, Katerina ; Kolek, Jan ; Koscova, Pavlina ; Provaznik, Ivo
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-02, Vol.9 (1), p.1371-1371, Article 1371
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Rapid high-resolution melting genotyping scheme for Escherichia coli based on MLST derived single nucleotide polymorphisms
Author / Creator:Bezdicek, Matej ; Nykrynova, Marketa ; Sedlar, Karel ; Kralova, Stanislava ; Hanslikova, Jana ; Komprdova, Aja ; Skutkova, Helena ; Kocmanova, Iva ; Mayer, Jiri ; Lengerova, Martina
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-08, Vol.11 (1), p.16572-16572, Article 16572
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Novel thermophilic polyhydroxyalkanoates producing strain Aneurinibacillus thermoaerophilus CCM 8960
Author / Creator:Musilova, Jana ; Kourilova, Xenie ; Pernicova, Iva ; Bezdicek, Matej ; Lengerova, Martina ; Obruca, Stanislav ; Sedlar, Karel
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Applied microbiology and biotechnology, 2022-06, Vol.106 (12), p.4669-4681
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Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598
Author / Creator:Vasylkivska, Maryna ; Jureckova, Katerina ; Branska, Barbora ; Sedlar, Karel ; Kolek, Jan ; Provaznik, Ivo ; Patakova, Petra
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-11, Vol.14 (11), p.e0224560-e0224560
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Application of mini-MLST and whole genome sequencing in low diversity hospital extended-spectrum beta-lactamase producing Klebsiella pneumoniae population
Author / Creator:Bezdicek, Matej ; Nykrynova, Marketa ; Plevova, Kristina ; Brhelova, Eva ; Kocmanova, Iva ; Sedlar, Karel ; Racil, Zdenek ; Mayer, Jiri ; Lengerova, Martina
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-08, Vol.14 (8), p.e0221187-e0221187
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Characterization of Microbiota Composition and Presence of Selected Antibiotic Resistance Genes in Carriage Water of Ornamental Fish
Author / Creator:Gerzova, Lenka ; Videnska, Petra ; Faldynova, Marcela ; Sedlar, Karel ; Provaznik, Ivo ; Cizek, Alois ; Rychlik, Ivan
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-08, Vol.9 (8), p.e103865-e103865
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Characterization of Egg Laying Hen and Broiler Fecal Microbiota in Poultry Farms in Croatia, Czech Republic, Hungary and Slovenia
Author / Creator:Videnska, Petra ; Rahman, Md. Masudur ; Faldynova, Marcela ; Babak, Vladimir ; Matulova, Marta Elsheimer ; Prukner-Radovcic, Estella ; Krizek, Ivan ; Smole-Mozina, Sonja ; Kovac, Jasna ; Szmolka, Ama ; Nagy, Bela ; Sedlar, Karel ; Cejkova, Darina ; Rychlik, Ivan
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-10, Vol.9 (10), p.e110076-e110076
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Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq
Author / Creator:Sedlar, Karel ; Koscova, Pavlina ; Vasylkivska, Maryna ; Branska, Barbora ; Kolek, Jan ; Kupkova, Kristyna ; Patakova, Petra ; Provaznik, Ivo
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2018-05, Vol.19 (1), p.415-415, Article 415
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Seasonal changes in microbial community composition in river water studied using 454-pyrosequencing
Author / Creator:Kaevska, Marija ; Videnska, Petra ; Sedlar, Karel ; Slana, Iva
Publisher:Cham: Springer International Publishing
Journal title:SpringerPlus, 2016-04, Vol.5 (1), p.409-409, Article 409
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Characterization of Antibiotic Resistance Gene Abundance and Microbiota Composition in Feces of Organic and Conventional Pigs from Four EU Countries
Author / Creator:Gerzova, Lenka ; Babak, Vladimir ; Sedlar, Karel ; Faldynova, Marcela ; Videnska, Petra ; Cejkova, Darina ; Jensen, Annette Nygaard ; Denis, Martine ; Kerouanton, Annaelle ; Ricci, Antonia ; Cibin, Veronica ; Österberg, Julia ; Rychlik, Ivan
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-07, Vol.10 (7), p.e0132892-e0132892
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Deeper below the surface—transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock
Author / Creator:Patakova, Petra ; Kolek, Jan ; Jureckova, Katerina ; Branska, Barbora ; Sedlar, Karel ; Vasylkivska, Maryna ; Provaznik, Ivo
Publisher:England: John Wiley & Sons, Inc
Journal title:MicrobiologyOpen (Weinheim), 2021-01, Vol.10 (1), p.e1146-n/a
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ArticlesPeer ReviewedFull Text
Bipartite Graphs for Visualization Analysis of Microbiome Data
Author / Creator:Sedlar, Karel ; Videnska, Petra ; Skutkova, Helena ; Rychlik, Ivan ; Provaznik, Ivo
Publisher:United States: Libertas Academica
Journal title:Evolutionary Bioinformatics, 2016-05, Vol.2016 (S1), p.17-23
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Tools for time-course simulation in systems biology: a brief overview
Author / Creator:Musilova, Jana ; Sedlar, Karel
Publisher:England
Journal title:Briefings in bioinformatics, 2021-09, Vol.22 (5)
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A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock
Author / Creator:Sedlar, Karel ; Kolek, Jan ; Gruber, Markus ; Jureckova, Katerina ; Branska, Barbora ; Csaba, Gergely ; Vasylkivska, Maryna ; Zimmer, Ralf ; Patakova, Petra ; Provaznik, Ivo
Publisher:England: BioMed Central Ltd
Journal title:Biotechnology for biofuels, 2019-10, Vol.12 (1), p.243-243, Article 243
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The First Insight into Polyhydroxyalkanoates Accumulation in Multi-Extremophilic Rubrobacter xylanophilus and Rubrobacter spartanus
Author / Creator:Kouřilová, Xenie ; Schwarzerová, Jana ; Pernicová, Iva ; Sedlář, Karel ; Mrázová, Kateřina ; Krzyžánek, Vladislav ; Nebesářová, Jana ; Obruča, Stanislav
Publisher:Switzerland: MDPI AG
Journal title:Microorganisms (Basel), 2021-04, Vol.9 (5), p.909
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Characterisation of Waterborne Psychrophilic Massilia Isolates with Violacein Production and Description of Massilia antarctica sp. nov
Author / Creator:Sedláček, Ivo ; Holochová, Pavla ; Busse, Hans-Jürgen ; Koublová, Vendula ; Králová, Stanislava ; Švec, Pavel ; Sobotka, Roman ; Staňková, Eva ; Pilný, Jan ; Šedo, Ondrej ; Smolíková, Jana ; Sedlář, Karel
Publisher:Switzerland: MDPI AG
Journal title:Microorganisms (Basel), 2022-03, Vol.10 (4), p.704
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Changes in efflux pump activity of Clostridium beijerinckii throughout ABE fermentation
Author / Creator:Branska, Barbora ; Vasylkivska, Maryna ; Raschmanova, Hana ; Jureckova, Katerina ; Sedlar, Karel ; Provaznik, Ivo ; Patakova, Petra
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:Applied microbiology and biotechnology, 2021-01, Vol.105 (2), p.877-889
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Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling
Author / Creator:Snopkova, Katerina ; Sedlar, Karel ; Bosak, Juraj ; Chaloupkova, Eva ; Sedlacek, Ivo ; Provaznik, Ivo ; Smajs, David
Publisher:London, England: SAGE Publications
Journal title:Evolutionary bioinformatics online, 2017-03, Vol.13, p.1176934317700863
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Showing 1 to 20 of 30 results

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Succession and Replacement of Bacterial Populations in the Caecum of Egg Laying Hens over Their Whole Life

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Stool sampling and DNA isolation kits affect DNA quality and bacterial composition following 16S rRNA gene sequencing using MiSeq Illumina platform

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Acidogenesis, solventogenesis, metabolic stress response and life cycle changes in Clostridium beijerinckii NRRL B-598 at the transcriptomic level

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Rapid high-resolution melting genotyping scheme for Escherichia coli based on MLST derived single nucleotide polymorphisms

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Novel thermophilic polyhydroxyalkanoates producing strain Aneurinibacillus thermoaerophilus CCM 8960

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Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598

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Application of mini-MLST and whole genome sequencing in low diversity hospital extended-spectrum beta-lactamase producing Klebsiella pneumoniae population

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Characterization of Microbiota Composition and Presence of Selected Antibiotic Resistance Genes in Carriage Water of Ornamental Fish

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Characterization of Egg Laying Hen and Broiler Fecal Microbiota in Poultry Farms in Croatia, Czech Republic, Hungary and Slovenia

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Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq

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Seasonal changes in microbial community composition in river water studied using 454-pyrosequencing

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Characterization of Antibiotic Resistance Gene Abundance and Microbiota Composition in Feces of Organic and Conventional Pigs from Four EU Countries

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Deeper below the surface—transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock

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Bipartite Graphs for Visualization Analysis of Microbiome Data

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Tools for time-course simulation in systems biology: a brief overview

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A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock

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The First Insight into Polyhydroxyalkanoates Accumulation in Multi-Extremophilic Rubrobacter xylanophilus and Rubrobacter spartanus

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Characterisation of Waterborne Psychrophilic Massilia Isolates with Violacein Production and Description of Massilia antarctica sp. nov

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Changes in efflux pump activity of Clostridium beijerinckii throughout ABE fermentation

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Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling

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