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120 results for Sharan,+Roded

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ArticlesPeer ReviewedFull Text
Network propagation: a universal amplifier of genetic associations
Author / Creator:Cowen, Lenore ; Ideker, Trey ; Raphael, Benjamin J. ; Sharan, Roded
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Genetics, 2017-09, Vol.18 (9), p.551-562
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A systematic approach to orient the human protein–protein interaction network
Author / Creator:Silverbush, Dana ; Sharan, Roded
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-07, Vol.10 (1), p.3015-9, Article 3015
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Using deep learning to model the hierarchical structure and function of a cell
Author / Creator:Ma, Jianzhu ; Yu, Michael Ku ; Fong, Samson ; Ono, Keiichiro ; Sage, Eric ; Demchak, Barry ; Sharan, Roded ; Ideker, Trey
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2018-04, Vol.15 (4), p.290-298
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Associating Genes and Protein Complexes with Disease via Network Propagation
Author / Creator:Vanunu, Oron ; Magger, Oded ; Ruppin, Eytan ; Shlomi, Tomer ; Sharan, Roded
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2010-01, Vol.6 (1), p.e1000641
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PREDICT: a method for inferring novel drug indications with application to personalized medicine
Author / Creator:Gottlieb, Assaf ; Stein, Gideon Y ; Ruppin, Eytan ; Sharan, Roded
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2011-06, Vol.7 (1), p.496-n/a
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INDI: a computational framework for inferring drug interactions and their associated recommendations
Author / Creator:Gottlieb, Assaf ; Stein, Gideon Y ; Oron, Yoram ; Ruppin, Eytan ; Sharan, Roded
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2012-07, Vol.8 (1), p.592-n/a
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The first enhancer in an enhancer chain safeguards subsequent enhancer-promoter contacts from a distance
Author / Creator:Song, Wei ; Sharan, Roded ; Ovcharenko, Ivan
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2019-09, Vol.20 (1), p.197-197, Article 197
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Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect
Author / Creator:Shlomi, Tomer ; Benyamini, Tomer ; Gottlieb, Eyal ; Sharan, Roded ; Ruppin, Eytan
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2011-03, Vol.7 (3), p.e1002018
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Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer
Author / Creator:Ruffalo, Matthew ; Koyutürk, Mehmet ; Sharan, Roded
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2015-12, Vol.11 (12), p.e1004595-e1004595
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Simultaneous Identification of Multiple Driver Pathways in Cancer
Author / Creator:Leiserson, Mark D. M. ; Blokh, Dima ; Sharan, Roded ; Raphael, Benjamin J.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2013-05, Vol.9 (5), p.e1003054
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Competitive and cooperative metabolic interactions in bacterial communities
Author / Creator:Freilich, Shiri ; Zarecki, Raphy ; Eilam, Omer ; Segal, Ella Shtifman ; Henry, Christopher S. ; Kupiec, Martin ; Gophna, Uri ; Sharan, Roded ; Ruppin, Eytan
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2011-12, Vol.2 (1), p.589, Article 589
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Enhancing the Prioritization of Disease-Causing Genes through Tissue Specific Protein Interaction Networks
Author / Creator:Magger, Oded ; Waldman, Yedael Y. ; Ruppin, Eytan ; Sharan, Roded
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2012-09, Vol.8 (9), p.e1002690
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A mutation-level covariate model for mutational signatures
Author / Creator:Kahane, Itay ; Leiserson, Mark D. M. ; Sharan, Roded
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2023-06, Vol.19 (6), p.e1011195
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Genome architecture and stability in the Saccharomyces cerevisiae knockout collection
Author / Creator:Puddu, Fabio ; Herzog, Mareike ; Selivanova, Alexandra ; Wang, Siyue ; Zhu, Jin ; Klein-Lavi, Shir ; Gordon, Molly ; Meirman, Roi ; Millan-Zambrano, Gonzalo ; Ayestaran, Iñigo ; Salguero, Israel ; Sharan, Roded ; Li, Rong ; Kupiec, Martin ; Jackson, Stephen P.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2019-09, Vol.573 (7774), p.416-420
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Effect of SARS-CoV-2 proteins on vascular permeability
Author / Creator:Rauti, Rossana ; Shahoha, Meishar ; Leichtmann-Bardoogo, Yael ; Nasser, Rami ; Paz, Eyal ; Tamir, Rina ; Miller, Victoria ; Babich, Tal ; Shaked, Kfir ; Ehrlich, Avner ; Ioannidis, Konstantinos ; Nahmias, Yaakov ; Sharan, Roded ; Ashery, Uri ; Maoz, Ben Meir
Publisher:Cambridge: eLife Science Publications, Ltd
Journal title:eLife, 2021-10, Vol.10
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A genome‐scale computational study of the interplay between transcriptional regulation and metabolism
Author / Creator:Shlomi, Tomer ; Eisenberg, Yariv ; Sharan, Roded ; Ruppin, Eytan
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2007, Vol.3 (1), p.101-n/a
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An Algorithmic Framework for Predicting Side Effects of Drugs
Author / Creator:Atias, Nir ; Sharan, Roded
Publisher:United States: Mary Ann Liebert, Inc
Journal title:Journal of computational biology, 2011-03, Vol.18 (3), p.207-218
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ArticlesPeer ReviewedFull Text
ANAT 2.0: reconstructing functional protein subnetworks
Author / Creator:Almozlino, Yomtov ; Atias, Nir ; Silverbush, Dana ; Sharan, Roded
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2017-11, Vol.18 (1), p.495-5, Article 495
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A data-driven approach for constructing mutation categories for mutational signature analysis
Author / Creator:Gilad, Gal ; Leiserson, Mark D. M. ; Sharan, Roded
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2021-10, Vol.17 (10), p.e1009542
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A network diffusion approach to inferring sample-specific function reveals functional changes associated with breast cancer
Author / Creator:Patkar, Sushant ; Magen, Assaf ; Sharan, Roded ; Hannenhalli, Sridhar
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2017-11, Vol.13 (11), p.e1005793
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Network propagation: a universal amplifier of genetic associations

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A systematic approach to orient the human protein–protein interaction network

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Using deep learning to model the hierarchical structure and function of a cell

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Associating Genes and Protein Complexes with Disease via Network Propagation

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PREDICT: a method for inferring novel drug indications with application to personalized medicine

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INDI: a computational framework for inferring drug interactions and their associated recommendations

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The first enhancer in an enhancer chain safeguards subsequent enhancer-promoter contacts from a distance

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Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect

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Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer

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Simultaneous Identification of Multiple Driver Pathways in Cancer

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Competitive and cooperative metabolic interactions in bacterial communities

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Enhancing the Prioritization of Disease-Causing Genes through Tissue Specific Protein Interaction Networks

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A mutation-level covariate model for mutational signatures

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Genome architecture and stability in the Saccharomyces cerevisiae knockout collection

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Effect of SARS-CoV-2 proteins on vascular permeability

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A genome‐scale computational study of the interplay between transcriptional regulation and metabolism

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An Algorithmic Framework for Predicting Side Effects of Drugs

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ANAT 2.0: reconstructing functional protein subnetworks

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A data-driven approach for constructing mutation categories for mutational signature analysis

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A network diffusion approach to inferring sample-specific function reveals functional changes associated with breast cancer

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