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206 results for Shyr,+Yu

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ArticlesPeer ReviewedFull Text
Advanced Heat Map and Clustering Analysis Using Heatmap3
Author / Creator:Zhao, Shilin ; Guo, Yan ; Sheng, Quanhu ; Shyr, Yu
Publisher:Cairo, Egypt: Hindawi Puplishing Corporation
Journal title:BioMed research international, 2014-01, Vol.2014 (2014), p.1-6
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Aberrant FGFR signaling mediates resistance to CDK4/6 inhibitors in ER+ breast cancer
Author / Creator:Formisano, Luigi ; Lu, Yao ; Servetto, Alberto ; Hanker, Ariella B. ; Jansen, Valerie M. ; Bauer, Joshua A. ; Sudhan, Dhivya R. ; Guerrero-Zotano, Angel L. ; Croessmann, Sarah ; Guo, Yan ; Ericsson, Paula Gonzalez ; Lee, Kyung-min ; Nixon, Mellissa J. ; Schwarz, Luis J. ; Sanders, Melinda E. ; Dugger, Teresa C. ; Cruz, Marcelo Rocha ; Behdad, Amir ; Cristofanilli, Massimo ; Bardia, Aditya ; O’Shaughnessy, Joyce ; Nagy, Rebecca J. ; Lanman, Richard B. ; Solovieff, Nadia ; He, Wei ; Miller, Michelle ; Su, Fei ; Shyr, Yu ; Mayer, Ingrid A. ; Balko, Justin M. ; Arteaga, Carlos L.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-03, Vol.10 (1), p.1373-1373, Article 1373
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aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph
Author / Creator:Li, Jia ; Shyr, Yu ; Liu, Qi
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2024-08, Vol.25 (1), p.203-203, Article 203
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Refinement of Triple-Negative Breast Cancer Molecular Subtypes: Implications for Neoadjuvant Chemotherapy Selection
Author / Creator:Lehmann, Brian D. ; Jovanović, Bojana ; Chen, Xi ; Estrada, Monica V. ; Johnson, Kimberly N. ; Shyr, Yu ; Moses, Harold L. ; Sanders, Melinda E. ; Pietenpol, Jennifer A.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-06, Vol.11 (6), p.e0157368-e0157368
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Identification of human triple-negative breast cancer subtypes and preclinical models for selection of targeted therapies
Author / Creator:Lehmann, Brian D. ; Bauer, Joshua A. ; Chen, Xi ; Sanders, Melinda E. ; Chakravarthy, A. Bapsi ; Shyr, Yu ; Pietenpol, Jennifer A.
Publisher:United States: American Society for Clinical Investigation
Journal title:The Journal of clinical investigation, 2011-07, Vol.121 (7), p.2750-2767
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Illumina human exome genotyping array clustering and quality control
Author / Creator:Guo, Yan ; He, Jing ; Zhao, Shilin ; Wu, Hui ; Zhong, Xue ; Sheng, Quanhu ; Samuels, David C ; Shyr, Yu ; Long, Jirong
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2014-11, Vol.9 (11), p.2643-2662
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Melanoma-specific MHC-II expression represents a tumour-autonomous phenotype and predicts response to anti-PD-1/PD-L1 therapy
Author / Creator:Johnson, Douglas B. ; Estrada, Monica V. ; Salgado, Roberto ; Sanchez, Violeta ; Doxie, Deon B. ; Opalenik, Susan R. ; Vilgelm, Anna E. ; Feld, Emily ; Johnson, Adam S. ; Greenplate, Allison R. ; Sanders, Melinda E. ; Lovly, Christine M. ; Frederick, Dennie T. ; Kelley, Mark C. ; Richmond, Ann ; Irish, Jonathan M. ; Shyr, Yu ; Sullivan, Ryan J. ; Puzanov, Igor ; Sosman, Jeffrey A. ; Balko, Justin M.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-01, Vol.7 (1), p.10582-10582, Article 10582
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Large Scale Comparison of Gene Expression Levels by Microarrays and RNAseq Using TCGA Data
Author / Creator:Guo, Yan ; Sheng, Quanhu ; Li, Jiang ; Ye, Fei ; Samuels, David C. ; Shyr, Yu
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-08, Vol.8 (8), p.e71462-e71462
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Dysregulated transcription across diverse cancer types reveals the importance of RNA-binding protein in carcinogenesis
Author / Creator:Wang, Jing ; Liu, Qi ; Shyr, Yu
Publisher:England: BioMed Central
Journal title:BMC genomics, 2015-06, Vol.16 (S7), p.S5-S5, Article S5
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Survival in BRAF V600–Mutant Advanced Melanoma Treated with Vemurafenib
Author / Creator:Sosman, Jeffrey A ; Kim, Kevin B ; Schuchter, Lynn ; Gonzalez, Rene ; Pavlick, Anna C ; Weber, Jeffrey S ; McArthur, Grant A ; Hutson, Thomas E ; Moschos, Stergios J ; Flaherty, Keith T ; Hersey, Peter ; Kefford, Richard ; Lawrence, H. Jeffrey ; Lawrence, Donald ; Puzanov, Igor ; Lewis, Karl D ; Amaravadi, Ravi K ; Chmielowski, Bartosz ; Shyr, Yu ; Ye, Fei ; Li, Jiang ; Nolop, Keith B ; Lee, Richard J ; Joe, Andrew K ; Ribas, Antoni
Publisher:Waltham, MA: Massachusetts Medical Society
Journal title:The New England journal of medicine, 2012-02, Vol.366 (8), p.707-714
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ArticlesPeer ReviewedFull Text
RnaSeqSampleSize: real data based sample size estimation for RNA sequencing
Author / Creator:Zhao, Shilin ; Li, Chung-I ; Guo, Yan ; Sheng, Quanhu ; Shyr, Yu
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2018-05, Vol.19 (1), p.191-191, Article 191
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Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation
Author / Creator:Wang, Jing ; Zhao, Yue ; Zhou, Xiaofan ; Hiebert, Scott W. ; Liu, Qi ; Shyr, Yu
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2018-08, Vol.19 (1), p.633-633, Article 633
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ArticlesPeer ReviewedFull Text
FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing
Author / Creator:Chen, Hua-Chang ; Wang, Jing ; Shyr, Yu ; Liu, Qi
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2024-01, Vol.20 (1), p.e1011786-e1011786
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Expression of CCL2/CCR2 signaling proteins in breast carcinoma cells is associated with invasive progression
Author / Creator:Fang, Wei Bin ; Sofia Acevedo, Diana ; Smart, Curtis ; Zinda, Brandon ; Alissa, Nadia ; Warren, Kyle ; Fraga, Garth ; Huang, Li-Ching ; Shyr, Yu ; Li, Wei ; Xie, Lu ; Staggs, Vincent ; Hong, Yan ; Behbod, Fariba ; Cheng, Nikki
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-04, Vol.11 (1), p.8708-8708, Article 8708
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Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data
Author / Creator:Liu, Qi ; Guo, Yan ; Li, Jiang ; Long, Jirong ; Zhang, Bing ; Shyr, Yu
Publisher:England: BioMed Central
Journal title:BMC genomics, 2012, Vol.13 (S8), p.S8-S8, Article S8
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Power and sample sizes estimation in clinical trials with treatment switching in intention-to-treat analysis: a simulation study
Author / Creator:Deng, Lejun ; Hsu, Chih-Yuan ; Shyr, Yu
Publisher:England: BioMed Central Ltd
Journal title:BMC medical research methodology, 2023-02, Vol.23 (1), p.49-49, Article 49
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Strategies for processing and quality control of Illumina genotyping arrays
Author / Creator:Zhao, Shilin ; Jing, Wang ; Samuels, David C ; Sheng, Quanghu ; Shyr, Yu ; Guo, Yan
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2018-09, Vol.19 (5), p.765-775
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The effect of strand bias in Illumina short-read sequencing data
Author / Creator:Guo, Yan ; Li, Jiang ; Li, Chung-I ; Long, Jirong ; Samuels, David C ; Shyr, Yu
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2012-11, Vol.13 (1), p.666-666, Article 666
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Designing a Hybrid Equipment-Failure Diagnosis Mechanism under Mixed-Type Data with Limited Failure Samples
Author / Creator:Chen, Cheng-Hui ; Tsung, Chen-Kun ; Yu, Shyr-Shen
Publisher:Basel: MDPI AG
Journal title:Applied sciences, 2022-09, Vol.12 (18), p.9286
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Hyperactivation of phosphatidylinositol-3 kinase promotes escape from hormone dependence in estrogen receptor–positive human breast cancer
Author / Creator:Miller, Todd W. ; Hennessy, Bryan T. ; González-Angulo, Ana M. ; Fox, Emily M. ; Mills, Gordon B. ; Chen, Heidi ; Higham, Catherine ; García-Echeverría, Carlos ; Shyr, Yu ; Arteaga, Carlos L.
Publisher:United States: American Society for Clinical Investigation
Journal title:The Journal of clinical investigation, 2010-07, Vol.120 (7), p.2406-2413
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Showing 1 to 20 of 206 results

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Advanced Heat Map and Clustering Analysis Using Heatmap3

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Aberrant FGFR signaling mediates resistance to CDK4/6 inhibitors in ER+ breast cancer

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aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph

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Refinement of Triple-Negative Breast Cancer Molecular Subtypes: Implications for Neoadjuvant Chemotherapy Selection

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Identification of human triple-negative breast cancer subtypes and preclinical models for selection of targeted therapies

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Illumina human exome genotyping array clustering and quality control

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Melanoma-specific MHC-II expression represents a tumour-autonomous phenotype and predicts response to anti-PD-1/PD-L1 therapy

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Large Scale Comparison of Gene Expression Levels by Microarrays and RNAseq Using TCGA Data

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Dysregulated transcription across diverse cancer types reveals the importance of RNA-binding protein in carcinogenesis

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Survival in BRAF V600–Mutant Advanced Melanoma Treated with Vemurafenib

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RnaSeqSampleSize: real data based sample size estimation for RNA sequencing

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Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation

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FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing

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Expression of CCL2/CCR2 signaling proteins in breast carcinoma cells is associated with invasive progression

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Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data

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Power and sample sizes estimation in clinical trials with treatment switching in intention-to-treat analysis: a simulation study

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Strategies for processing and quality control of Illumina genotyping arrays

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The effect of strand bias in Illumina short-read sequencing data

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Designing a Hybrid Equipment-Failure Diagnosis Mechanism under Mixed-Type Data with Limited Failure Samples

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Hyperactivation of phosphatidylinositol-3 kinase promotes escape from hormone dependence in estrogen receptor–positive human breast cancer

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