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ArticlesPeer ReviewedFull Text
Evolution of the immune system influences speciation rates in teleost fishes
Author / Creator:Malmstrøm, Martin ; Matschiner, Michael ; Tørresen, Ole K ; Star, Bastiaan ; Snipen, Lars G ; Hansen, Thomas F ; Baalsrud, Helle T ; Nederbragt, Alexander J ; Hanel, Reinhold ; Salzburger, Walter ; Stenseth, Nils C ; Jakobsen, Kjetill S ; Jentoft, Sissel
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2016-10, Vol.48 (10), p.1204-1210
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METASEED: a novel approach to full-length 16S rRNA gene reconstruction from short read data
Author / Creator:Philip, Melcy ; Rudi, Knut ; Ormaasen, Ida ; Angell, Inga Leena ; Pettersen, Ragnhild ; Keeley, Nigel B. ; Snipen, Lars-Gustav
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2024-07, Vol.25 (1), p.237-16, Article 237
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HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data
Author / Creator:Hiseni, Pranvera ; Rudi, Knut ; Wilson, Robert C. ; Hegge, Finn Terje ; Snipen, Lars
Publisher:London: BioMed Central
Journal title:Microbiome, 2021-07, Vol.9 (1), p.1-12, Article 165
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Metagenome-mining indicates an association between bacteriocin presence and strain diversity in the infant gut
Author / Creator:Ormaasen, Ida ; Rudi, Knut ; Diep, Dzung B. ; Snipen, Lars
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2023-05, Vol.24 (1), p.295-12, Article 295
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Transcriptomic and Functional Analysis of NaCl-Induced Stress in Enterococcus faecalis
Author / Creator:Solheim, Margrete ; La Rosa, Sabina Leanti ; Mathisen, Thomas ; Snipen, Lars G. ; Nes, Ingolf F. ; Brede, Dag Anders
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-04, Vol.9 (4), p.e94571
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Reduced metagenome sequencing for strain-resolution taxonomic profiles
Author / Creator:Snipen, Lars ; Angell, Inga-Leena ; Rognes, Torbjørn ; Rudi, Knut
Publisher:England: BioMed Central
Journal title:Microbiome, 2021-03, Vol.9 (1), p.79-79, Article 79
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Comparative genomics of Enterococcus faecalis from healthy Norwegian infants
Author / Creator:Solheim, Margrete ; Aakra, Ågot ; Snipen, Lars G ; Brede, Dag A ; Nes, Ingolf F
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2009-04, Vol.10 (1), p.194-194
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Butyrate Levels in the Transition from an Infant- to an Adult-Like Gut Microbiota Correlate with Bacterial Networks Associated with Eubacterium Rectale and Ruminococcus Gnavus
Author / Creator:Nilsen, Morten ; Madelen Saunders, Carina ; Leena Angell, Inga ; Arntzen, Magnus Ø. ; Lødrup Carlsen, Karin C. ; Carlsen, Kai-Håkon ; Haugen, Guttorm ; Heldal Hagen, Live ; Carlsen, Monica H. ; Hedlin, Gunilla ; Monceyron Jonassen, Christine ; Nordlund, Björn ; Maria Rehbinder, Eva ; Skjerven, Håvard O. ; Snipen, Lars ; Cathrine Staff, Anne ; Vettukattil, Riyas ; Rudi, Knut
Publisher:MDPI AG
Journal title:Genes, 2020-11, Vol.11 (11), p.1245
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Comparing K-mer based methods for improved classification of 16S sequences
Author / Creator:Vinje, Hilde ; Liland, Kristian Hovde ; Almøy, Trygve ; Snipen, Lars
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2015-07, Vol.16 (1), p.205-205, Article 205
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Microbial comparative pan-genomics using binomial mixture models
Author / Creator:Snipen, Lars ; Almøy, Trygve ; Ussery, David W
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2009-08, Vol.10 (1), p.385-385
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Comparative genomic analysis reveals significant enrichment of mobile genetic elements and genes encoding surface structure-proteins in hospital-associated clonal complex 2 Enterococcus faecalis
Author / Creator:Solheim, Margrete ; Brekke, Mari C ; Snipen, Lars G ; Willems, Rob JL ; Nes, Ingolf F ; Brede, Dag A
Publisher:England: BioMed Central Ltd
Journal title:BMC microbiology, 2011-01, Vol.11 (1), p.3-3
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A Partial Least Squares based algorithm for parsimonious variable selection
Author / Creator:Mehmood, Tahir ; Martens, Harald ; Sæbø, Solve ; Warringer, Jonas ; Snipen, Lars
Publisher:England: BioMed Central Ltd
Journal title:Algorithms for molecular biology, 2011-12, Vol.6 (1), p.27-27, Article 27
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Global transcriptome response in Lactobacillus sakei during growth on ribose
Author / Creator:McLeod, Anette ; Snipen, Lars ; Naterstad, Kristine ; Axelsson, Lars
Publisher:England: BioMed Central Ltd
Journal title:BMC microbiology, 2011-06, Vol.11 (1), p.145-145
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Effects of glucose availability in Lactobacillus sakei; metabolic change and regulation of the proteome and transcriptome
Author / Creator:McLeod, Anette ; Mosleth, Ellen F. ; Rud, Ida ; Branco dos Santos, Filipe ; Snipen, Lars ; Liland, Kristian Hovde ; Axelsson, Lars
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-11, Vol.12 (11), p.e0187542-e0187542
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Comparative Genomic Analysis of Pathogenic and Probiotic Enterococcus faecalis Isolates, and Their Transcriptional Responses to Growth in Human Urine
Author / Creator:Vebø, Heidi C. ; Solheim, Margrete ; Snipen, Lars ; Nes, Ingolf F. ; Brede, Dag A.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2010-08, Vol.5 (8), p.e12489-e12489
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Genomic Characterization of Campylobacter jejuni Strain M1
Author / Creator:Friis, Carsten ; Wassenaar, Trudy M. ; Javed, Muhammad A. ; Snipen, Lars ; Lagesen, Karin ; Hallin, Peter F. ; Newell, Diane G. ; Toszeghy, Monique ; Ridley, Anne ; Manning, Georgina ; Ussery, David W.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2010-08, Vol.5 (8), p.e12253-e12253
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The Transcriptome of the Nosocomial Pathogen Enterococcus faecalis V583 Reveals Adaptive Responses to Growth in Blood
Author / Creator:Vebø, Heidi C. ; Snipen, Lars ; Nes, Ingolf F. ; Brede, Dag A.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2009-11, Vol.4 (11), p.e7660-e7660
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Analysis of intra-genomic GC content homogeneity within prokaryotes
Author / Creator:Bohlin, Jon ; Snipen, Lars ; Hardy, Simon P ; Kristoffersen, Anja B ; Lagesen, Karin ; Dønsvik, Torunn ; Skjerve, Eystein ; Ussery, David W
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2010-08, Vol.11 (1), p.464-464
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Mining for genotype-phenotype relations in Saccharomyces using partial least squares
Author / Creator:Mehmood, Tahir ; Martens, Harald ; Sæbø, Solve ; Warringer, Jonas ; Snipen, Lars
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2011-08, Vol.12 (1), p.318-318, Article 318
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Global Transcriptional Analysis of Spontaneous Sakacin P-Resistant Mutant Strains of Listeria monocytogenes during Growth on Different Sugars
Author / Creator:Tessema, Girum Tadesse ; Møretrø, Trond ; Snipen, Lars ; Axelsson, Lars ; Naterstad, Kristine
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-01, Vol.6 (1), p.e16192
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Showing 1 to 20 of 45 results

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Evolution of the immune system influences speciation rates in teleost fishes

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METASEED: a novel approach to full-length 16S rRNA gene reconstruction from short read data

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HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data

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Metagenome-mining indicates an association between bacteriocin presence and strain diversity in the infant gut

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Transcriptomic and Functional Analysis of NaCl-Induced Stress in Enterococcus faecalis

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Reduced metagenome sequencing for strain-resolution taxonomic profiles

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Comparative genomics of Enterococcus faecalis from healthy Norwegian infants

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Butyrate Levels in the Transition from an Infant- to an Adult-Like Gut Microbiota Correlate with Bacterial Networks Associated with Eubacterium Rectale and Ruminococcus Gnavus

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Comparing K-mer based methods for improved classification of 16S sequences

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Microbial comparative pan-genomics using binomial mixture models

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Comparative genomic analysis reveals significant enrichment of mobile genetic elements and genes encoding surface structure-proteins in hospital-associated clonal complex 2 Enterococcus faecalis

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A Partial Least Squares based algorithm for parsimonious variable selection

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Global transcriptome response in Lactobacillus sakei during growth on ribose

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Effects of glucose availability in Lactobacillus sakei; metabolic change and regulation of the proteome and transcriptome

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Comparative Genomic Analysis of Pathogenic and Probiotic Enterococcus faecalis Isolates, and Their Transcriptional Responses to Growth in Human Urine

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Genomic Characterization of Campylobacter jejuni Strain M1

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The Transcriptome of the Nosocomial Pathogen Enterococcus faecalis V583 Reveals Adaptive Responses to Growth in Blood

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Analysis of intra-genomic GC content homogeneity within prokaryotes

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Mining for genotype-phenotype relations in Saccharomyces using partial least squares

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Global Transcriptional Analysis of Spontaneous Sakacin P-Resistant Mutant Strains of Listeria monocytogenes during Growth on Different Sugars

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