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ArticlesPeer ReviewedFull Text
Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs
Author / Creator:Laurent, Jon M. ; Garge, Riddhiman K. ; Teufel, Ashley I. ; Wilke, Claus O. ; Kachroo, Aashiq H. ; Marcotte, Edward M.
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2020-05, Vol.18 (5), p.e3000627-e3000627
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Sicegar: R package for sigmoidal and double-sigmoidal curve fitting
Author / Creator:Caglar, M. Umut ; Teufel, Ashley I. ; Wilke, Claus O.
Publisher:United States: PeerJ, Inc
Journal title:PeerJ (San Francisco, CA), 2018-01, Vol.6, p.e4251-e4251, Article e4251
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Modeling poliovirus replication dynamics from live time-lapse single-cell imaging data
Author / Creator:Teufel, Ashley I. ; Liu, Wu ; Draghi, Jeremy A. ; Cameron, Craig E. ; Wilke, Claus O.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-05, Vol.11 (1), p.9622-15, Article 9622
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A computational exploration of resilience and evolvability of protein–protein interaction networks
Author / Creator:Klein, Brennan ; Holmér, Ludvig ; Smith, Keith M. ; Johnson, Mackenzie M. ; Swain, Anshuman ; Stolp, Laura ; Teufel, Ashley I. ; Kleppe, April S.
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2021-12, Vol.4 (1), p.1352-11, Article 1352
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Models for gene duplication when dosage balance works as a transition state to subsequent neo- or sub-functionalization
Author / Creator:Teufel, Ashley I. ; Liu, Liang ; Liberles, David A.
Publisher:England: BioMed Central
Journal title:BMC evolutionary biology, 2016-02, Vol.16 (1), p.45-45, Article 45
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A Phylogenetic Rate Parameter Indicates Different Sequence Divergence Patterns in Orthologs and Paralogs
Author / Creator:Ahrens, Joseph B. ; Teufel, Ashley I. ; Siltberg-Liberles, Jessica
Publisher:New York: Springer US
Journal title:Journal of molecular evolution, 2020-12, Vol.88 (10), p.720-730
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The Many Nuanced Evolutionary Consequences of Duplicated Genes
Author / Creator:Teufel, Ashley I ; Johnson, Mackenzie M ; Laurent, Jon M ; Kachroo, Aashiq H ; Marcotte, Edward M ; Wilke, Claus O
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2019-02, Vol.36 (2), p.304-314
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Beyond Thermodynamic Constraints: Evolutionary Sampling Generates Realistic Protein Sequence Variation
Author / Creator:Jiang, Qian ; Teufel, Ashley I ; Jackson, Eleisha L ; Wilke, Claus O
Publisher:United States: Genetics Society of America
Journal title:Genetics (Austin), 2018-04, Vol.208 (4), p.1387-1395
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2021 Zuckerkandl Prize
Author / Creator:Liberles, David A. ; Meyer, Michelle M. ; Rest, Joshua S. ; Teufel, Ashley I.
Publisher:New York: Springer US
Journal title:Journal of molecular evolution, 2022-02, Vol.90 (1), p.1-1
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INTEGRATING LANDSCAPE GENOMICS AND SPATIALLY EXPLICIT APPROACHES TO DETECT LOCI UNDER SELECTION IN CLINAL POPULATIONS
Author / Creator:Jones, Matthew R. ; Forester, Brenna R. ; Teufel, Ashley I. ; Adams, Rachael V. ; Anstett, Daniel N. ; Goodrich, Betsy A. ; Landguth, Erin L. ; Joost, Stéphane ; Manel, Stéphanie
Publisher:United States: Wiley Subscription Services, Inc
Journal title:Evolution, 2013-12, Vol.67 (12), p.3455-3468
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A generalized birth and death process for modeling the fates of gene duplication
Author / Creator:Zhao, Jing ; Teufel, Ashley I. ; Liberles, David A. ; Liu, Liang
Publisher:England: BioMed Central Ltd
Journal title:BMC evolutionary biology, 2015-12, Vol.15 (1), p.275-275, Article 275
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Selection on metabolic pathway function in the presence of mutation-selection-drift balance leads to rate-limiting steps that are not evolutionarily stable
Author / Creator:Orlenko, Alena ; Teufel, Ashley I. ; Chi, Peter B. ; Liberles, David A.
Publisher:England: BioMed Central Ltd
Journal title:Biology direct, 2016-07, Vol.11 (1), p.31-31, Article 31
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Using the Mutation-Selection Framework to Characterize Selection on Protein Sequences
Author / Creator:Teufel, Ashley I. ; Ritchie, Andrew M. ; Wilke, Claus O. ; Liberles, David A.
Publisher:Switzerland: MDPI AG
Journal title:Genes, 2018-08, Vol.9 (8), p.409
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Evolution and Structure of Proteins and Proteomes
Author / Creator:Liberles, David ; Teufel, Ashley
Publisher:Switzerland: MDPI AG
Journal title:Genes, 2018-11, Vol.9 (12), p.583
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On Mechanistic Modeling of Gene Content Evolution: Birth-Death Models and Mechanisms of Gene Birth and Gene Retention
Author / Creator:Teufel, Ashley ; Zhao, Jing ; O'Reilly, Malgorzata ; Liu, Liang ; Liberles, David
Publisher:MDPI AG
Journal title:Computation, 2014-09, Vol.2 (3), p.112-130
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A computational exploration of resilience and evolvability of protein-protein interaction networks
Author / Creator:Klein, Brennan ; Holmér, Ludvig ; Smith, Keith M ; Johnson, Mackenzie ; Swain, Anshuman ; Stolp, Laura ; Teufel, Ashley I ; Kleppe, April Snofrid
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-09
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ArticlesPeer ReviewedFull Text
INTEGRATING LANDSCAPE GENOMICS AND SPATIALLY EXPLICIT APPROACHES TO DETECT LOCI UNDER SELECTION IN CLINAL POPULATIONS
Author / Creator:Jones, Matthew R. ; Forester, Brenna R. ; Teufel, Ashley I. ; Adams, Rachael V. ; Anstett, Daniel N. ; Goodrich, Betsy A. ; Landguth, Erin L. ; Joost, Stéphane ; Manel, Stéphanie
Publisher:Blackwell Publishing Ltd
Journal title:Evolution, 2013-12, Vol.67 (12), p.3455-3468
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ArticlesPeer ReviewedFull Text
Withdrawn as Duplicate: The many nuanced evolutionary consequences of duplicated genes
Author / Creator:Teufel, Ashley I ; Johnson, Mackenzie M ; Laurent, Jon M ; Kachroo, Aashiq H ; Marcotte, Edward M ; Wilke, Claus O
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2018-12, Vol.35 (12), p.e1
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Quantifying the relative importance of competition, predation, and environmental variation for species coexistence
Author / Creator:Shoemaker, Lauren G ; Barner, Allison K ; Bittleston, Leonora S ; Teufel, Ashley I
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-10
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Accelerated simulation of evolutionary trajectories in origin-fixation models
Author / Creator:Teufel, Ashley I ; Wilke, Claus O
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2016-11
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Showing 1 to 20 of 25 results

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Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs

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Sicegar: R package for sigmoidal and double-sigmoidal curve fitting

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Modeling poliovirus replication dynamics from live time-lapse single-cell imaging data

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A computational exploration of resilience and evolvability of protein–protein interaction networks

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Models for gene duplication when dosage balance works as a transition state to subsequent neo- or sub-functionalization

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A Phylogenetic Rate Parameter Indicates Different Sequence Divergence Patterns in Orthologs and Paralogs

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The Many Nuanced Evolutionary Consequences of Duplicated Genes

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Beyond Thermodynamic Constraints: Evolutionary Sampling Generates Realistic Protein Sequence Variation

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2021 Zuckerkandl Prize

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INTEGRATING LANDSCAPE GENOMICS AND SPATIALLY EXPLICIT APPROACHES TO DETECT LOCI UNDER SELECTION IN CLINAL POPULATIONS

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A generalized birth and death process for modeling the fates of gene duplication

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Selection on metabolic pathway function in the presence of mutation-selection-drift balance leads to rate-limiting steps that are not evolutionarily stable

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Using the Mutation-Selection Framework to Characterize Selection on Protein Sequences

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Evolution and Structure of Proteins and Proteomes

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On Mechanistic Modeling of Gene Content Evolution: Birth-Death Models and Mechanisms of Gene Birth and Gene Retention

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A computational exploration of resilience and evolvability of protein-protein interaction networks

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INTEGRATING LANDSCAPE GENOMICS AND SPATIALLY EXPLICIT APPROACHES TO DETECT LOCI UNDER SELECTION IN CLINAL POPULATIONS

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Withdrawn as Duplicate: The many nuanced evolutionary consequences of duplicated genes

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Quantifying the relative importance of competition, predation, and environmental variation for species coexistence

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Accelerated simulation of evolutionary trajectories in origin-fixation models

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