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22 results for Tonekaboni,+Seyed+Ali+Madani

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Noncoding mutations target cis-regulatory elements of the FOXA1 plexus in prostate cancer
Author / Creator:Zhou, Stanley ; Hawley, James R. ; Soares, Fraser ; Grillo, Giacomo ; Teng, Mona ; Madani Tonekaboni, Seyed Ali ; Hua, Junjie Tony ; Kron, Ken J. ; Mazrooei, Parisa ; Ahmed, Musaddeque ; Arlidge, Christopher ; Yun, Hwa Young ; Livingstone, Julie ; Huang, Vincent ; Yamaguchi, Takafumi N. ; Espiritu, Shadrielle M. G. ; Zhu, Yanyun ; Severson, Tesa M. ; Murison, Alex ; Cameron, Sarina ; Zwart, Wilbert ; van der Kwast, Theodorus ; Pugh, Trevor J. ; Fraser, Michael ; Boutros, Paul C. ; Bristow, Robert G. ; He, Housheng Hansen ; Lupien, Mathieu
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-01, Vol.11 (1), p.441-13, Article 441
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Single-cell chromatin accessibility profiling of glioblastoma identifies an invasive cancer stem cell population associated with lower survival
Author / Creator:Guilhamon, Paul ; Chesnelong, Charles ; Kushida, Michelle M ; Nikolic, Ana ; Singhal, Divya ; MacLeod, Graham ; Madani Tonekaboni, Seyed Ali ; Cavalli, Florence MG ; Arlidge, Christopher ; Rajakulendran, Nishani ; Rastegar, Naghmeh ; Hao, Xiaoguang ; Hassam, Rozina ; Smith, Laura J ; Whetstone, Heather ; Coutinho, Fiona J ; Nadorp, Bettina ; Ellestad, Katrina I ; Luchman, H Artee ; Chan, Jennifer Ai-wen ; Shoichet, Molly S ; Taylor, Michael D ; Haibe-Kains, Benjamin ; Weiss, Samuel ; Angers, Stephane ; Gallo, Marco ; Dirks, Peter B ; Lupien, Mathieu
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2021-01, Vol.10
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Biological and therapeutic implications of a unique subtype of NPM1 mutated AML
Author / Creator:Mer, Arvind Singh ; Heath, Emily M. ; Madani Tonekaboni, Seyed Ali ; Dogan-Artun, Nergiz ; Nair, Sisira Kadambat ; Murison, Alex ; Garcia-Prat, Laura ; Shlush, Liran ; Hurren, Rose ; Voisin, Veronique ; Bader, Gary D. ; Nislow, Corey ; Rantalainen, Mattias ; Lehmann, Soren ; Gower, Mark ; Guidos, Cynthia J. ; Lupien, Mathieu ; Dick, John E. ; Minden, Mark D. ; Schimmer, Aaron D. ; Haibe-Kains, Benjamin
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-02, Vol.12 (1), p.1054-13, Article 1054
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GLUT1 inhibition blocks growth of RB1-positive triple negative breast cancer
Author / Creator:Wu, Qin ; ba-alawi, Wail ; Deblois, Genevieve ; Cruickshank, Jennifer ; Duan, Shili ; Lima-Fernandes, Evelyne ; Haight, Jillian ; Tonekaboni, Seyed Ali Madani ; Fortier, Anne-Marie ; Kuasne, Hellen ; McKee, Trevor D. ; Mahmoud, Hassan ; Kushida, Michelle ; Cameron, Sarina ; Dogan-Artun, Nergiz ; Chen, WenJun ; Nie, Yan ; Zhang, Lan Xin ; Vellanki, Ravi N. ; Zhou, Stanley ; Prinos, Panagiotis ; Wouters, Bradly G. ; Dirks, Peter B. ; Done, Susan J. ; Park, Morag ; Cescon, David W. ; Haibe-Kains, Benjamin ; Lupien, Mathieu ; Arrowsmith, Cheryl H.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-08, Vol.11 (1), p.4205-12, Article 4205
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Predictive approaches for drug combination discovery in cancer
Author / Creator:Madani Tonekaboni, Seyed Ali ; Soltan Ghoraie, Laleh ; Manem, Venkata Satya Kumar ; Haibe-Kains, Benjamin
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2018-03, Vol.19 (2), p.263-276
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Large organized chromatin lysine domains help distinguish primitive from differentiated cell populations
Author / Creator:Madani Tonekaboni, Seyed Ali ; Haibe-Kains, Benjamin ; Lupien, Mathieu
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-01, Vol.12 (1), p.499-499, Article 499
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A primary hierarchically organized patient-derived model enables in depth interrogation of stemness driven by the coding and non-coding genome
Author / Creator:Boutzen, Héléna ; Madani Tonekaboni, Seyed Ali ; Chan-Seng-Yue, Michelle ; Murison, Alex ; Takayama, Naoya ; Mbong, Nathan ; Wagenblast, Elvin ; Orouji, Elias ; Arruda, Andrea ; Mitchell, Amanda ; Notta, Faiyaz ; Minden, Mark D. ; Lupien, Mathieu ; Kaufmann, Kerstin B. ; Dick, John E.
Publisher:London: Nature Publishing Group UK
Journal title:Leukemia, 2022-11, Vol.36 (11), p.2690-2704
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Multiscale interactome analysis coupled with off-target drug predictions reveals drug repurposing candidates for human coronavirus disease
Author / Creator:Sugiyama, Michael G. ; Cui, Haotian ; Redka, Dar’ya S. ; Karimzadeh, Mehran ; Rujas, Edurne ; Maan, Hassaan ; Hayat, Sikander ; Cheung, Kyle ; Misra, Rahul ; McPhee, Joseph B. ; Viirre, Russell D. ; Haller, Andrew ; Botelho, Roberto J. ; Karshafian, Raffi ; Sabatinos, Sarah A. ; Fairn, Gregory D. ; Madani Tonekaboni, Seyed Ali ; Windemuth, Andreas ; Julien, Jean-Philippe ; Shahani, Vijay ; MacKinnon, Stephen S. ; Wang, Bo ; Antonescu, Costin N.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-12, Vol.11 (1), p.23315-18, Article 23315
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On the Study of Viscoelastic Walters’ B Fluid in Boundary Layer Flows
Author / Creator:Madani Tonekaboni, Seyed Ali ; Khoeilar, Reza ; Abkar, Ramin
Publisher:Cairo, Egypt: Hindawi Limiteds
Journal title:Mathematical Problems in Engineering, 2012-01, Vol.2012 (2012), p.314-331
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Biased Deep Learning Methods in Detection of COVID-19 Using CT Images: A Challenge Mounted by Subject-Wise-Split ISFCT Dataset
Author / Creator:Parsarad, Shiva ; Saeedizadeh, Narges ; Soufi, Ghazaleh Jamalipour ; Shafieyoon, Shamim ; Hekmatnia, Farzaneh ; Zarei, Andrew Parviz ; Soleimany, Samira ; Yousefi, Amir ; Nazari, Hengameh ; Torabi, Pegah ; S. Milani, Abbas ; Madani Tonekaboni, Seyed Ali ; Rabbani, Hossein ; Hekmatnia, Ali ; Kafieh, Rahele
Publisher:Basel: MDPI AG
Journal title:Journal of imaging, 2023-08, Vol.9 (8), p.159
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Mathematical modelling of phenotypic plasticity and conversion to a stem-cell state under hypoxia
Author / Creator:Dhawan, Andrew ; Madani Tonekaboni, Seyed Ali ; Taube, Joseph H. ; Hu, Stephen ; Sphyris, Nathalie ; Mani, Sendurai A. ; Kohandel, Mohammad
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2016-02, Vol.6 (1), p.18074-18074, Article 18074
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Chronic hypoxia favours adoption to a castration-resistant cell state in prostate cancer
Author / Creator:Cameron, Sarina ; Deblois, Genevieve ; Hawley, James R. ; Qamra, Aditi ; Zhou, Stanley ; Tonekaboni, Seyed Ali Madani ; Murison, Alexander ; Van Vliet, Romy ; Liu, Juan ; Locasale, Jason W. ; Lupien, Mathieu
Publisher:London: Nature Publishing Group UK
Journal title:Oncogene, 2023-05, Vol.42 (21), p.1693-1703
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A primary patient-derived model for investigating functional heterogeneity within the human Leukemic Stem Cell Compartment
Author / Creator:Boutzen, Helena ; Chan-Seng-Yue, Michelle ; Murison, Alexander ; Mbong, Nathan ; Wagenblast, Elvin ; Arlidge, Christopher ; Seyed Ali Madani Tonekaboni ; Orouji, Elias ; Arruda, Andrea ; Mitchell, Amanda ; Notta, Faiyaz ; Lupien, Mathieu ; Minden, Mark ; Kaufmann, Kerstin ; Dick, John
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-03
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CREAM: Clustering of genomic REgions Analysis Method
Author / Creator:Seyed Ali Madani Tonekaboni ; Mazrooei, Parisa ; Kofia, Victor ; Haibe-Kains, Benjamin ; Lupien, Mathieu
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2018-03
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Similarity identification in gene expression patterns as a new approach in phenotype classification
Author / Creator:Seyed Ali Madani Tonekaboni ; Venkata Satya Kumar Manem ; El-Hachem, Nehme ; Haibe-Kains, Benjamin
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2017-02
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Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer
Author / Creator:Deblois, Genevieve ; Seyed Ali Madani Tonekaboni ; Kao, Yunchi ; Tai, Felicia ; Liu, Xiaojing ; Ettayebi, Ilias ; Grillo, Giacomo ; Guilhamon, Paul ; Ba-Alawi, Wail ; Fedor, Alexandra ; Murison, Alexander ; Cescon, David ; Arrowsmith, Cheryl ; Decarvalho, Daniel ; Park, Morag ; Haibe-Kains, Benjamin ; Locasale, Jason W ; Lupien, Mathieu
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2018-03
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Tissue specificity of in vitro drug sensitivity
Author / Creator:Yao, Fupan ; Seyed Ali Madani Tonekaboni ; Safikhani, Zhaleh ; Smirnov, Petr ; El-Hachem, Nehme ; Freeman, Mark ; Venkata Satya Kumar Manem ; Haibe-Kains, Benjamin
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2016-11
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NodeCoder: a graph-based machine learning platform to predict active sites of modeled protein structures
Author / Creator:Abdollahi, Nasim ; Seyed Ali Madani Tonekaboni ; Huang, Jay ; Wang, Bo ; MacKinnon, Stephen
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2023-02
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Learning across label confidence distributions using Filtered Transfer Learning
Author / Creator:Seyed Ali Madani Tonekaboni ; Brereton, Andrew E ; Safikhani, Zhaleh ; Windemuth, Andreas ; Haibe-Kains, Benjamin ; MacKinnon, Stephen
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2020-06
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Accessibility Over Transposable Elements Reveals Genetic Determinants of Stemness Properties in Normal and Leukemic Hematopoiesis
Author / Creator:Nadorp, Bettina ; Grillo, Giacomo ; Qamra, Aditi ; Mitchell, Amanda ; Arlidge, Christopher ; Takayama, Naoya ; Murison, Alex ; Seyed Ali Madani Tonekaboni ; Arruda, Andrea ; Wang, Jean C Y ; Minden, Mark D ; Dick, John E ; Lupien, Mathieu
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-02
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Showing 1 to 20 of 22 results

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Noncoding mutations target cis-regulatory elements of the FOXA1 plexus in prostate cancer

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Single-cell chromatin accessibility profiling of glioblastoma identifies an invasive cancer stem cell population associated with lower survival

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Biological and therapeutic implications of a unique subtype of NPM1 mutated AML

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GLUT1 inhibition blocks growth of RB1-positive triple negative breast cancer

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Predictive approaches for drug combination discovery in cancer

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Large organized chromatin lysine domains help distinguish primitive from differentiated cell populations

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A primary hierarchically organized patient-derived model enables in depth interrogation of stemness driven by the coding and non-coding genome

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Multiscale interactome analysis coupled with off-target drug predictions reveals drug repurposing candidates for human coronavirus disease

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On the Study of Viscoelastic Walters’ B Fluid in Boundary Layer Flows

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Biased Deep Learning Methods in Detection of COVID-19 Using CT Images: A Challenge Mounted by Subject-Wise-Split ISFCT Dataset

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Mathematical modelling of phenotypic plasticity and conversion to a stem-cell state under hypoxia

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Chronic hypoxia favours adoption to a castration-resistant cell state in prostate cancer

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A primary patient-derived model for investigating functional heterogeneity within the human Leukemic Stem Cell Compartment

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CREAM: Clustering of genomic REgions Analysis Method

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Similarity identification in gene expression patterns as a new approach in phenotype classification

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Metabolic adaptations underlie epigenetic vulnerabilities in chemoresistant breast cancer

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Tissue specificity of in vitro drug sensitivity

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NodeCoder: a graph-based machine learning platform to predict active sites of modeled protein structures

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Learning across label confidence distributions using Filtered Transfer Learning

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Accessibility Over Transposable Elements Reveals Genetic Determinants of Stemness Properties in Normal and Leukemic Hematopoiesis

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