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The tepary bean genome provides insight into evolution and domestication under heat stress
Author / Creator:Moghaddam, Samira Mafi ; Oladzad, Atena ; Koh, Chushin ; Ramsay, Larissa ; Hart, John P. ; Mamidi, Sujan ; Hoopes, Genevieve ; Sreedasyam, Avinash ; Wiersma, Andrew ; Zhao, Dongyan ; Grimwood, Jane ; Hamilton, John P. ; Jenkins, Jerry ; Vaillancourt, Brieanne ; Wood, Joshua C. ; Schmutz, Jeremy ; Kagale, Sateesh ; Porch, Timothy ; Bett, Kirstin E. ; Buell, C. Robin ; McClean, Phillip E.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-05, Vol.12 (1), p.2638-14, Article 2638
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Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement
Author / Creator:Wu, Shan ; Lau, Kin H. ; Cao, Qinghe ; Hamilton, John P. ; Sun, Honghe ; Zhou, Chenxi ; Eserman, Lauren ; Gemenet, Dorcus C. ; Olukolu, Bode A. ; Wang, Haiyan ; Crisovan, Emily ; Godden, Grant T. ; Jiao, Chen ; Wang, Xin ; Kitavi, Mercy ; Manrique-Carpintero, Norma ; Vaillancourt, Brieanne ; Wiegert-Rininger, Krystle ; Yang, Xinsun ; Bao, Kan ; Schaff, Jennifer ; Kreuze, Jan ; Gruneberg, Wolfgang ; Khan, Awais ; Ghislain, Marc ; Ma, Daifu ; Jiang, Jiming ; Mwanga, Robert O. M. ; Leebens-Mack, Jim ; Coin, Lachlan J. M. ; Yencho, G. Craig ; Buell, C. Robin ; Fei, Zhangjun
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-11, Vol.9 (1), p.4580-12, Article 4580
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An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development
Author / Creator:Stelpflug, Scott C. ; Sekhon, Rajandeep S. ; Vaillancourt, Brieanne ; Hirsch, Candice N. ; Buell, C. Robin ; Leon, Natalia ; Kaeppler, Shawn M.
Publisher:United States: Crop Science Society of America
Journal title:The plant genome, 2016-03, Vol.9 (1), p.1-16
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Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum
Author / Creator:Hardigan, Michael A. ; Crisovan, Emily ; Hamilton, John P. ; Kim, Jeongwoon ; Laimbeer, Parker ; Leisner, Courtney P. ; Manrique-Carpintero, Norma C. ; Newton, Linsey ; Pham, Gina M. ; Vaillancourt, Brieanne ; Yang, Xueming ; Zeng, Zixian ; Douches, David S. ; Jiang, Jiming ; Veilleux, Richard E. ; Buell, C. Robin
Publisher:England: American Society of Plant Biologists
Journal title:The Plant cell, 2016-02, Vol.28 (2), p.388-405
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Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain
Author / Creator:Diepenbrock, Christine H. ; Kandianis, Catherine B. ; Lipka, Alexander E. ; Magallanes-Lundback, Maria ; Vaillancourt, Brieanne ; Góngora-Castillo, Elsa ; Wallace, Jason G. ; Cepela, Jason ; Mesberg, Alex ; Bradbury, Peter J. ; Ilut, Daniel C. ; Mateos-Hernandez, Maria ; Hamilton, John ; Owens, Brenda F. ; Tiede, Tyler ; Buckler, Edward S. ; Rocheford, Torbert ; Buell, C. Robin ; Gore, Michael A. ; DellaPenna, Dean
Publisher:United States: American Society of Plant Biologists
Journal title:The Plant cell, 2017-10, Vol.29 (10), p.2374-2392
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Genome-wide association analysis of stalk biomass and anatomical traits in maize
Author / Creator:Mazaheri, Mona ; Heckwolf, Marlies ; Vaillancourt, Brieanne ; Gage, Joseph L ; Burdo, Brett ; Heckwolf, Sven ; Barry, Kerrie ; Lipzen, Anna ; Ribeiro, Camila Bastos ; Kono, Thomas J Y ; Kaeppler, Heidi F ; Spalding, Edgar P ; Hirsch, Candice N ; Robin Buell, C ; de Leon, Natalia ; Kaeppler, Shawn M
Publisher:England: BioMed Central Ltd
Journal title:BMC plant biology, 2019-01, Vol.19 (1), p.45-45, Article 45
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Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Author / Creator:Kawahara, Yoshihiro ; de la Bastide, Melissa ; Hamilton, John P ; Kanamori, Hiroyuki ; McCombie, W Richard ; Ouyang, Shu ; Schwartz, David C ; Tanaka, Tsuyoshi ; Wu, Jianzhong ; Zhou, Shiguo ; Childs, Kevin L ; Davidson, Rebecca M ; Lin, Haining ; Quesada-Ocampo, Lina ; Vaillancourt, Brieanne ; Sakai, Hiroaki ; Lee, Sung Shin ; Kim, Jungsok ; Numa, Hisataka ; Itoh, Takeshi ; Buell, C Robin ; Matsumoto, Takashi
Publisher:New York: Springer New York
Journal title:Rice, 2013-02, Vol.6 (1), p.4-4, Article 4
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Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory
Author / Creator:Bryson, Abigail E. ; Lanier, Emily R. ; Lau, Kin H. ; Hamilton, John P. ; Vaillancourt, Brieanne ; Mathieu, Davis ; Yocca, Alan E. ; Miller, Garret P. ; Edger, Patrick P. ; Buell, C. Robin ; Hamberger, Björn
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-01, Vol.14 (1), p.343-14, Article 343
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Marker density and read depth for genotyping populations using genotyping-by-sequencing
Author / Creator:Beissinger, Timothy M ; Hirsch, Candice N ; Sekhon, Rajandeep S ; Foerster, Jillian M ; Johnson, James M ; Muttoni, German ; Vaillancourt, Brieanne ; Buell, C Robin ; Kaeppler, Shawn M ; de Leon, Natalia
Publisher:United States: Genetics Society of America
Journal title:Genetics (Austin), 2013-04, Vol.193 (4), p.1073-1081
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Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species
Author / Creator:Góngora-Castillo, Elsa ; Childs, Kevin L ; Fedewa, Greg ; Hamilton, John P ; Liscombe, David K ; Magallanes-Lundback, Maria ; Mandadi, Kranthi K ; Nims, Ezekiel ; Runguphan, Weerawat ; Vaillancourt, Brieanne ; Varbanova-Herde, Marina ; Dellapenna, Dean ; McKnight, Thomas D ; O'Connor, Sarah ; Buell, C Robin
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-12, Vol.7 (12), p.e52506-e52506
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k‐mer genome‐wide association study for anthracnose and BCMV resistance in a Phaseolus vulgaris Andean Diversity Panel
Author / Creator:Wiersma, Andrew T. ; Hamilton, John P. ; Vaillancourt, Brieanne ; Brose, Julia ; Awale, Halima E. ; Wright, Evan M. ; Kelly, James D. ; Buell, C. Robin
Publisher:United States: John Wiley & Sons, Inc
Journal title:The plant genome, 2024-12, Vol.17 (4), p.e20523-n/a
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Targeted genotyping‐by‐sequencing of potato and data analysis with R/polyBreedR
Author / Creator:Endelman, Jeffrey B. ; Kante, Moctar ; Lindqvist‐Kreuze, Hannele ; Kilian, Andrzej ; Shannon, Laura M. ; Caraza‐Harter, Maria V. ; Vaillancourt, Brieanne ; Mailloux, Kathrine ; Hamilton, John P. ; Buell, C. Robin
Publisher:United States: John Wiley & Sons, Inc
Journal title:The plant genome, 2024-09, Vol.17 (3), p.e20484-n/a
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mRNA-Seq analysis of the Pseudoperonospora cubensis transcriptome during cucumber (Cucumis sativus L.) infection
Author / Creator:Savory, Elizabeth A ; Adhikari, Bishwo N ; Hamilton, John P ; Vaillancourt, Brieanne ; Buell, C Robin ; Day, Brad
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-04, Vol.7 (4), p.e35796-e35796
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Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing
Author / Creator:Hansey, Candice N ; Vaillancourt, Brieanne ; Sekhon, Rajandeep S ; de Leon, Natalia ; Kaeppler, Shawn M ; Buell, C Robin
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-03, Vol.7 (3), p.e33071-e33071
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Chromosome-scale genome assembly of the 'Munstead' cultivar of Lavandula angustifolia
Author / Creator:Hamilton, John P ; Vaillancourt, Brieanne ; Wood, Joshua C ; Wang, Haiyan ; Jiang, Jiming ; Soltis, Douglas E ; Buell, C Robin ; Soltis, Pamela S
Publisher:England: BioMed Central Ltd
Journal title:BMC genetics, 2023-12, Vol.24 (1), p.75-75, Article 75
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Expression profiling of Cucumis sativus in response to infection by Pseudoperonospora cubensis
Author / Creator:Adhikari, Bishwo N ; Savory, Elizabeth A ; Vaillancourt, Brieanne ; Childs, Kevin L ; Hamilton, John P ; Day, Brad ; Buell, C Robin
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-04, Vol.7 (4), p.e34954-e34954
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Chromosome-scale assembly of the Verbenaceae species Queen's Wreath (Petrea volubilis L.)
Author / Creator:Hamilton, John P ; Vaillancourt, Brieanne ; Wood, Joshua C ; Buell, C Robin
Publisher:England: BioMed Central Ltd
Journal title:BMC genetics, 2023-03, Vol.24 (1), p.14-14, Article 14
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Leveraging prior biological knowledge improves prediction of tocochromanols in maize grain
Author / Creator:Tanaka, Ryokei ; Wu, Di ; Li, Xiaowei ; Tibbs‐Cortes, Laura E. ; Wood, Joshua C. ; Magallanes‐Lundback, Maria ; Bornowski, Nolan ; Hamilton, John P. ; Vaillancourt, Brieanne ; Li, Xianran ; Deason, Nicholas T. ; Schoenbaum, Gregory R. ; Buell, C. Robin ; DellaPenna, Dean ; Yu, Jianming ; Gore, Michael A.
Publisher:United States: John Wiley & Sons, Inc
Journal title:The plant genome, 2023-12, Vol.16 (4), p.e20276-n/a
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Chromosome‐scale Salvia hispanica L. (Chia) genome assembly reveals rampant Salvia interspecies introgression
Author / Creator:Brose, Julia ; Hamilton, John P. ; Schlecht, Nicholas ; Zhao, Dongyan ; Mejía‐Ponce, Paulina M. ; Cruz‐Pérez, Arely ; Vaillancourt, Brieanne ; Wood, Joshua C. ; Edger, Patrick P. ; Montes‐Hernandez, Salvador ; Rosas, Guillermo Orozco ; Hamberger, Björn ; Cibrian‐Jaramillo, Angélica ; Buell, C. Robin
Publisher:United States: John Wiley & Sons, Inc
Journal title:The plant genome, 2024-09, Vol.17 (3), p.e20494-n/a
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Multiple Maize Reference Genomes Impact the Identification of Variants by Genome‐Wide Association Study in a Diverse Inbred Panel
Author / Creator:Gage, Joseph L. ; Vaillancourt, Brieanne ; Hamilton, John P. ; Manrique‐Carpintero, Norma C. ; Gustafson, Timothy J. ; Barry, Kerrie ; Lipzen, Anna ; Tracy, William F. ; Mikel, Mark A. ; Kaeppler, Shawn M. ; Buell, C. Robin ; Leon, Natalia
Publisher:United States: Crop Science Society of America
Journal title:The plant genome, 2019-06, Vol.12 (2), p.1-12
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Showing 1 to 20 of 46 results

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The tepary bean genome provides insight into evolution and domestication under heat stress

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Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement

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An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development

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Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum

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Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain

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Genome-wide association analysis of stalk biomass and anatomical traits in maize

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Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

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Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory

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Marker density and read depth for genotyping populations using genotyping-by-sequencing

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Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species

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k‐mer genome‐wide association study for anthracnose and BCMV resistance in a Phaseolus vulgaris Andean Diversity Panel

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Targeted genotyping‐by‐sequencing of potato and data analysis with R/polyBreedR

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mRNA-Seq analysis of the Pseudoperonospora cubensis transcriptome during cucumber (Cucumis sativus L.) infection

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Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing

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Chromosome-scale genome assembly of the 'Munstead' cultivar of Lavandula angustifolia

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Expression profiling of Cucumis sativus in response to infection by Pseudoperonospora cubensis

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Chromosome-scale assembly of the Verbenaceae species Queen's Wreath (Petrea volubilis L.)

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Leveraging prior biological knowledge improves prediction of tocochromanols in maize grain

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Chromosome‐scale Salvia hispanica L. (Chia) genome assembly reveals rampant Salvia interspecies introgression

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Multiple Maize Reference Genomes Impact the Identification of Variants by Genome‐Wide Association Study in a Diverse Inbred Panel

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