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ArticlesPeer ReviewedFull Text
RNA barcoding: the catalyst for the single-cell revolution
Author / Creator:Vallot, Céline
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Genetics, 2023-08, Vol.24 (8), p.491-491
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Multi-modal quantification of pathway activity with MAYA
Author / Creator:Landais, Yuna ; Vallot, Céline
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-03, Vol.14 (1), p.1668-1668, Article 1668
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High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer
Author / Creator:Grosselin, Kevin ; Durand, Adeline ; Marsolier, Justine ; Poitou, Adeline ; Marangoni, Elisabetta ; Nemati, Fariba ; Dahmani, Ahmed ; Lameiras, Sonia ; Reyal, Fabien ; Frenoy, Olivia ; Pousse, Yannick ; Reichen, Marcel ; Woolfe, Adam ; Brenan, Colin ; Griffiths, Andrew D. ; Vallot, Céline ; Gérard, Annabelle
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2019-06, Vol.51 (6), p.1060-1066
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CD44 regulates epigenetic plasticity by mediating iron endocytosis
Author / Creator:Müller, Sebastian ; Sindikubwabo, Fabien ; Cañeque, Tatiana ; Lafon, Anne ; Versini, Antoine ; Lombard, Bérangère ; Loew, Damarys ; Wu, Ting-Di ; Ginestier, Christophe ; Charafe-Jauffret, Emmanuelle ; Durand, Adeline ; Vallot, Céline ; Baulande, Sylvain ; Servant, Nicolas ; Rodriguez, Raphaël
Publisher:London: Nature Publishing Group UK
Journal title:Nature chemistry, 2020-10, Vol.12 (10), p.929-938
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Interactive analysis of single-cell epigenomic landscapes with ChromSCape
Author / Creator:Prompsy, Pacôme ; Kirchmeier, Pia ; Marsolier, Justine ; Deloger, Marc ; Servant, Nicolas ; Vallot, Céline
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-11, Vol.11 (1), p.5702-5702, Article 5702
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A benchmark of computational pipelines for single-cell histone modification data
Author / Creator:Raimundo, Félix ; Prompsy, Pacôme ; Vert, Jean-Philippe ; Vallot, Céline
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2023-06, Vol.24 (1), p.143-143, Article 143
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H3K27me3 conditions chemotolerance in triple-negative breast cancer
Author / Creator:Marsolier, Justine ; Prompsy, Pacôme ; Durand, Adeline ; Lyne, Anne-Marie ; Landragin, Camille ; Trouchet, Amandine ; Bento, Sabrina Tenreira ; Eisele, Almut ; Foulon, Sophie ; Baudre, Léa ; Grosselin, Kevin ; Bohec, Mylène ; Baulande, Sylvain ; Dahmani, Ahmed ; Sourd, Laura ; Letouzé, Eric ; Salomon, Anne-Vincent ; Marangoni, Elisabetta ; Perié, Leïla ; Vallot, Céline
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2022-04, Vol.54 (4), p.459-468
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LifeTime and improving European healthcare through cell-based interceptive medicine
Author / Creator:Rajewsky, Nikolaus ; Almouzni, Geneviève ; Gorski, Stanislaw A. ; Aerts, Stein ; Amit, Ido ; Bertero, Michela G. ; Bock, Christoph ; Bredenoord, Annelien L. ; Cavalli, Giacomo ; Chiocca, Susanna ; Clevers, Hans ; De Strooper, Bart ; Eggert, Angelika ; Ellenberg, Jan ; Fernández, Xosé M. ; Figlerowicz, Marek ; Gasser, Susan M. ; Hubner, Norbert ; Kjems, Jørgen ; Knoblich, Jürgen A. ; Krabbe, Grietje ; Lichter, Peter ; Linnarsson, Sten ; Marine, Jean-Christophe ; Marioni, John C. ; Marti-Renom, Marc A. ; Netea, Mihai G. ; Nickel, Dörthe ; Nollmann, Marcelo ; Novak, Halina R. ; Parkinson, Helen ; Piccolo, Stefano ; Pinheiro, Inês ; Pombo, Ana ; Popp, Christian ; Reik, Wolf ; Roman-Roman, Sergio ; Rosenstiel, Philip ; Schultze, Joachim L. ; Stegle, Oliver ; Tanay, Amos ; Testa, Giuseppe ; Thanos, Dimitris ; Theis, Fabian J. ; Torres-Padilla, Maria-Elena ; Valencia, Alfonso ; Vallot, Céline ; van Oudenaarden, Alexander ; Vidal, Marie ; Voet, Thierry
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2020-11, Vol.587 (7834), p.377-386
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XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells
Author / Creator:Vallot, Céline ; Huret, Christophe ; Lesecque, Yann ; Resch, Alissa ; Oudrhiri, Noufissa ; Bennaceur-Griscelli, Annelise ; Duret, Laurent ; Rougeulle, Claire
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2013-03, Vol.45 (3), p.239-241
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Epigenomic disorder and partial EMT impair luminal progenitor integrity in Brca1-associated breast tumorigenesis
Author / Creator:Landragin, Camille ; Saichi, Melissa ; Laisné, Marthe ; Durand, Adeline ; Prompsy, Pacôme ; Leclere, Renaud ; Mesple, Jérémy ; Borgman, Kyra ; Trouchet, Amandine ; Faraldo, Marisa M. ; Chiche, Aurélie ; Vincent-Salomon, Anne ; Salmon, Hélène ; Vallot, Céline
Publisher:England: BioMed Central Ltd
Journal title:Molecular cancer, 2025-04, Vol.24 (1), p.127-18, Article 127
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IDclust: Iterative clustering for unsupervised identification of cell types with single cell transcriptomics and epigenomics
Author / Creator:Prompsy, Pacôme ; Saichi, Mélissa ; Raimundo, Félix ; Vallot, Céline
Publisher:England: Oxford University Press
Journal title:NAR genomics and bioinformatics, 2024-12, Vol.6 (4), p.lqae174
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A vlincRNA participates in senescence maintenance by relieving H2AZ-mediated repression at the INK4 locus
Author / Creator:Lazorthes, Sandra ; Vallot, Céline ; Briois, Sébastien ; Aguirrebengoa, Marion ; Thuret, Jean-Yves ; Laurent, Georges St ; Rougeulle, Claire ; Kapranov, Philipp ; Mann, Carl ; Trouche, Didier ; Nicolas, Estelle
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2015-01, Vol.6 (1), p.5971-5971, Article 5971
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Regional copy number–independent deregulation of transcription in cancer
Author / Creator:Stransky, Nicolas ; Vallot, Céline ; Reyal, Fabien ; Bernard-Pierrot, Isabelle ; de Medina, Sixtina Gil Diez ; Segraves, Rick ; de Rycke, Yann ; Elvin, Paul ; Cassidy, Andrew ; Spraggon, Carolyn ; Graham, Alexander ; Southgate, Jennifer ; Asselain, Bernard ; Allory, Yves ; Abbou, Claude C ; Albertson, Donna G ; Thiery, Jean Paul ; Chopin, Dominique K ; Pinkel, Daniel ; Radvanyi, François
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2006-12, Vol.38 (12), p.1386-1396
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Identification in Daily Practice of Patients With Lynch Syndrome (Hereditary Nonpolyposis Colorectal Cancer): Revised Bethesda Guidelines-Based Approach Versus Molecular Screening
Author / Creator:Julié, Catherine ; Trésallet, Christophe ; Brouquet, Antoine ; Vallot, Céline ; Zimmermann, Ute ; Mitry, Emmanuel ; Radvanyi, François ; Rouleau, Etienne ; Lidereau, Rosette ; Coulet, Florence ; Olschwang, Sylviane ; Frébourg, Thierry ; Rougier, Philippe ; Nordlinger, Bernard ; Laurent-Puig, Pierre ; Penna, Christophe ; Boileau, Catherine ; Franc, Brigitte ; Muti, Christine ; Hofmann-Radvanyi, Hélène
Publisher:United States: Wolters Kluwer Health Medical Research, Lippincott Williams & Wilkins
Journal title:The American journal of gastroenterology, 2008-11, Vol.103 (11), p.2825-2835
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Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis
Author / Creator:Raimundo, Felix ; Vallot, Celine ; Vert, Jean-Philippe
Publisher:London: BioMed Central Ltd
Journal title:Genome Biology, 2020-08, Vol.21 (1), p.212-212, Article 212
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Reinforcement of STAT3 activity reprogrammes human embryonic stem cells to naive-like pluripotency
Author / Creator:Chen, Hongwei ; Aksoy, Irène ; Gonnot, Fabrice ; Osteil, Pierre ; Aubry, Maxime ; Hamela, Claire ; Rognard, Cloé ; Hochard, Arnaud ; Voisin, Sophie ; Fontaine, Emeline ; Mure, Magali ; Afanassieff, Marielle ; Cleroux, Elouan ; Guibert, Sylvain ; Chen, Jiaxuan ; Vallot, Céline ; Acloque, Hervé ; Genthon, Clémence ; Donnadieu, Cécile ; De Vos, John ; Sanlaville, Damien ; Guérin, Jean- François ; Weber, Michael ; Stanton, Lawrence W ; Rougeulle, Claire ; Pain, Bertrand ; Bourillot, Pierre-Yves ; Savatier, Pierre
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2015-05, Vol.6 (1), p.7095-7095, Article 7095
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Ordered chromatin changes and human X chromosome reactivation by cell fusion-mediated pluripotent reprogramming
Author / Creator:Cantone, Irene ; Bagci, Hakan ; Dormann, Dirk ; Dharmalingam, Gopuraja ; Nesterova, Tatyana ; Brockdorff, Neil ; Rougeulle, Claire ; Vallot, Celine ; Heard, Edith ; Chaligne, Ronan ; Merkenschlager, Matthias ; Fisher, Amanda G.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-08, Vol.7 (1), p.12354-12354, Article 12354
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Parallel derivation of isogenic human primed and naive induced pluripotent stem cells
Author / Creator:Kilens, Stéphanie ; Meistermann, Dimitri ; Moreno, Diego ; Chariau, Caroline ; Gaignerie, Anne ; Reignier, Arnaud ; Lelièvre, Yohann ; Casanova, Miguel ; Vallot, Céline ; Nedellec, Steven ; Flippe, Léa ; Firmin, Julie ; Song, Juan ; Charpentier, Eric ; Lammers, Jenna ; Donnart, Audrey ; Marec, Nadège ; Deb, Wallid ; Bihouée, Audrey ; Le Caignec, Cédric ; Pecqueur, Claire ; Redon, Richard ; Barrière, Paul ; Bourdon, Jérémie ; Pasque, Vincent ; Soumillon, Magali ; Mikkelsen, Tarjei S. ; Rougeulle, Claire ; Fréour, Thomas ; David, Laurent
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-01, Vol.9 (1), p.360-13, Article 360
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Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis
Author / Creator:Raimundo, Felix ; Vallot, Céline ; Vert, Jean-Philippe
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-08
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Kernel-Based Testing for Single-Cell Differential Analysis
Author / Creator:Ozier-Lafontaine, Anthony ; Fourneaux, Camille ; Durif, Ghislain ; Vallot, Céline ; Gandrillon, Olivier ; Giraud, Sandrine ; Michel, Bertrand ; Picard, Franck
Publisher:BioMed Central
Journal title:Genome Biology, 2024, Vol.114
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Showing 1 to 20 of 36 results

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RNA barcoding: the catalyst for the single-cell revolution

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Multi-modal quantification of pathway activity with MAYA

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High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer

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CD44 regulates epigenetic plasticity by mediating iron endocytosis

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Interactive analysis of single-cell epigenomic landscapes with ChromSCape

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A benchmark of computational pipelines for single-cell histone modification data

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H3K27me3 conditions chemotolerance in triple-negative breast cancer

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LifeTime and improving European healthcare through cell-based interceptive medicine

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XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells

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Epigenomic disorder and partial EMT impair luminal progenitor integrity in Brca1-associated breast tumorigenesis

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IDclust: Iterative clustering for unsupervised identification of cell types with single cell transcriptomics and epigenomics

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A vlincRNA participates in senescence maintenance by relieving H2AZ-mediated repression at the INK4 locus

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Regional copy number–independent deregulation of transcription in cancer

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Identification in Daily Practice of Patients With Lynch Syndrome (Hereditary Nonpolyposis Colorectal Cancer): Revised Bethesda Guidelines-Based Approach Versus Molecular Screening

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Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis

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Reinforcement of STAT3 activity reprogrammes human embryonic stem cells to naive-like pluripotency

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Ordered chromatin changes and human X chromosome reactivation by cell fusion-mediated pluripotent reprogramming

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Parallel derivation of isogenic human primed and naive induced pluripotent stem cells

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Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis

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Kernel-Based Testing for Single-Cell Differential Analysis

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