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ArticlesPeer ReviewedFull Text
The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue
Author / Creator:Voigt, Fabian F. ; Kirschenbaum, Daniel ; Platonova, Evgenia ; Pagès, Stéphane ; Campbell, Robert A. A. ; Kastli, Rahel ; Schaettin, Martina ; Egolf, Ladan ; van der Bourg, Alexander ; Bethge, Philipp ; Haenraets, Karen ; Frézel, Noémie ; Topilko, Thomas ; Perin, Paola ; Hillier, Daniel ; Hildebrand, Sven ; Schueth, Anna ; Roebroeck, Alard ; Roska, Botond ; Stoeckli, Esther T. ; Pizzala, Roberto ; Renier, Nicolas ; Zeilhofer, Hanns Ulrich ; Karayannis, Theofanis ; Ziegler, Urs ; Batti, Laura ; Holtmaat, Anthony ; Lüscher, Christian ; Aguzzi, Adriano ; Helmchen, Fritjof
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2019-11, Vol.16 (11), p.1105-1108
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Long-range population dynamics of anatomically defined neocortical networks
Author / Creator:Chen, Jerry L ; Voigt, Fabian F ; Javadzadeh, Mitra ; Krueppel, Roland ; Helmchen, Fritjof
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2016-05, Vol.5
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Reflective multi-immersion microscope objectives inspired by the Schmidt telescope
Author / Creator:Voigt, Fabian F. ; Reuss, Anna Maria ; Naert, Thomas ; Hildebrand, Sven ; Schaettin, Martina ; Hotz, Adriana L. ; Whitehead, Lachlan ; Bahl, Armin ; Neuhauss, Stephan C. F. ; Roebroeck, Alard ; Stoeckli, Esther T. ; Lienkamp, Soeren S. ; Aguzzi, Adriano ; Helmchen, Fritjof
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2024-01, Vol.42 (1), p.65-71
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Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples
Author / Creator:Vladimirov, Nikita ; Voigt, Fabian F. ; Naert, Thomas ; Araujo, Gabriela R. ; Cai, Ruiyao ; Reuss, Anna Maria ; Zhao, Shan ; Schmid, Patricia ; Hildebrand, Sven ; Schaettin, Martina ; Groos, Dominik ; Mateos, José María ; Bethge, Philipp ; Yamamoto, Taiyo ; Aerne, Valentino ; Roebroeck, Alard ; Ertürk, Ali ; Aguzzi, Adriano ; Ziegler, Urs ; Stoeckli, Esther ; Baudis, Laura ; Lienkamp, Soeren S. ; Helmchen, Fritjof
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-03, Vol.15 (1), p.2679-16, Article 2679
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Developmental divergence of sensory stimulus representation in cortical interneurons
Author / Creator:Kastli, Rahel ; Vighagen, Rasmus ; van der Bourg, Alexander ; Argunsah, Ali Özgür ; Iqbal, Asim ; Voigt, Fabian F. ; Kirschenbaum, Daniel ; Aguzzi, Adriano ; Helmchen, Fritjof ; Karayannis, Theofanis
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-11, Vol.11 (1), p.5729-5729, Article 5729
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Context-dependent limb movement encoding in neuronal populations of motor cortex
Author / Creator:Omlor, Wolfgang ; Wahl, Anna-Sophia ; Sipilä, Pia ; Lütcke, Henry ; Laurenczy, Balazs ; Chen, I-Wen ; Sumanovski, Lazar T. ; van ’t Hoff, Marcel ; Bethge, Philipp ; Voigt, Fabian F. ; Schwab, Martin E. ; Helmchen, Fritjof
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-10, Vol.10 (1), p.4812-16, Article 4812
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An R-CaMP1.07 reporter mouse for cell-type-specific expression of a sensitive red fluorescent calcium indicator
Author / Creator:Bethge, Philipp ; Carta, Stefano ; Lorenzo, Dayra A. ; Egolf, Ladan ; Goniotaki, Despoina ; Madisen, Linda ; Voigt, Fabian F. ; Chen, Jerry L. ; Schneider, Bernard ; Ohkura, Masamichi ; Nakai, Junichi ; Zeng, Hongkui ; Aguzzi, Adriano ; Helmchen, Fritjof
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-06, Vol.12 (6), p.e0179460-e0179460
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iDISCO+ for the Study of Neuroimmune Architecture of the Rat Auditory Brainstem
Author / Creator:Perin, Paola ; Voigt, Fabian F. ; Bethge, Philipp ; Helmchen, Fritjof ; Pizzala, Roberto
Publisher:Switzerland: Frontiers Research Foundation
Journal title:Frontiers in neuroanatomy, 2019-02, Vol.13, p.15-15
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Whole‐brain microscopy reveals distinct temporal and spatial efficacy of anti‐Aβ therapies
Author / Creator:Kirschenbaum, Daniel ; Dadgar‐Kiani, Ehsan ; Catto, Francesca ; Voigt, Fabian F ; Trevisan, Chiara ; Bichsel, Oliver ; Shirani, Hamid ; Nilsson, K Peter R ; Frontzek, Karl J ; Paganetti, Paolo ; Helmchen, Fritjof ; Lee, Jin Hyung ; Aguzzi, Adriano
Publisher:Germany: EMBO Press
Journal title:EMBO molecular medicine, 2023-01, Vol.15 (1), p.e16789-n/a
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ArticlesPeer ReviewedFull Text
Prion pathogenesis is unaltered in a mouse strain with a permeable blood-brain barrier
Author / Creator:Keller, Annika ; Nuvolone, Mario ; Abakumova, Irina ; Chincisan, Andra ; Reimann, Regina ; Avar, Merve ; Heinzer, Daniel ; Hornemann, Simone ; Wagner, Josephin ; Kirschenbaum, Daniel ; Voigt, Fabian F. ; Zhu, Caihong ; Regli, Luca ; Helmchen, Fritjof ; Aguzzi, Adriano
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2018-11, Vol.14 (11), p.e1007424-e1007424
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ArticlesPeer ReviewedFull Text
Tissue Clearing and Light Sheet Microscopy: Imaging the Unsectioned Adult Zebra Finch Brain at Cellular Resolution
Author / Creator:Rocha, Mariana Diales ; Düring, Daniel Normen ; Bethge, Philipp ; Voigt, Fabian F. ; Hildebrand, Staffan ; Helmchen, Fritjof ; Pfeifer, Alexander ; Hahnloser, Richard Hans Robert ; Gahr, Manfred
Publisher:Switzerland: Frontiers Research Foundation
Journal title:Frontiers in neuroanatomy, 2019-02, Vol.13, p.13-13
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ArticlesPeer ReviewedFull Text
Value-guided remapping of sensory cortex by lateral orbitofrontal cortex
Author / Creator:Banerjee, Abhishek ; Parente, Giuseppe ; Teutsch, Jasper ; Lewis, Christopher ; Voigt, Fabian F. ; Helmchen, Fritjof
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2020-09, Vol.585 (7824), p.245-250
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Tutorial: practical considerations for tissue clearing and imaging
Author / Creator:Weiss, Kurt R. ; Voigt, Fabian F. ; Shepherd, Douglas P. ; Huisken, Jan
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2021-06, Vol.16 (6), p.2732-2748
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Whole-mouse clearing and imaging at the cellular level with vDISCO
Author / Creator:Cai, Ruiyao ; Kolabas, Zeynep Ilgin ; Pan, Chenchen ; Mai, Hongcheng ; Zhao, Shan ; Kaltenecker, Doris ; Voigt, Fabian F. ; Molbay, Muge ; Ohn, Tzu-lun ; Vincke, Cécile ; Todorov, Mihail I. ; Helmchen, Fritjof ; Van Ginderachter, Jo A. ; Ertürk, Ali
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2023-04, Vol.18 (4), p.1197-1242
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Isotropic imaging across spatial scales with axially swept light-sheet microscopy
Author / Creator:Dean, Kevin M. ; Chakraborty, Tonmoy ; Daetwyler, Stephan ; Lin, Jinlong ; Garrelts, Gerard ; M’Saad, Ons ; Mekbib, Hannahmariam T. ; Voigt, Fabian F. ; Schaettin, Martina ; Stoeckli, Esther T. ; Helmchen, Fritjof ; Bewersdorf, Joerg ; Fiolka, Reto
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2022-09, Vol.17 (9), p.2025-2053
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Multiscale optical and optoacoustic imaging of amyloid-β deposits in mice
Author / Creator:Ni, Ruiqing ; Chen, Zhenyue ; Deán-Ben, Xosé Luís ; Voigt, Fabian F. ; Kirschenbaum, Daniel ; Shi, Gloria ; Villois, Alessia ; Zhou, Quanyu ; Crimi, Alessandro ; Arosio, Paolo ; Nitsch, Roger M. ; Nilsson, K. Peter R. ; Aguzzi, Adriano ; Helmchen, Fritjof ; Klohs, Jan ; Razansky, Daniel
Publisher:London: Nature Publishing Group UK
Journal title:Nature biomedical engineering, 2022-09, Vol.6 (9), p.1031-1044
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ArticlesPeer ReviewedFull Text
Imaging the biological microcosmos with a tiny telescope
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2024-01, Vol.42 (1), p.36-37
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ArticlesFull Text
The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples
Author / Creator:Vladimirov, Nikita ; Voigt, Fabian ; Naert, Thomas ; Araujo, Gabriela R ; Cai, Ruiyao ; Reuss, Anna Maria ; Zhao, Shan ; Schmid, Patricia ; Hildebrand, Sven ; Schaettin, Martina ; Groos, Dominik ; Mateos, José María ; Bethge, Philipp ; Yamamoto, Taiyo ; Aerne, Valentino ; Alard Roebroeck ; Ertürk, Ali ; Aguzzi, Adriano ; Ziegler, Urs ; Stoeckli, Esther T ; Baudis, Laura ; Lienkamp, Soeren Sten ; Helmchen, Fritjof
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2023-12
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Sensory and Behavioral Components of Neocortical Signal Flow in Discrimination Tasks with Short-term Memory
Author / Creator:Gallero-Salas, Yasir ; Laurenczy, Balazs ; Voigt, Fabian F ; Gilad, Ariel ; Helmchen, Fritjof
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-01
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Whole brain optoacoustic tomography reveals strain-specific regional beta-amyloid densities in Alzheimer`s disease amyloidosis models
Author / Creator:Ni, Ruiqing ; Xose Luis Dean-Ben ; Kirschenbaum, Daniel ; Rudin, Markus ; Chen, Zhenyue ; Crimi, Alessandro ; Voigt, Fabian ; Nilsson, Peter R ; Helmchen, Fritjof ; Nitsch, Roger M ; Aguzzi, Adriano ; Razansky, Daniel ; Klohs, Jan
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-02
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The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue

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Long-range population dynamics of anatomically defined neocortical networks

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Reflective multi-immersion microscope objectives inspired by the Schmidt telescope

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Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples

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Developmental divergence of sensory stimulus representation in cortical interneurons

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Context-dependent limb movement encoding in neuronal populations of motor cortex

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An R-CaMP1.07 reporter mouse for cell-type-specific expression of a sensitive red fluorescent calcium indicator

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iDISCO+ for the Study of Neuroimmune Architecture of the Rat Auditory Brainstem

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Whole‐brain microscopy reveals distinct temporal and spatial efficacy of anti‐Aβ therapies

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Prion pathogenesis is unaltered in a mouse strain with a permeable blood-brain barrier

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Tissue Clearing and Light Sheet Microscopy: Imaging the Unsectioned Adult Zebra Finch Brain at Cellular Resolution

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Value-guided remapping of sensory cortex by lateral orbitofrontal cortex

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Tutorial: practical considerations for tissue clearing and imaging

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Whole-mouse clearing and imaging at the cellular level with vDISCO

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Isotropic imaging across spatial scales with axially swept light-sheet microscopy

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Multiscale optical and optoacoustic imaging of amyloid-β deposits in mice

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Imaging the biological microcosmos with a tiny telescope

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The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples

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Sensory and Behavioral Components of Neocortical Signal Flow in Discrimination Tasks with Short-term Memory

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Whole brain optoacoustic tomography reveals strain-specific regional beta-amyloid densities in Alzheimer`s disease amyloidosis models

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